Rh6DG332800

HUA2-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
53776828 .. 53787866
11039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG332800.1

Sequence Viewer

Length: 4275 bp
ATGGCGCCTAGCAGGAGGAAAGGAGCTAGCAAAGCCGCTCAGGCCGCCGCGGCTCGCCGCCAGTGGAAGGTCGGCGATCTTGTACTTGCTAAAGTCAAAGGGTTCCCTGCTTGGCCTGCTACGGTAAGTGAGCCGGAGAAGTGGGGTTACTCTGCTGATTGGAAGAAAGTACTTGTTTTCTTCTTTGGAACACAACAGATTGCTTTCTGCAACCCTGCTGATGTTGAGGCATTTACGGAGGAGAAGAAACAGTCTCTTCTCGGAAAGCGTCATGGGAAGGGTGCTGATTTTGTTCGTGCAGTCCAGGAGATTATTGATAGTTTTGAGAAGTTGAAGAAAGAGGACCAGGTTGATGAGTTAAACTCTAGTGCAAATGGTGGGAACTCAGTCGATTCTTCATGCAATTTTGGTTCAAAGGATCAGAAAGAAGCTCCTGAAGCAATTCTTGATTTATGTCCAAAATCTTCATCTTCTACCATTGATAAAAATGAGCCAAGTAATTCTGTTGAGGATGCTTCGGCTACTGCACTAGTAGATGCCACCCTTAATAAGGAGGACTTAATTGAGGAACCTGCTGCTACCACAATGGTTTCTGAAACACCTGTGCCGACAACCTGCTCTTCAAGAAAAAGATCTGGTGACTTGCGATTACAGAGCTGTGTCTCAAAGAGAGAGGAAGCACCAGCTCGTAGGTCAAGAAGCTCATCCAGGACGGAATCACGTAAATTACGGAACTTCATAATGCCACGTGATGATGATACCAAGAATGCTGTAGATATATCTGGTAATGCAGTTCAGGACAGAAGTTTAAGAAGGAATAAACGAACACGGAAATCACCTGATGCCTCCATATGTGATGATGTTAAATTGGCTGCTTGTGTTTCAAATGGTTGTGCTGAAGATGATGGTTCTGAAGTTGTTCCAGTTGATTCTAGCACATTTAGTTTGAACGACGGCAGTGTTACTGATTCTGGTTGTAAAGGAGAGCACTCAGAGACTGTTGTTGAATGCTTGGAAGGAGATGCTGAGTTGATCAAAGGACTTGATCTCCAAATAAAGGCTTTTAGTAAGAAGAAAAGGAAACCAAACAGAAAGCGAGTTACTAATGATGCAGCTGAGCCTATTGCTATATTGGACAAGGAGACGGTTCAAGATGTTGGTTTGCAGAGCAGTAGTCAAAGTATGCAGACTGATGGTGGAAATATGAATGGAAATTTATCCAAGGAAGATGGAGATGAACATCTGCCATTGGTGAAACGAGCCAGGGTTCGAATGAATAAACCATCTTCTGTTGAGGAAGTTGATAGCTCTTCGCACATTCAAGAAAGTCTGAAGGAAGTCATGCTCAATCCATCAGGGCTGATCAATACATCTCCAATATGTGATGACAATTGCCCTGGTGGTAGGGACTCATTTGTGGTAAATGGAGCTCTAAGTAATATTACACCTTCAAGAGTTTGCACTCAAAGTTTGGAGAATAGGCCTCAGCTTTGGAACTCGAAGAAAGACCAGTCTTTTGGTTGTTCGGCTGATGGTGAAGCTGTTTTACCTCCATCTAAGCGTCTTCATCGTGCTCTAGAAGCCATGTCAGCTAATGCAGCTGAAGATGATGAAAGATGTAACTATGATTCATCAGCCATGAGGACATCTGCTATTGATTGTCATAATTCTTGCATGAACACATGCGTTACTATAACTGTGGAAAGTAATTCAGGGAATGGTCTGGGTCTGCATAGTGATGACTCTTTTGGCAATAATGCTTCAGGGTTCTCTACCAGTCCAAACCGTGTAATCTTGGAGCAAAATACTAAATCAGCAATGGAAGTGGATGTATGTGATCAAAGAAGGAATAGTCCTGATAATCAGAATAATCAGTGTTCCGTTAATGGTTTCATAGATTCTGGGCACCATGTTGGTGGTAAAATTCTTTGTGCTGGTTCTGCTGGCTGTTGCACTATTGGAACTGCAGTTCAGACTGAAAGTCCAGGGAATTTATCACATAGTATGGAGAGAAGAGAGGCTGGTACTCGATTTAATCAAGGTTCAATAGATGAGTTTCCTCGGAAAGATGAAGGTCATGCAATAATTGAATCAAGCAATAAAGATGCAGAAAATCCTGATACTGATTGTGATACTTTAGAGCATACTCTGAAGAGCTTAGATCCTGTACCAGGCACCAGCCATGGATTTGTTGAAGTTCCACGTCGAATTAATGCTAGTCCACCTCACTGTGGTGCAAAGGGCCCTAGGGAGGACATCAATTCTCTGGAGCCTGAGCTGCAAGAGAACAGAGATGTAAAAGACGTAATGGATGCTGTAAAAGAGGTCAAGCATAAACAAATAGAGAAAGGTCCTAGTTCAGTTTCCGATCCAACTGAGTACTTGACTGAAAAACATGTTGCTGGTGTCCGGTCAAGTCCATCCCTAACAGATGGAGGAGATTCTCTTGCACAAGCATCACCTCCTAATACTTCAGGCTGTCGTATTTCTACTTCCGATAGTAGTAATATTCTTCAGAACAATGGCAGTTGTAGTCCTGATGTTGATATGCACAAGAGAACATCTACTCCAGTTGATGAGGATGAAAACTCAGAAGCAGTGGTTTGTCAAAGACCAAAATCTGTGAGCAGGTATGCAGAAGCACTTGCTGCTCTGTCATCCTTTGAGACAATGCTAGGAACCTTGACAAGGACCAAGGACAGCATTGGTCGAGCAACTCGTGTAGCTATCGACTGTGGAAAGATTGGTGTAGCTTCTAAGGCGTTGGAAATTCTGGCACGTCATTTGGAAAATGAGTCGAGCTTACACCGGAGAATCGATTTATTTTTCTTGGTCGATTCAATTGCTCAGCATTCTCGAGGTTTGAAAGGTGATACTGGTGGTATGTACACTTCTGCAATCCAAGCAGTACTACCACGGTTATTGTCCGCTGCTGCTCCTCCTGGAAGTTCGGCGAATGAGAATCGTAGGCAGTGTCTAAAGGTTTTGAAACTTTGGTTGGAGAGAAGGATTGTTCCTGAGTCCATAATTCGTCGCCATATGCGAGAACTTGATTCTCTGGGTGGGTCTTCTGCTGGTGCTTATTGTCGGCGCTCCTCGAGAACAGAAAGGTCTTTGGATGATCCTCTTAGAGAGATGGAGGGTATGCTTGTCGATGAATACGGAAGTAATTCAAGTTTTCAACTTCCGGGATTTTGTATGCCCCGCATGCTCAAGGATGAAGACGGTGGAAGTGATTCTGATGGGGAGAGTTTTGAGGCTGTCACCCCTGAACATAATCCTCAGACTAATGAAGAACATGAAGCCACTCCCGCAACTGAAAGGCATAGGCATAGGCATATCTTGGAAGATGTTGATGGAGAACTTGAAATGGAGGATGTGGCTCCGTCGTGTGATGTTGACATGAGTTCATCTTGCGGTGTTGCTGGAGTCAATGTTGTGCAGGCTTCACATAATCAGTTTGAACAACATTTTCCACATCCCTTTGCCCCTCCGCTACCTCAAGATGTGCCACCGTCATCTCCTCCTCTACCATCGTCTCCTCCGCCCCCACCGCCACCAGCACCTCTGCCCCCTCCTCATGTCATTCACCCTCCATGTGCTACTTCTGATTTAAATCCATACACTGATTCACATAATGTGCATGACAGCAGAGTTCCACCTCCGCCTCAGCAGTTGAATGGACCAAGAATTAACCAAGCAATTCCTGATGCAGTGCACTATCATGCCCCCGAGTCTAGAGATCTTCACAGGCAGATGCCTGATTCTACTTCCTGCTCTTATAGTAGTTTCCCTTCCAATTCAGGGAGAAATATTCCACAAACTGATGGGGCTGCCTTCCATAACAAAGGTTACCCTTTACGGCCACCTCATGCTCCACCGTCGAATCAGTTTTCTTATGTTAAAGGAGACCATCATGTAAAGCCACGGCGTGAAGTTCCGCCTCCTTATCACAACAGGTTTGACTTCATGCAGCATGGGGACCGAGAACACTACTACAATAATCATGAAAGAATGAAACCAGCTCCTTATGATCCCCGTGAGAGCTGGAGGTTTCCCGCACATTCTTATTCTGGTCCTCGCTATCCTGAAAAAGGCAAGGCGTCTTATGGGAATGCTCCATTTGCTGGCCCCCCTCGTGAACCAACAAGATTACCTGGCCAAGGGTGGAGATTTCCTCCACGCTCAGCAAGCCACAGACACTCTTATATACCGCCTTATGATGGTCCAATACCCGTCACCAGCAGAGGTCCAGGATTTTGGCGGCCTAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1424

Amino Acids

155.37

Weight (kDa)

