Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Reverse (-)

15311702 .. 15312732

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGTGCGAGGCAGCGAGTGAGGGCGAGTCAGGGCTCCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTGCTTTATCTCGTCTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACCGCTTCCGTCAACCGGAAGCTGCGCGCCGTCGTCAACCGCCTGCTCTGGCGGGAGGTCTGCCTCTACCGCGCGCCGCGGATGACAGCGACCTTGACGAACGGGGCCCTCAACGGGCGGATCGGCGGTGGGTGGCACACGCTCGCCAAGCTCATGTTCTTCTGCTGCGGCTGCAAGCCGACTCGGCATTTCAACCTGAGTCAACCCACCCCGGGTCACCGGGTCAAGGCGTCGCGGTTCTCGAAGACCTCCGGCCAGAGCTTCCTGTCGAAGAACTGCCGGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGATAAGGAGGAGGATCACCTGGGAATCTACCGAGGGGTGTTTCGGGGTTTTCACAGGTCGAGGACGATGGCCTGCTTGATCGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCATATGCCCTTACTGTGGGGCCCGCGTTTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGGCGGCTCGGCTCGCACGACGGGGCGTTGGAGTATTTCGTGTGCGTGAACGGGCACTTGTACGGCAGTTGCTGGCTGGTGCCGTTGTCGTCGGATGAGGATGAGGAGGAGGTGGAATATTATTCGGACGGTCACCGTAGAATTACCTACGACGACCGGACGGCGACGAATGGAAGCCTTGGCTCGATGGGAGAGGAAGTTGTGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

282

Amino Acids

31.67

Weight (kDa)

