Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Forward (+)

19561633 .. 19562748

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGTGCGAGGCAGCGAGTCAGGGCGAGTCAGGGCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTCTTGTTCCTTGTGTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACGGCCTCGGTGAACAGAAAGCTACGCGCCGTCGTCAACCGCCTGCTGTGGCGCTCCGTCTGCCTCTACCGCGCGCCGCGGATGATCGCGACGCTGACGAACGGCTCGCTCAACGGCCGGATCGGCGGCGGGTGGCACACGCTCGCCAAGCTCATGTTCTTCTGCTGCGGCTGCAAGCCGACTCGGCATTTCCGGCTGAGTCAACCCACAGCCGGTCACCGAGTCAAGGCTTCGCGGTTCTCCAAGACCTCCGGGCAGAGCTTCCTGTCGAAGAGCTGCAAGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGACAAGGAGGAGGATCAGCTGGGGATCTACCGAGGGGTATTTCGGGGATTTCATAGGTCGAGGACGAGGGCGTGCCTGATAGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCATGTGCCCTTACTGTGCGGCCCCTGTGTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGAAGGCTCGGCTCGCACGACGGGTCGTTGGAGTACTTCGTGTGCGTCAATGGGCACTTGTACGGCAGCTGCTGGCTGGTGCCGTTGTCGTCGGATGAGGATGGATATGAGGAGGAGGAGGAGGATGTGGAATGTTTTGAGGACGGTCGCCGGAGAATTAGCTACGACGACCGGACGATGACGAGTGGAAGCTTTGGCTCGACGGGAGAGGAAGTTGTGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

286

Amino Acids

32.12

Weight (kDa)

