RchiOBHm_Chr6g0291521

HUA2-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
54631822 .. 54634324
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26157

Sequence Viewer

Length: 1392 bp
ATGGGGCAGTATTATCCTCTTACGCACCACTGTTGCTTCTTATCGGGTGAAGTGGTCTGGCGTCTGGCTCATGCATGCCTTACCTGTTCCTTCTCTTTTATACAGGTTTTGAAACTTTGGTTGGAGAGAAGGATTGTTCCTGAGTCCATAATTCGTCGCCATATGCGAGAACTTGATTCTCTGGGTGGGTCTTCTGCTGGTGCTTATTGTCGGCGCTCCTCGAGAACAGAAAGGTCTTTGGATGATCCTCTTAGAGAGATGGAGGGTATGCTTGTCGATGAATACGGAAGTAATTCAAGTTTTCAACTTCCGGGATTTTGTATGCCCCGCATGCTCAAGGATGAAGACGGTGGAAGTGATTCTGATGGGGAGAGTTTTGAGGCTGTCACCCCTGAACATAATCCTCAGACTAATGAAGAACATGAAGCCACTCCCGCAACTGAAAGGCATAGGCATATCTTGGAAGATGTTGATGGAGAACTTGAAATGGAGGATGTGGCTCCGTCGTGTGATGTTGACATGAGTTCATCTTGCAGTGTTGCTGGAGTCAATGTCGTGCAGGCTTCACATAATCAGTTTGAACAACATTTTCCACATCCCTTCGCCCCTCCGCTACCTCAAGATGTGCCACCGTCATCTCCTCCTCTACCATCGTCTCCTCCGCCCCCACCACCACCAGCACCTCTACCCCCTCCTCATGTCATTCACCCTCCATGTGCTACTTCTGATTTAAATCCATACACTGATTCACATAATGTGCATGACAGCAGAGTTCCACCTCCGCCTCAGCAGTTGAATGGACCAAGAATTAACCAAGCAATTCCTGATGCAGTGCACTATCATGCCCCCGAGTCTAGAGATCTTCACAGGCAGATGCCTGATTCTACTTCCTGCTCTTATAGTAGTTTCCCTTCCAATTCAGGGAGAAATATTCCACAAACTGATGGGGCTGCCTTCCATAACAAAGGTTACCCTTTACGGCCACCTCATGCTCCACCGTCGAATCAGTTTTCTTATGTTAAAGGAGACCATCATGTAAAGCCACGGCGTGAAGTTCCGCCTCCTTATCACAACAGGTTTGACTTCATGCAGCATGGGGACCGAGAACACTACTACAATAATCATGAAAGAATGAAACCAGCTCCTTATGATCCCCGTGACAGCTGGAGGTTTCCCTCACATTCTTATTCTGGTCCTCGCTATCCTGAAAAAGGCAAGGCGTCTTATGGGAATGCTCCATTTGCTGGCCCCCCTCGTGAACCAACAAGATTACCTGGCCAAGGGTGGAGATTTCCTCCACGGTCAGCAAGCCACAGACACTCTTATATACCGCCTTATGATGGTTCAATACCCGTCACCAGCAGAGGTCCAGGATTTTGGCGGCCTAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

52.04

Weight (kDa)

6.28

Isoelectric Point (pI)