8.71

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	712
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	538
AclWI	GGATC	2 cut(s)	254, 474
AcoI	YGGCCR	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 338, 352, 451, 578, 591, 609
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	148, 277, 387, 550
AluI	AGCT	4 cut(s)	148, 277, 387, 550
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	254, 474
AlwNI	CAGNNNCTG	1 cut(s)	705
Ama87I	CYCGRG	2 cut(s)	43, 337
AoxI	GGCC	4 cut(s)	231, 379, 522, 582
ApaI	GGGCCC	2 cut(s)	235, 586
ApeKI	GCWGC	4 cut(s)	13, 148, 291, 297
AspLEI	GCGC	8 cut(s)	72, 118, 153, 155, 200, 202, 629, 634
AspS9I	GGNCC	5 cut(s)	231, 232, 412, 582, 583
AsuC2I	CCSGG	5 cut(s)	338, 339, 347, 407, 451
AsuHPI	GGTGA	4 cut(s)	335, 461, 556, 758
AvaI	CYCGRG	2 cut(s)	43, 337
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	3 cut(s)	235, 586, 690
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	3 cut(s)	38, 235, 586
BbsI	GAAGAC	2 cut(s)	79, 377
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	25, 135, 278, 284
BccI	CCATC	2 cut(s)	514, 814
BceAI	ACGGC	4 cut(s)	140, 700, 712, 810
BciT130I	CCWGG	1 cut(s)	473
BcnI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BfaI	CTAG	1 cut(s)	844
BfuAI	ACCTGC	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	310
Bme1390I	CCNGG	6 cut(s)	338, 339, 347, 407, 451, 473
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	2 cut(s)	43, 337
BmgT120I	GGNCC	5 cut(s)	231, 232, 412, 582, 583
BmiI	GGNNCC	7 cut(s)	37, 232, 233, 413, 583, 584, 714
BmrFI	CCNGG	6 cut(s)	338, 339, 347, 407, 451, 473
BpiI	GAAGAC	2 cut(s)	79, 377
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 811
BsaWI	WCCGGW	2 cut(s)	141, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 338, 352, 451, 578, 591, 609
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 811
BseGI	GGATG	4 cut(s)	108, 213, 733, 739
BseLI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 338, 352, 451, 578, 591, 609
BseMII	CTCAG	1 cut(s)	314
BsePI	GCGCGC	2 cut(s)	151, 198
BseRI	GAGGAG	4 cut(s)	476, 569, 752, 755
BseSI	GKGCMC	3 cut(s)	235, 586, 690
BseXI	GCAGC	4 cut(s)	25, 135, 278, 284
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	4 cut(s)	233, 381, 524, 584
BshNI	GGYRCC	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	2 cut(s)	43, 337
BsiSI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 790
BslFI	GGGAC	3 cut(s)	119, 425, 602
BslI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 338, 352, 451, 578, 591, 609
BsmFI	GGGAC	3 cut(s)	119, 425, 602
BsnI	GGCC	4 cut(s)	233, 381, 524, 584
BsoBI	CYCGRG	2 cut(s)	43, 337
Bsp120I	GGGCCC	2 cut(s)	231, 582
Bsp1286I	GDGCHC	5 cut(s)	38, 235, 444, 586, 690
Bsp143I	GATC	3 cut(s)	246, 466, 531
BspANI	GGCC	4 cut(s)	233, 381, 524, 584
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	7 cut(s)	37, 232, 233, 413, 583, 584, 714
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	254, 474
BspT107I	GGYRCC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	538
BssECI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 811
BssHII	GCGCGC	2 cut(s)	151, 198
BssMI	GATC	3 cut(s)	246, 466, 531
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	811
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	3 cut(s)	578, 764, 770
BstACI	GRCGYC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	2 cut(s)	203, 603
BstEII	GGTNACC	2 cut(s)	341, 764
BstF5I	GGATG	4 cut(s)	108, 213, 733, 739
BstHHI	GCGC	8 cut(s)	72, 118, 153, 155, 200, 202, 629, 634
BstKTI	GATC	3 cut(s)	249, 469, 534
BstMBI	GATC	3 cut(s)	246, 466, 531
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	9 cut(s)	195, 274, 297, 310, 435, 547, 567, 594, 646
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	1 cut(s)	436
BstPI	GGTNACC	2 cut(s)	341, 764
BstSCI	CCNGG	6 cut(s)	336, 337, 345, 405, 449, 471
BstSLI	GKGCMC	3 cut(s)	235, 586, 690
BstV1I	GCAGC	4 cut(s)	25, 135, 278, 284
BstV2I	GAAGAC	2 cut(s)	79, 377
BsuRI	GGCC	4 cut(s)	233, 381, 524, 584
BtgI	CCRYGG	2 cut(s)	203, 603
BtsCI	GGATG	4 cut(s)	108, 213, 733, 739
BveI	ACCTGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	705
CfoI	GCGC	8 cut(s)	72, 118, 153, 155, 200, 202, 629, 634
Cfr13I	GGNCC	5 cut(s)	231, 232, 412, 582, 583
Cfr42I	CCGCGG	2 cut(s)	206, 606
Cfr9I	CCCGGG	1 cut(s)	337
CseI	GACGC	2 cut(s)	345, 550
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	4 cut(s)	97, 280, 433, 598
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	248, 468, 533
DpnII	GATC	3 cut(s)	246, 466, 531
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	811