8.55

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	535
AclWI	GGATC	3 cut(s)	251, 471, 482
AcoI	YGGCCR	1 cut(s)	238
AfaI	GTAC	2 cut(s)	665, 692
AfiI	CCNNNNNNNGG	6 cut(s)	99, 335, 349, 448, 588, 606
AflIII	ACRYGT	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	9 cut(s)	145, 274, 384, 399, 469, 547, 699, 792, 822
AluI	AGCT	9 cut(s)	145, 274, 384, 399, 469, 547, 699, 792, 822
Alw21I	GWGCWC	1 cut(s)	441
AlwI	GGATC	3 cut(s)	251, 471, 482
AlwNI	CAGNNNCTG	1 cut(s)	702
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	3 cut(s)	126, 238, 579
ApeKI	GCWGC	6 cut(s)	13, 288, 294, 399, 696, 699
AspLEI	GCGC	8 cut(s)	69, 115, 152, 177, 197, 199, 626, 631
AspS9I	GGNCC	2 cut(s)	409, 580
AsuC2I	CCSGG	2 cut(s)	376, 448
AsuHPI	GGTGA	3 cut(s)	145, 332, 553
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	2 cut(s)	569, 687
BanI	GGYRCC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	6 cut(s)	25, 275, 281, 386, 686, 708
BccI	CCATC	1 cut(s)	725
BceAI	ACGGC	6 cut(s)	137, 141, 241, 253, 697, 709
BcnI	CCSGG	2 cut(s)	376, 448
BfaI	CTAG	1 cut(s)	856
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	420
BglI	GCCNNNNNGGC	2 cut(s)	246, 307
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	376, 448
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	409, 580
BmiI	GGNNCC	3 cut(s)	410, 582, 711
BmrFI	CCNGG	2 cut(s)	376, 448
BpmI	CTGGAG	1 cut(s)	569
BpuMI	CCSGG	2 cut(s)	376, 448
BsaJI	CCNNGG	6 cut(s)	123, 129, 200, 447, 481, 600
BsaWI	WCCGGW	1 cut(s)	801
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 335, 349, 448, 588, 606
Bse118I	RCCGGY	1 cut(s)	335
BseDI	CCNNGG	6 cut(s)	123, 129, 200, 447, 481, 600
BseGI	GGATG	5 cut(s)	105, 210, 730, 736, 760
BseLI	CCNNNNNNNGG	6 cut(s)	99, 335, 349, 448, 588, 606
BseMII	CTCAG	1 cut(s)	311
BsePI	GCGCGC	1 cut(s)	195
BseRI	GAGGAG	6 cut(s)	473, 566, 755, 758, 761, 764
BseSI	GKGCMC	2 cut(s)	569, 687
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	6 cut(s)	25, 275, 281, 386, 686, 708
BseYI	CCCAGC	1 cut(s)	469
Bsh1285I	CGRYCG	3 cut(s)	241, 778, 802
BshFI	GGCC	3 cut(s)	128, 240, 581
BshNI	GGYRCC	1 cut(s)	709
BsiEI	CGRYCG	3 cut(s)	241, 778, 802
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	7 cut(s)	241, 316, 336, 375, 447, 781, 802
BslFI	GGGAC	4 cut(s)	116, 422, 464, 599
BslI	CCNNNNNNNGG	6 cut(s)	99, 335, 349, 448, 588, 606
BsmFI	GGGAC	4 cut(s)	116, 422, 464, 599
BsnI	GGCC	3 cut(s)	128, 240, 581
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	3 cut(s)	441, 569, 687
Bsp143I	GATC	4 cut(s)	207, 243, 463, 474
Bsp68I	TCGCGA	1 cut(s)	212
BspANI	GGCC	3 cut(s)	128, 240, 581
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	410, 582, 711
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	3 cut(s)	251, 471, 482
BspQI	GCTCTTC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	6 cut(s)	123, 129, 200, 447, 481, 600
BssHII	GCGCGC	1 cut(s)	195
BssMI	GATC	4 cut(s)	207, 243, 463, 474
Bst4CI	ACNGT	2 cut(s)	575, 776
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	9 cut(s)	167, 197, 230, 267, 299, 437, 523, 644, 704
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	3 cut(s)	123, 200, 600
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	5 cut(s)	105, 210, 730, 736, 760
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	8 cut(s)	69, 115, 152, 177, 197, 199, 626, 631
BstKTI	GATC	4 cut(s)	210, 246, 466, 477
BstMBI	GATC	4 cut(s)	207, 243, 463, 474
BstMCI	CGRYCG	3 cut(s)	241, 778, 802
BstNSI	RCATGY	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	374, 446
BstSLI	GKGCMC	2 cut(s)	569, 687
BstV1I	GCAGC	6 cut(s)	25, 275, 281, 386, 686, 708
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BstZI	CGGCCG	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	128, 240, 581
BtgI	CCRYGG	3 cut(s)	123, 200, 600
BtsCI	GGATG	5 cut(s)	105, 210, 730, 736, 760
BtuMI	TCGCGA	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	9 cut(s)	167, 197, 230, 267, 299, 437, 523, 644, 704
CaiI	CAGNNNCTG	1 cut(s)	702
CfoI	GCGC	8 cut(s)	69, 115, 152, 177, 197, 199, 626, 631
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	409, 580
Cfr42I	CCGCGG	2 cut(s)	203, 603
CseI	GACGC	4 cut(s)	58, 223, 547, 664
Csp6I	GTAC	2 cut(s)	664, 691
CviAII	CATG	5 cut(s)	94, 277, 430, 562, 595
CviQI	GTAC	2 cut(s)	664, 691
