Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005320

Physical Location & Seq

Genomic Coordinates Forward (+)

35234576 .. 35238241

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTGAAATCAGGAGAAGGCTATCATTGACAGTGGGAGTGCATCAAGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGTGGAGTTCAATCTCTCTCAGACATGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAAAATCAGATGGTTTACTCCTGTTGCAGAGGTTAAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTGTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCCAACGCCTTGGGGGGTGCTCCTGTGGTTGAAATAATGAGGACAGTTGCAGCAGATAATCTACTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTGGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

309

Amino Acids

33.31

Weight (kDa)

5.52

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	17 - 305	1.1e-84	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48160 AT2G48160 AT3G63070
fragaria_vesca	FvH4_2g23910 FvH4_2g23910 FvH4_2g23910
malus_domestica	MD03G1268600.v1.1 MD11G1289400.v1.1
prunus_persica	Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1
pyrus_communis	pycom11g25680
rosa_chinensis	RchiOBHm_Chr6g0291521 RchiOBHm_Chr6g0291531
rosa_laevigata	RLG00000012109
rosa_multiflora	Rmu_co8000626.1_g000001 Rmu_co8259725.1_g000001 Rmu_co8294861.1_g000001 Rmu_sc0012363.1_g000001 Rmu_sc0024207.1_g000004
rosa_roxburghii	Rroxscaffold_6G00405040 Rroxscaffold_7G00175990
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332300 Rh6BG339200 Rh6CG345400 Rh6DG332800
rosa_wichuraiana	Rw6G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	650, 686
AciI	CCGC	2 cut(s)	290, 896
AclWI	GGATC	3 cut(s)	734, 737, 747
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	360, 457, 482
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	8 cut(s)	225, 650, 686, 724, 725, 749, 836, 892
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	7 cut(s)	76, 154, 232, 452, 487, 542, 635
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	4 cut(s)	71, 137, 268, 371
AluI	AGCT	4 cut(s)	71, 137, 268, 371
Alw21I	GWGCWC	2 cut(s)	532, 760
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	734, 737, 747
AlwNI	CAGNNNCTG	2 cut(s)	650, 686
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	4 cut(s)	89, 293, 398, 560
ApoI	RAATTY	3 cut(s)	360, 457, 482
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	4 cut(s)	17, 52, 437, 819
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	760
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BamHI	GGATCC	1 cut(s)	739
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	2 cut(s)	532, 760
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	101, 280, 410, 572
BccI	CCATC	4 cut(s)	234, 481, 595, 901
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	645
BclI	TGATCA	1 cut(s)	121
BfaI	CTAG	3 cut(s)	104, 831, 923
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	5 cut(s)	90, 291, 294, 399, 561
BlpI	GCTNAGC	1 cut(s)	769
BlsI	GCNGC	5 cut(s)	91, 292, 295, 400, 562
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	5 cut(s)	43, 52, 120, 616, 833
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	663, 672
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	769
BsaJI	CCNNGG	4 cut(s)	144, 224, 519, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	8 cut(s)	225, 650, 686, 724, 725, 749, 836, 892
Bse1I	ACTGG	3 cut(s)	655, 785, 798
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	144, 224, 519, 886
BseGI	GGATG	3 cut(s)	58, 135, 865
BseLI	CCNNNNNNNGG	8 cut(s)	225, 650, 686, 724, 725, 749, 836, 892
BseMII	CTCAG	3 cut(s)	81, 176, 486
BseNI	ACTGG	3 cut(s)	655, 785, 798
BseRI	GAGGAG	1 cut(s)	666
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	4 cut(s)	101, 280, 410, 572
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	532, 760
BslI	CCNNNNNNNGG	8 cut(s)	225, 650, 686, 724, 725, 749, 836, 892
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	532, 760
Bsp143I	GATC	4 cut(s)	121, 385, 729, 739
Bsp1720I	GCTNAGC	1 cut(s)	769
BspACI	CCGC	2 cut(s)	290, 896
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	80, 175, 487
BspLI	GGNNCC	1 cut(s)	741
BspPI	GGATC	3 cut(s)	734, 737, 747
BsrI	ACTGG	3 cut(s)	655, 785, 798
BssECI	CCNNGG	4 cut(s)	144, 224, 519, 886
BssMI	GATC	4 cut(s)	121, 385, 729, 739
BssT1I	CCWWGG	2 cut(s)	224, 519
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	7 cut(s)	34, 407, 556, 601, 621, 904, 919
BstC8I	GCNNGC	2 cut(s)	101, 135
BstDEI	CTNAG	4 cut(s)	67, 162, 495, 769
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	58, 135, 865
BstKTI	GATC	4 cut(s)	124, 388, 732, 742