5.88

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 25 - 108 9.5e-18 PWWP domain
CTK3 PF12243 885 - 1005 2.1e-06 CTD kinase subunit gamma CTK3
CID PF04818 887 - 1011 7.2e-14 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 580, 623, 2619
AccB1I GGYRCC 3 cut(s) 4, 1905, 2174
AccB7I CCANNNNNTGG 1 cut(s) 4127
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 1 cut(s) 50
AclWI GGATC 5 cut(s) 426, 2156, 2363, 3116, 4028
AcoI YGGCCR 2 cut(s) 3863, 4159
AcsI RAATTY 4 cut(s) 1213, 1923, 1990, 2769
AcuI CTGAAG 9 cut(s) 456, 918, 933, 1352, 1623, 1746, 2171, 2457, 2498
AcvI CACGTG 1 cut(s) 749
AcyI GRCGYC 2 cut(s) 5, 4103
AdeI CACNNNGTG 1 cut(s) 3932
AfaI GTAC 7 cut(s) 84, 171, 2026, 2169, 2381, 2888, 2910
AflIII ACRYGT 1 cut(s) 2395
AhdI GACNNNNNGTC 1 cut(s) 1980
AhlI ACTAGT 1 cut(s) 529
AjiI CACGTC 2 cut(s) 2204, 2780
AjuI GAANNNNNNNTTGG 2 cut(s) 2981, 3013
AleI CACNNNNGTG 1 cut(s) 2232
AloI GAACNNNNNNTCC 4 cut(s) 1953, 1985, 2551, 2583
Alw21I GWGCWC 4 cut(s) 990, 1432, 1576, 3720
Alw26I GTCTC 7 cut(s) 258, 667, 989, 1136, 2660, 3543, 3903
Alw44I GTGCAC 1 cut(s) 3716
AlwI GGATC 5 cut(s) 426, 2156, 2363, 3116, 4028
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 3 cut(s) 2856, 3097, 3731
AoxI GGCC 8 cut(s) 42, 113, 1481, 2242, 3863, 4129, 4159, 4265
ApaI GGGCCC 1 cut(s) 2246
ApaLI GTGCAC 1 cut(s) 3716
ApoI RAATTY 4 cut(s) 1213, 1923, 1990, 2769
ArsI GACNNNNNNTTYG 2 cut(s) 1499, 1531
AseI ATTAAT 1 cut(s) 2211
Asp700I GAANNNNTTC 4 cut(s) 441, 918, 3169, 3235
AspA2I CCTAGG 1 cut(s) 2246
AspLEI GCGC 2 cut(s) 7, 3093
AsuC2I CCSGG 1 cut(s) 3189
AsuHPI GGTGA 9 cut(s) 650, 828, 1264, 1547, 2451, 2882, 3256, 3581, 4231
AsuII TTCGAA 1 cut(s) 1270
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 3 cut(s) 2856, 3097, 3731
AvaII GGWCC 8 cut(s) 343, 2351, 2691, 3683, 3982, 4076, 4226, 4250
AvrII CCTAGG 1 cut(s) 2246
BaeGI GKGCMC 3 cut(s) 1908, 2246, 3720
BalI TGGCCA 1 cut(s) 4161
BanI GGYRCC 3 cut(s) 4, 1905, 2174
BanII GRGCYC 2 cut(s) 1432, 2246
BauI CACGAG 2 cut(s) 2718, 4137
BbrPI CACGTG 1 cut(s) 749
BbsI GAAGAC 3 cut(s) 1556, 3060, 3228
Bbv12I GWGCWC 4 cut(s) 990, 1432, 1576, 3720
BbvCI CCTCAGC 2 cut(s) 1485, 3669
BceAI ACGGC 3 cut(s) 970, 3878, 3944
BcgI CGANNNNNNTGC 2 cut(s) 2825, 2859
BclI TGATCA 3 cut(s) 1032, 1362, 1837