Eco24I	GRGCYC	3 cut(s)	38, 235, 586
Eco47I	GGWCC	1 cut(s)	412
Eco88I	CYCGRG	2 cut(s)	43, 337
Eco91I	GGTNACC	2 cut(s)	341, 764
EcoO109I	RGGNCCY	4 cut(s)	231, 232, 412, 582
EcoO65I	GGTNACC	2 cut(s)	341, 764
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	811
EcoT38I	GRGCYC	3 cut(s)	38, 235, 586
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	4 cut(s)	100, 283, 436, 601
FaiI	YATR	6 cut(s)	98, 281, 434, 566, 568, 599
FaqI	GGGAC	3 cut(s)	119, 425, 602
FatI	CATG	4 cut(s)	96, 279, 432, 597
FauI	CCCGC	3 cut(s)	171, 534, 593
FauNDI	CATATG	1 cut(s)	566
FokI	GGATG	4 cut(s)	95, 220, 740, 746
FriOI	GRGCYC	3 cut(s)	38, 235, 586
FspBI	CTAG	1 cut(s)	844
GlaI	GCGC	8 cut(s)	71, 117, 152, 154, 199, 201, 628, 633
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	4 cut(s)	233, 381, 524, 584
HapII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 790
HgaI	GACGC	2 cut(s)	345, 550
HhaI	GCGC	8 cut(s)	72, 118, 153, 155, 200, 202, 629, 634
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	4 cut(s)	100, 283, 436, 601
Hin6I	GCGC	8 cut(s)	70, 116, 151, 153, 198, 200, 627, 632
HinP1I	GCGC	8 cut(s)	70, 116, 151, 153, 198, 200, 627, 632
HincII	GTYRAC	3 cut(s)	139, 163, 329
HindII	GTYRAC	3 cut(s)	139, 163, 329
HinfI	GANTC	7 cut(s)	28, 41, 58, 92, 307, 325, 477
HpaII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 790
HphI	GGTGA	4 cut(s)	335, 461, 556, 758
Hpy166II	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy188I	TCNGA	3 cut(s)	40, 727, 760
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy99I	CGWCG	6 cut(s)	161, 361, 656, 727, 788, 802
HpyCH4III	ACNGT	3 cut(s)	578, 764, 770
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	9 cut(s)	195, 274, 297, 310, 435, 547, 567, 594, 646
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	4 cut(s)	100, 283, 436, 601
HspAI	GCGC	8 cut(s)	70, 116, 151, 153, 198, 200, 627, 632
KspI	CCGCGG	2 cut(s)	206, 606
Kzo9I	GATC	3 cut(s)	246, 466, 531
LmnI	GCTCC	3 cut(s)	41, 128, 594
Lsp1109I	GCAGC	4 cut(s)	25, 135, 278, 284
MaeI	CTAG	1 cut(s)	844
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	341, 764
MalI	GATC	3 cut(s)	248, 468, 533
MbiI	CCGCTC	1 cut(s)	538
MboI	GATC	3 cut(s)	246, 466, 531
MboII	GAAGA	4 cut(s)	79, 277, 382, 409
MhlI	GDGCHC	5 cut(s)	38, 235, 444, 586, 690
MluCI	AATT	1 cut(s)	774
MlyI	GAGTC	5 cut(s)	35, 37, 101, 301, 334
MmeI	TCCRAC	3 cut(s)	63, 642, 705
MspA1I	CMGCKG	2 cut(s)	205, 605
MspI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 790
MspR9I	CCNGG	6 cut(s)	338, 339, 347, 407, 451, 473
MteI	GCGCNGCGC	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	9 cut(s)	195, 274, 297, 310, 435, 547, 567, 594, 646
NciI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
NdeI	CATATG	1 cut(s)	566
NdeII	GATC	3 cut(s)	246, 466, 531
NlaIII	CATG	4 cut(s)	100, 283, 436, 601
NlaIV	GGNNCC	7 cut(s)	37, 232, 233, 413, 583, 584, 714
NmeAIII	GCCGAG	3 cut(s)	289, 589, 621
NmuCI	GTSAC	2 cut(s)	341, 764
NspI	RCATGY	1 cut(s)	436
PauI	GCGCGC	2 cut(s)	151, 198
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	365, 648
PfeI	GAWTC	2 cut(s)	58, 477
PflMI	CCANNNNNTGG	1 cut(s)	102
PleI	GAGTC	5 cut(s)	35, 36, 100, 301, 333
PpsI	GAGTC	5 cut(s)	35, 36, 100, 301, 333
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	471
PspEI	GGTNACC	2 cut(s)	341, 764
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	7 cut(s)	37, 232, 233, 413, 583, 584, 714
PspOMI	GGGCCC	2 cut(s)	231, 582
PspPI	GGNCC	5 cut(s)	231, 232, 412, 582, 583
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	705
PteI	GCGCGC	2 cut(s)	151, 198
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SacII	CCGCGG	2 cut(s)	206, 606
Sau3AI	GATC	3 cut(s)	246, 466, 531
Sau96I	GGNCC	5 cut(s)	231, 232, 412, 582, 583
SchI	GAGTC	5 cut(s)	35, 37, 101, 301, 334
ScrFI	CCNGG	6 cut(s)	338, 339, 347, 407, 451, 473
SduI	GDGCHC	5 cut(s)	38, 235, 444, 586, 690
Sfr303I	CCGCGG	2 cut(s)	206, 606
SgrBI	CCGCGG	2 cut(s)	206, 606
SinI	GGWCC	1 cut(s)	412
SmaI	CCCGGG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	774
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	1 cut(s)	844
StyD4I	CCNGG	6 cut(s)	336, 337, 345, 405, 449, 471
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	3 cut(s)	578, 764, 770
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	6 cut(s)	90, 368, 395, 512, 534, 818
TasI	AATT	1 cut(s)	774
TauI	GCSGC	7 cut(s)	205, 297, 541, 608, 632, 637, 640
TfiI	GAWTC	2 cut(s)	58, 477
TseFI	GTSAC	2 cut(s)	341, 764
TseI	GCWGC	4 cut(s)	13, 148, 291, 297
Tsp45I	GTSAC	2 cut(s)	341, 764
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.