BstMBI	GATC	4 cut(s)	121, 385, 729, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 287, 821
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	4 cut(s)	101, 280, 410, 572
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	58, 135, 865
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	101, 135
CaiI	CAGNNNCTG	2 cut(s)	650, 686
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	3 cut(s)	168, 278, 389
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	4 cut(s)	67, 162, 495, 769
DpnI	GATC	4 cut(s)	123, 387, 731, 741
DpnII	GATC	4 cut(s)	121, 385, 729, 739
DraI	TTTAAA	1 cut(s)	417
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	224, 519
Eco47I	GGWCC	1 cut(s)	196
EcoRI	GAATTC	2 cut(s)	360, 482
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	224, 519
ErhI	CCWWGG	2 cut(s)	224, 519
FaeI	CATG	3 cut(s)	171, 281, 392
FaiI	YATR	8 cut(s)	169, 279, 300, 311, 390, 778, 817, 847
FatI	CATG	3 cut(s)	167, 277, 388
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	5 cut(s)	90, 291, 294, 399, 561
FokI	GGATG	3 cut(s)	65, 142, 872
Fsp4HI	GCNGC	5 cut(s)	90, 291, 294, 399, 561
FspBI	CTAG	3 cut(s)	104, 831, 923
GluI	GCNGC	5 cut(s)	90, 291, 294, 399, 561
GsuI	CTGGAG	2 cut(s)	663, 672
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	171, 281, 392
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	6 cut(s)	65, 82, 178, 326, 683, 708
HphI	GGTGA	4 cut(s)	17, 52, 437, 819
Hpy166II	GTNNAC	3 cut(s)	246, 410, 758
Hpy188I	TCNGA	6 cut(s)	165, 196, 239, 331, 481, 887
Hpy188III	TCNNGA	6 cut(s)	13, 357, 591, 680, 687, 857
Hpy8I	GTNNAC	3 cut(s)	246, 410, 758
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	12, 216, 886, 905
HpyCH4III	ACNGT	7 cut(s)	34, 407, 556, 601, 621, 904, 919
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 287, 821
HpyF3I	CTNAG	4 cut(s)	67, 162, 495, 769
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	171, 281, 392
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	121, 385, 729, 739
LmnI	GCTCC	2 cut(s)	535, 679
Lsp1109I	GCAGC	4 cut(s)	101, 280, 410, 572
LweI	GCATC	5 cut(s)	43, 52, 120, 616, 833
MaeI	CTAG	3 cut(s)	104, 831, 923
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	170, 661, 898
MalI	GATC	4 cut(s)	123, 387, 731, 741
MboI	GATC	4 cut(s)	121, 385, 729, 739
MboII	GAAGA	3 cut(s)	122, 468, 703
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	2 cut(s)	532, 760
MluCI	AATT	6 cut(s)	360, 457, 482, 487, 630, 722
MlyI	GAGTC	3 cut(s)	59, 172, 692
MmeI	TCCRAC	2 cut(s)	354, 537
MnlI	CCTC	9 cut(s)	100, 194, 253, 490, 543, 687, 730, 827, 881
MseI	TTAA	3 cut(s)	264, 393, 416
MslI	CAYNNNNRTG	2 cut(s)	781, 858
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	189, 287, 821
NdeII	GATC	4 cut(s)	121, 385, 729, 739
NlaIII	CATG	3 cut(s)	171, 281, 392
NlaIV	GGNNCC	1 cut(s)	741
NspI	RCATGY	1 cut(s)	171
PciI	ACATGT	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	82, 326, 708
PflFI	GACNNNGTC	1 cut(s)	352
PflMI	CCANNNNNTGG	2 cut(s)	650, 686
PkrI	GCNGC	5 cut(s)	91, 292, 295, 400, 562
PleI	GAGTC	3 cut(s)	59, 172, 691
PpsI	GAGTC	3 cut(s)	59, 172, 691
PscI	ACATGT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	2 cut(s)	650, 686
PsuI	RGATCY	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
RseI	CAYNNNNRTG	2 cut(s)	781, 858
SaqAI	TTAA	3 cut(s)	264, 393, 416
SatI	GCNGC	5 cut(s)	90, 291, 294, 399, 561
Sau3AI	GATC	4 cut(s)	121, 385, 729, 739
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	59, 172, 692
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	532, 760
SfaNI	GCATC	5 cut(s)	43, 52, 120, 616, 833
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	781, 858
Sse9I	AATT	6 cut(s)	360, 457, 482, 487, 630, 722
SsiI	CCGC	2 cut(s)	290, 896
SspMI	CTAG	3 cut(s)	104, 831, 923
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	224, 519
TaaI	ACNGT	7 cut(s)	34, 407, 556, 601, 621, 904, 919
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	347
TasI	AATT	6 cut(s)	360, 457, 482, 487, 630, 722
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	82, 326, 708
Tru1I	TTAA	3 cut(s)	264, 393, 416
Tru9I	TTAA	3 cut(s)	264, 393, 416
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	4 cut(s)	89, 293, 398, 560
TspDTI	ATGAA	1 cut(s)	842
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	352
Van91I	CCANNNNNTGG	2 cut(s)	650, 686
VneI	GTGCAC	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	3 cut(s)	360, 457, 482
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	3 cut(s)	104, 831, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.