BcnI CCSGG 1 cut(s) 3189
BcoDI GTCTC 7 cut(s) 258, 667, 989, 1136, 2660, 3543, 3903
BcuI ACTAGT 1 cut(s) 529
BfmI CTRYAG 2 cut(s) 771, 1965
BfoI RGCGCY 2 cut(s) 8, 3094
BfuAI ACCTGC 3 cut(s) 580, 623, 2619
BglI GCCNNNNNGGC 2 cut(s) 41, 50
BglII AGATCT 2 cut(s) 632, 3742
BlnI CCTAGG 1 cut(s) 2246
BlpI GCTNAGC 3 cut(s) 1116, 2847, 4186
BmcAI AGTACT 3 cut(s) 171, 2381, 2910
Bme18I GGWCC 8 cut(s) 343, 2351, 2691, 3683, 3982, 4076, 4226, 4250
BmeRI GACNNNNNGTC 1 cut(s) 1980
BmeT110I CYCGRG 3 cut(s) 2856, 3097, 3731
BmgBI CACGTC 2 cut(s) 2204, 2780
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 3 cut(s) 1556, 3060, 3228
BplI GAGNNNNNCTC 4 cut(s) 347, 379, 4162, 4194
BpmI CTGGAG 4 cut(s) 2288, 2553, 3447, 4069
Bpu10I CCTNAGC 4 cut(s) 39, 1485, 2274, 3669
Bpu1102I GCTNAGC 3 cut(s) 1116, 2847, 4186
Bpu14I TTCGAA 1 cut(s) 1270
BpuEI CTTGAG 2 cut(s) 3197, 3486
BpuMI CCSGG 1 cut(s) 3189
Bsa29I ATCGAT 1 cut(s) 2817
BsaAI YACGTR 2 cut(s) 722, 749
BsaBI GATNNNNATC 2 cut(s) 1239, 3615
BsaHI GRCGYC 2 cut(s) 5, 4103
BsaI GGTCTC 1 cut(s) 3903
BsaWI WCCGGW 2 cut(s) 2409, 2808
BsaXI ACNNNNNCTCC 6 cut(s) 1032, 1062, 2551, 2581, 3420, 3450
Bse1I ACTGG 6 cut(s) 61, 923, 1510, 1776, 2570, 2881
Bse3DI GCAATG 1 cut(s) 1824
Bse8I GATNNNNATC 2 cut(s) 1239, 3615
BseCI ATCGAT 1 cut(s) 2817
BseJI GATNNNNATC 2 cut(s) 1239, 3615
BseMI GCAATG 1 cut(s) 1824
BseNI ACTGG 6 cut(s) 61, 923, 1510, 1776, 2570, 2881
BseRI GAGGAG 8 cut(s) 254, 2451, 2928, 3085, 3513, 3516, 3531, 3567
BseSI GKGCMC 3 cut(s) 1908, 2246, 3720
BsgI GTGCAG 3 cut(s) 318, 510, 3461
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 8 cut(s) 44, 115, 1483, 2244, 3865, 4131, 4161, 4267
BshNI GGYRCC 3 cut(s) 4, 1905, 2174
BshVI ATCGAT 1 cut(s) 2817
BsiHKAI GWGCWC 4 cut(s) 990, 1432, 1576, 3720
BsiHKCI CYCGRG 3 cut(s) 2856, 3097, 3731
BsiSI CCGG 4 cut(s) 134, 2410, 2809, 3188
BslFI GGGAC 2 cut(s) 1421, 3995
BsmAI GTCTC 7 cut(s) 258, 667, 989, 1136, 2660, 3543, 3903
BsmBI CGTCTC 2 cut(s) 1136, 3543
BsmFI GGGAC 2 cut(s) 1421, 3995
BsmI GAATGC 4 cut(s) 772, 1013, 2851, 4120
BsnI GGCC 8 cut(s) 44, 115, 1483, 2244, 3865, 4131, 4161, 4267
Bso31I GGTCTC 1 cut(s) 3903
BsoBI CYCGRG 3 cut(s) 2856, 3097, 3731
Bsp119I TTCGAA 1 cut(s) 1270
Bsp120I GGGCCC 1 cut(s) 2242
Bsp1286I GDGCHC 6 cut(s) 990, 1432, 1576, 1908, 2246, 3720