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	209, 245, 465, 476
DpnII	GATC	4 cut(s)	207, 243, 463, 474
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EclXI	CGGCCG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	338
FaeI	CATG	5 cut(s)	97, 280, 433, 565, 598
FaiI	YATR	7 cut(s)	95, 278, 431, 504, 563, 596, 738
FaqI	GGGAC	4 cut(s)	116, 422, 464, 599
FatI	CATG	5 cut(s)	93, 276, 429, 561, 594
FauI	CCCGC	2 cut(s)	245, 531
FokI	GGATG	5 cut(s)	92, 217, 737, 743, 767
FspBI	CTAG	1 cut(s)	856
GlaI	GCGC	8 cut(s)	68, 114, 151, 176, 196, 198, 625, 630
GsaI	CCCAGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	128, 240, 581
HapII	CCGG	7 cut(s)	241, 316, 336, 375, 447, 781, 802
HgaI	GACGC	4 cut(s)	58, 223, 547, 664
HhaI	GCGC	8 cut(s)	69, 115, 152, 177, 197, 199, 626, 631
Hin1II	CATG	5 cut(s)	97, 280, 433, 565, 598
Hin6I	GCGC	8 cut(s)	67, 113, 150, 175, 195, 197, 624, 629
HinP1I	GCGC	8 cut(s)	67, 113, 150, 175, 195, 197, 624, 629
HincII	GTYRAC	2 cut(s)	160, 326
HindII	GTYRAC	2 cut(s)	160, 326
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	8 cut(s)	18, 28, 38, 55, 89, 304, 322, 345
HpaII	CCGG	7 cut(s)	241, 316, 336, 375, 447, 781, 802
HphI	GGTGA	3 cut(s)	145, 332, 553
Hpy166II	GTNNAC	3 cut(s)	136, 160, 326
Hpy188I	TCNGA	1 cut(s)	724
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	3 cut(s)	136, 160, 326
Hpy99I	CGWCG	6 cut(s)	158, 217, 653, 724, 800, 835
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	2 cut(s)	575, 776
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	297, 402
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	97, 280, 433, 565, 598
HspAI	GCGC	8 cut(s)	67, 113, 150, 175, 195, 197, 624, 629
KspI	CCGCGG	2 cut(s)	203, 603
Kzo9I	GATC	4 cut(s)	207, 243, 463, 474
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	3 cut(s)	125, 182, 591
Lsp1109I	GCAGC	6 cut(s)	25, 275, 281, 386, 686, 708
MaeI	CTAG	1 cut(s)	856
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	209, 245, 465, 476
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	4 cut(s)	207, 243, 463, 474
MboII	GAAGA	2 cut(s)	274, 406
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	441, 569, 687
MluCI	AATT	1 cut(s)	786
MlyI	GAGTC	7 cut(s)	27, 32, 37, 98, 298, 331, 354
MmeI	TCCRAC	2 cut(s)	639, 702
MspA1I	CMGCKG	4 cut(s)	202, 469, 602, 699
MspI	CCGG	7 cut(s)	241, 316, 336, 375, 447, 781, 802
MspR9I	CCNGG	2 cut(s)	376, 448
MteI	GCGCNGCGC	1 cut(s)	627
NciI	CCSGG	2 cut(s)	376, 448
NdeII	GATC	4 cut(s)	207, 243, 463, 474
NlaIII	CATG	5 cut(s)	97, 280, 433, 565, 598
NlaIV	GGNNCC	3 cut(s)	410, 582, 711
NmeAIII	GCCGAG	3 cut(s)	286, 586, 618
NmuCI	GTSAC	1 cut(s)	338
NruI	TCGCGA	1 cut(s)	212
NspI	RCATGY	1 cut(s)	433
PauI	GCGCGC	1 cut(s)	195
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	99
PleI	GAGTC	7 cut(s)	26, 32, 36, 97, 298, 330, 353
PpsI	GAGTC	7 cut(s)	26, 32, 36, 97, 298, 330, 353
PpuMI	RGGWCCY	1 cut(s)	409
PscI	ACATGT	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	409
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	410, 582, 711
PspPI	GGNCC	2 cut(s)	409, 580
PspPPI	RGGWCCY	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	474
PteI	GCGCGC	1 cut(s)	195
PvuII	CAGCTG	2 cut(s)	469, 699
RruI	TCGCGA	1 cut(s)	212
RsaI	GTAC	2 cut(s)	665, 692
RsaNI	GTAC	2 cut(s)	664, 691
SacII	CCGCGG	2 cut(s)	203, 603
SapI	GCTCTTC	1 cut(s)	389
Sau3AI	GATC	4 cut(s)	207, 243, 463, 474
Sau96I	GGNCC	2 cut(s)	409, 580
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	7 cut(s)	27, 32, 37, 98, 298, 331, 354
ScrFI	CCNGG	2 cut(s)	376, 448
SduI	GDGCHC	3 cut(s)	441, 569, 687
Sfr303I	CCGCGG	2 cut(s)	203, 603
SgrBI	CCGCGG	2 cut(s)	203, 603
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	1 cut(s)	786
SspMI	CTAG	1 cut(s)	856
StyD4I	CCNGG	2 cut(s)	374, 446
TaaI	ACNGT	2 cut(s)	575, 776
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	4 cut(s)	87, 392, 509, 830
TasI	AATT	1 cut(s)	786
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	7 cut(s)	202, 252, 294, 538, 581, 605, 629
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	6 cut(s)	13, 288, 294, 399, 696, 699
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	110, 491
TspGWI	ACGGA	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	409
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	856
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.