Bsp1407I TGTACA 1 cut(s) 2886
Bsp1720I GCTNAGC 3 cut(s) 1116, 2847, 4186
Bsp19I CCATGG 1 cut(s) 2182
BspANI GGCC 8 cut(s) 44, 115, 1483, 2244, 3865, 4131, 4161, 4267
BspDI ATCGAT 1 cut(s) 2817
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 4006
BspMAI CTGCAG 1 cut(s) 1969
BspMI ACCTGC 3 cut(s) 580, 623, 2619
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 5 cut(s) 426, 2156, 2363, 3116, 4028
BspQI GCTCTTC 3 cut(s) 625, 1315, 2147
BspT104I TTCGAA 1 cut(s) 1270
BspT107I GGYRCC 3 cut(s) 4, 1905, 2174
BspTNI GGTCTC 1 cut(s) 3903
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 1824
BsrGI TGTACA 1 cut(s) 2886
BsrI ACTGG 6 cut(s) 61, 923, 1510, 1776, 2570, 2881
BssNI GRCGYC 2 cut(s) 5, 4103
BssSI CACGAG 2 cut(s) 2718, 4137
BssT1I CCWWGG 5 cut(s) 1221, 2182, 2246, 2694, 4162
Bst2BI CACGAG 2 cut(s) 2718, 4137
Bst6I CTCTTC 5 cut(s) 261, 625, 1315, 2008, 2147
BstACI GRCGYC 2 cut(s) 5, 4103
BstAPI GCANNNNNTGC 1 cut(s) 2648
BstAUI TGTACA 1 cut(s) 2886
BstBAI YACGTR 2 cut(s) 722, 749
BstBI TTCGAA 1 cut(s) 1270
BstC8I GCNNGC 8 cut(s) 28, 55, 117, 1945, 3209, 3444, 4129, 4192
BstDSI CCRYGG 4 cut(s) 48, 2182, 2915, 3926
BstEII GGTNACC 1 cut(s) 3851
BstENI CCTNNNNNAGG 5 cut(s) 548, 2169, 2686, 4092, 4161
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 8, 3094
BstHHI GCGC 2 cut(s) 7, 3093
BstMAI GTCTC 7 cut(s) 258, 667, 989, 1136, 2660, 3543, 3903
BstNSI RCATGY 3 cut(s) 1686, 2399, 3211
BstPI GGTNACC 1 cut(s) 3851
BstSFI CTRYAG 2 cut(s) 771, 1965
BstSLI GKGCMC 3 cut(s) 1908, 2246, 3720
BstUI CGCG 1 cut(s) 50
BstV2I GAAGAC 3 cut(s) 1556, 3060, 3228
BstX2I RGATCY 3 cut(s) 632, 2161, 3742
BstXI CCANNNNNNTGG 3 cut(s) 1517, 1916, 4260
BstYI RGATCY 3 cut(s) 632, 2161, 3742
Bsu15I ATCGAT 1 cut(s) 2817
BsuRI GGCC 8 cut(s) 44, 115, 1483, 2244, 3865, 4131, 4161, 4267
BsuTUI ATCGAT 1 cut(s) 2817
BtgI CCRYGG 4 cut(s) 48, 2182, 2915, 3926
BtrI CACGTC 2 cut(s) 2204, 2780
BtsI GCAGTG 4 cut(s) 964, 2604, 2978, 3720
BtsIMutI CAGTG 8 cut(s) 68, 964, 1880, 2227, 2604, 2978, 3624, 3720
BveI ACCTGC 3 cut(s) 580, 623, 2619
Cac8I GCNNGC 8 cut(s) 28, 55, 117, 1945, 3209, 3444, 4129, 4192
CaiI CAGNNNCTG 1 cut(s) 998
CciI TCATGA 1 cut(s) 4006
CfoI GCGC 2 cut(s) 7, 3093
Cfr42I CCGCGG 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 2817
CseI GACGC 3 cut(s) 257, 1550, 4092
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 7 cut(s) 83, 170, 2025, 2168, 2380, 2887, 2909
CspCI CAANNNNNGTGG 4 cut(s) 1806, 1841, 2904, 2939
CviQI GTAC 7 cut(s) 83, 170, 2025, 2168, 2380, 2887, 2909
DinI GGCGCC 1 cut(s) 6
DraI TTTAAA 1 cut(s) 3615
DraIII CACNNNGTG 1 cut(s) 3932
DriI GACNNNNNGTC 1 cut(s) 1980
EaeI YGGCCR 2 cut(s) 3863, 4159
Eam1104I CTCTTC 5 cut(s) 261, 625, 1315, 2008, 2147
Eam1105I GACNNNNNGTC 1 cut(s) 1980
EarI CTCTTC 5 cut(s) 261, 625, 1315, 2008, 2147
EciI GGCGGA 3 cut(s) 3534, 3654, 3930
Ecl136II GAGCTC 1 cut(s) 1430
Eco130I CCWWGG 5 cut(s) 1221, 2182, 2246, 2694, 4162
Eco147I AGGCCT 1 cut(s) 1483
Eco24I GRGCYC 2 cut(s) 1432, 2246
Eco31I GGTCTC 1 cut(s) 3903
Eco47I GGWCC 8 cut(s) 343, 2351, 2691, 3683, 3982, 4076, 4226, 4250
Eco53kI GAGCTC 1 cut(s) 1430
Eco57I CTGAAG 9 cut(s) 456, 918, 933, 1352, 1623, 1746, 2171, 2457, 2498
Eco72I CACGTG 1 cut(s) 749
Eco88I CYCGRG 3 cut(s) 2856, 3097, 3731
Eco91I GGTNACC 1 cut(s) 3851
EcoICRI GAGCTC 1 cut(s) 1430
EcoNI CCTNNNNNAGG 5 cut(s) 548, 2169, 2686, 4092, 4161
EcoO109I RGGNCCY 3 cut(s) 2242, 2243, 2351
EcoO65I GGTNACC 1 cut(s) 3851
EcoT14I CCWWGG 5 cut(s) 1221, 2182, 2246, 2694, 4162
EcoT38I GRGCYC 2 cut(s) 1432, 2246
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 5 cut(s) 1221, 2182, 2246, 2694, 4162
Esp3I CGTCTC 2 cut(s) 1136, 3543
FalI AAGNNNNNCTT 4 cut(s) 429, 461, 542, 574
FaqI GGGAC 2 cut(s) 1421, 3995
FauI CCCGC 3 cut(s) 3212, 3319, 4066
FauNDI CATATG 2 cut(s) 851, 3039
FbaI TGATCA 3 cut(s) 1032, 1362, 1837
FriOI GRGCYC 2 cut(s) 1432, 2246
GlaI GCGC 2 cut(s) 6, 3092
GsuI CTGGAG 4 cut(s) 2288, 2553, 3447, 4069
HaeII RGCGCY 2 cut(s) 8, 3094
HaeIII GGCC 8 cut(s) 44, 115, 1483, 2244, 3865, 4131, 4161, 4267
HapII CCGG 4 cut(s) 134, 2410, 2809, 3188
HgaI GACGC 3 cut(s) 257, 1550, 4092
HhaI GCGC 2 cut(s) 7, 3093
Hin1I GRCGYC 2 cut(s) 5, 4103
Hin6I GCGC 2 cut(s) 5, 3091
HinP1I GCGC 2 cut(s) 5, 3091
HincII GTYRAC 1 cut(s) 3400
HindII GTYRAC 1 cut(s) 3400
HpaII CCGG 4 cut(s) 134, 2410, 2809, 3188
HphI GGTGA 9 cut(s) 650, 828, 1264, 1547, 2451, 2882, 3256, 3581, 4231
Hpy166II GTNNAC 5 cut(s) 2222, 2889, 3400, 3718, 4142
Hpy8I GTNNAC 5 cut(s) 2222, 2889, 3400, 3718, 4142
Hpy99I CGWCG 5 cut(s) 956, 2208, 3036, 3391, 3886
HpyCH4IV ACGT 5 cut(s) 721, 748, 2203, 2304, 2779
HpySE526I ACGT 5 cut(s) 721, 748, 2203, 2304, 2779
Hsp92I GRCGYC 2 cut(s) 5, 4103
HspAI GCGC 2 cut(s) 5, 3091
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 3 cut(s) 1032, 1362, 1837
KspI CCGCGG 1 cut(s) 51
LguI GCTCTTC 3 cut(s) 625, 1315, 2147
MabI ACCWGGT 1 cut(s) 345
MaeII ACGT 5 cut(s) 721, 748, 2203, 2304, 2779
MaeIII GTNAC 9 cut(s) 146, 638, 961, 1099, 1619, 1687, 3262, 3851, 4237
MbiI CCGCTC 1 cut(s) 38
MfeI CAATTG 2 cut(s) 1390, 2841
MflI RGATCY 3 cut(s) 632, 2161, 3742
MhlI GDGCHC 6 cut(s) 990, 1432, 1576, 1908, 2246, 3720
MlsI TGGCCA 1 cut(s) 4161
MluNI TGGCCA 1 cut(s) 4161
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 6 cut(s) 1403, 1736, 2804, 3029, 3438, 3743
MmeI TCCRAC 3 cut(s) 2396, 2745, 2979
Mox20I TGGCCA 1 cut(s) 4161
MroXI GAANNNNTTC 4 cut(s) 441, 918, 3169, 3235
MscI TGGCCA 1 cut(s) 4161
MslI CAYNNNNRTG 4 cut(s) 1737, 1914, 2232, 3723
Msp20I TGGCCA 1 cut(s) 4161
MspA1I CMGCKG 4 cut(s) 50, 1115, 1601, 2930
MspI CCGG 4 cut(s) 134, 2410, 2809, 3188
MunI CAATTG 2 cut(s) 1390, 2841
Mva1269I GAATGC 4 cut(s) 772, 1013, 2851, 4120
MvnI CGCG 1 cut(s) 50
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 3189
NcoI CCATGG 1 cut(s) 2182
NdeI CATATG 2 cut(s) 851, 3039
NheI GCTAGC 1 cut(s) 26
NmuCI GTSAC 3 cut(s) 638, 3262, 4237
NspI RCATGY 3 cut(s) 1686, 2399, 3211
NspV TTCGAA 1 cut(s) 1270
OliI CACNNNNGTG 1 cut(s) 2232
PaeI GCATGC 1 cut(s) 3211
PaeR7I CTCGAG 2 cut(s) 2856, 3097
PagI TCATGA 1 cut(s) 4006
PceI AGGCCT 1 cut(s) 1483
PciI ACATGT 1 cut(s) 2395
PciSI GCTCTTC 3 cut(s) 625, 1315, 2147
PcsI WCGNNNNNNNCGW 2 cut(s) 2716, 3040
PctI GAATGC 4 cut(s) 772, 1013, 2851, 4120
PdmI GAANNNNTTC 4 cut(s) 441, 918, 3169, 3235
PflMI CCANNNNNTGG 1 cut(s) 4127
PfoI TCCNGGA 5 cut(s) 303, 707, 2941, 3187, 4252
PleI GAGTC 6 cut(s) 1403, 1736, 2803, 3028, 3437, 3742
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 749
PmlI CACGTG 1 cut(s) 749
PpsI GAGTC 6 cut(s) 1403, 1736, 2803, 3028, 3437, 3742
Ppu21I YACGTR 2 cut(s) 722, 749
PpuMI RGGWCCY 1 cut(s) 2351
PscI ACATGT 1 cut(s) 2395
PshBI ATTAAT 1 cut(s) 2211
Psp124BI GAGCTC 1 cut(s) 1432
Psp5II RGGWCCY 1 cut(s) 2351
PspCI CACGTG 1 cut(s) 749
PspEI GGTNACC 1 cut(s) 3851
PspOMI GGGCCC 1 cut(s) 2242
PspPPI RGGWCCY 1 cut(s) 2351
PstI CTGCAG 1 cut(s) 1969
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 3 cut(s) 632, 2161, 3742
PvuII CAGCTG 2 cut(s) 1115, 1601
RsaI GTAC 7 cut(s) 84, 171, 2026, 2169, 2381, 2888, 2910
RsaNI GTAC 7 cut(s) 83, 170, 2025, 2168, 2380, 2887, 2909
RseI CAYNNNNRTG 4 cut(s) 1737, 1914, 2232, 3723
SacI GAGCTC 1 cut(s) 1432
SacII CCGCGG 1 cut(s) 51
SapI GCTCTTC 3 cut(s) 625, 1315, 2147
ScaI AGTACT 3 cut(s) 171, 2381, 2910
SchI GAGTC 6 cut(s) 1403, 1736, 2804, 3029, 3438, 3743
SduI GDGCHC 6 cut(s) 990, 1432, 1576, 1908, 2246, 3720
SexAI ACCWGGT 1 cut(s) 345
SfcI CTRYAG 2 cut(s) 771, 1965
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 2 cut(s) 2856, 3097
Sfr303I CCGCGG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 1270
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 8 cut(s) 343, 2351, 2691, 3683, 3982, 4076, 4226, 4250
SlaI CTCGAG 2 cut(s) 2856, 3097
SmiI ATTTAAAT 1 cut(s) 3615
SmiMI CAYNNNNRTG 4 cut(s) 1737, 1914, 2232, 3723
SmlI CTYRAG 4 cut(s) 2856, 3097, 3212, 3501
SmoI CTYRAG 4 cut(s) 2856, 3097, 3212, 3501
SpeI ACTAGT 1 cut(s) 529
SphI GCATGC 1 cut(s) 3211
SseBI AGGCCT 1 cut(s) 1483
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 3 cut(s) 1441, 2509, 3814
SstI GAGCTC 1 cut(s) 1432
StuI AGGCCT 1 cut(s) 1483
StyI CCWWGG 5 cut(s) 1221, 2182, 2246, 2694, 4162
SwaI ATTTAAAT 1 cut(s) 3615
TaiI ACGT 5 cut(s) 724, 751, 2206, 2307, 2782
TaqII GACCGA 1 cut(s) 3999
TatI WGTACW 5 cut(s) 82, 169, 2379, 2886, 2908
TauI GCSGC 6 cut(s) 38, 47, 50, 53, 60, 4267
TscAI CASTG 8 cut(s) 68, 964, 1880, 2234, 2604, 2978, 3631, 3720
TseFI GTSAC 3 cut(s) 638, 3262, 4237
Tsp45I GTSAC 3 cut(s) 638, 3262, 4237
TspGWI ACGGA 7 cut(s) 251, 728, 745, 844, 1870, 3177, 3375
TspRI CASTG 8 cut(s) 68, 964, 1880, 2234, 2604, 2978, 3631, 3720
Van91I CCANNNNNTGG 1 cut(s) 4127
VneI GTGCAC 1 cut(s) 3716
VpaK11BI GGWCC 8 cut(s) 343, 2351, 2691, 3683, 3982, 4076, 4226, 4250
VspI ATTAAT 1 cut(s) 2211
XagI CCTNNNNNAGG 5 cut(s) 548, 2169, 2686, 4092, 4161
XapI RAATTY 4 cut(s) 1213, 1923, 1990, 2769
XbaI TCTAGA 2 cut(s) 1576, 3737
XceI RCATGY 3 cut(s) 1686, 2399, 3211
XhoI CTCGAG 2 cut(s) 2856, 3097
XmaJI CCTAGG 1 cut(s) 2246
XmnI GAANNNNTTC 4 cut(s) 441, 918, 3169, 3235
ZrmI AGTACT 3 cut(s) 171, 2381, 2910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.