70.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1244
AciI CCGC 8 cut(s) 328, 435, 611, 662, 782, 1058, 1331, 1381
AclWI GGATC 2 cut(s) 239, 1145
AcoI YGGCCR 2 cut(s) 980, 1276
AcyI GRCGYC 2 cut(s) 61, 1220
AdeI CACNNNGTG 1 cut(s) 1049
AfiI CCNNNNNNNGG 5 cut(s) 921, 1211, 1244, 1280, 1340
AgsI TTSAA 7 cut(s) 112, 297, 305, 485, 581, 796, 1347
AjnI CCWGG 2 cut(s) 1273, 1369
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 1142, 1164
AluI AGCT 2 cut(s) 1142, 1164
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 2 cut(s) 660, 1020
Alw44I GTGCAC 1 cut(s) 833
AlwI GGATC 2 cut(s) 239, 1145
Ama87I CYCGRG 2 cut(s) 220, 848
AoxI GGCC 4 cut(s) 980, 1246, 1276, 1382
ApaLI GTGCAC 1 cut(s) 833
ApeKI GCWGC 2 cut(s) 950, 1090
Asp700I GAANNNNTTC 2 cut(s) 292, 358
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 5 cut(s) 800, 1099, 1193, 1247, 1367
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 4 cut(s) 59, 379, 698, 1348
AvaI CYCGRG 2 cut(s) 220, 848
AvaII GGWCC 4 cut(s) 800, 1099, 1193, 1367
BaeGI GKGCMC 1 cut(s) 837
BalI TGGCCA 1 cut(s) 1278
BarI GAAGNNNNNNTAC 2 cut(s) 895, 927
BauI CACGAG 1 cut(s) 1254
BbsI GAAGAC 2 cut(s) 183, 351
Bbv12I GWGCWC 1 cut(s) 837
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 2 cut(s) 937, 1102
BccI CCATC 7 cut(s) 253, 359, 467, 658, 938, 1038, 1334
BceAI ACGGC 2 cut(s) 995, 1061
BciT130I CCWGG 2 cut(s) 1275, 1371
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 660, 1020
BfaI CTAG 2 cut(s) 855, 1386
BfoI RGCGCY 1 cut(s) 217
BglII AGATCT 1 cut(s) 859
BisI GCNGC 3 cut(s) 951, 1091, 1382
BlsI GCNGC 3 cut(s) 952, 1092, 1383
Bme1390I CCNGG 3 cut(s) 312, 1275, 1371
Bme18I GGWCC 4 cut(s) 800, 1099, 1193, 1367
BmeT110I CYCGRG 2 cut(s) 220, 848
BmgT120I GGNCC 5 cut(s) 800, 1099, 1193, 1247, 1367
BmiI GGNNCC 3 cut(s) 501, 1100, 1249
BmrFI CCNGG 3 cut(s) 312, 1275, 1371
BmsI GCATC 2 cut(s) 817, 864
BpiI GAAGAC 2 cut(s) 183, 351
BplI GAGNNNNNCTC 2 cut(s) 1279, 1311
BpmI CTGGAG 2 cut(s) 564, 1186
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 320, 603
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 2 cut(s) 61, 1220
BsaI GGTCTC 1 cut(s) 1020
BsaJI CCNNGG 3 cut(s) 1043, 1279, 1298
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 5 cut(s) 921, 1211, 1244, 1280, 1340
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 2 cut(s) 1275, 1371
BseDI CCNNGG 3 cut(s) 1043, 1279, 1298
BseGI GGATG 4 cut(s) 247, 346, 499, 595
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 5 cut(s) 921, 1211, 1244, 1280, 1340
BseMII CTCAG 3 cut(s) 132, 419, 800
BseRI GAGGAG 5 cut(s) 208, 630, 633, 648, 684
BseSI GKGCMC 1 cut(s) 837
BseXI GCAGC 2 cut(s) 937, 1102
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 4 cut(s) 982, 1248, 1278, 1384
BsiHKAI GWGCWC 1 cut(s) 837
BsiHKCI CYCGRG 2 cut(s) 220, 848
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 5 cut(s) 921, 1211, 1244, 1280, 1340
BsmAI GTCTC 2 cut(s) 660, 1020
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 1112
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 4 cut(s) 982, 1248, 1278, 1384
Bso31I GGTCTC 1 cut(s) 1020
BsoBI CYCGRG 2 cut(s) 220, 848
Bsp1286I GDGCHC 1 cut(s) 837
Bsp143I GATC 3 cut(s) 244, 859, 1150
BspACI CCGC 8 cut(s) 328, 435, 611, 662, 782, 1058, 1331, 1381
BspANI GGCC 4 cut(s) 982, 1248, 1278, 1384
BspCNI CTCAG 3 cut(s) 133, 418, 799
BspHI TCATGA 1 cut(s) 1123
BspLI GGNNCC 3 cut(s) 501, 1100, 1249
BspPI GGATC 2 cut(s) 239, 1145
BspTNI GGTCTC 1 cut(s) 1020
BssECI CCNNGG 3 cut(s) 1043, 1279, 1298
BssMI GATC 3 cut(s) 244, 859, 1150
BssNI GRCGYC 2 cut(s) 61, 1220
BssSI CACGAG 1 cut(s) 1254
BssT1I CCWWGG 1 cut(s) 1279
Bst2BI CACGAG 1 cut(s) 1254
Bst2UI CCWGG 2 cut(s) 1275, 1371
Bst4CI ACNGT 5 cut(s) 32, 350, 633, 999, 1302
BstACI GRCGYC 2 cut(s) 61, 1220
BstC8I GCNNGC 5 cut(s) 76, 332, 561, 1246, 1309
BstDEI CTNAG 4 cut(s) 141, 251, 405, 786
BstDSI CCRYGG 2 cut(s) 1043, 1298
BstEII GGTNACC 1 cut(s) 968
BstENI CCTNNNNNAGG 2 cut(s) 1209, 1278
BstF5I GGATG 4 cut(s) 247, 346, 499, 595
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 247, 862, 1153
BstMAI GTCTC 2 cut(s) 660, 1020
BstMBI GATC 3 cut(s) 244, 859, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 331, 434, 1241
BstNI CCWGG 2 cut(s) 1275, 1371
BstNSI RCATGY 2 cut(s) 78, 334
BstPI GGTNACC 1 cut(s) 968
BstSCI CCNGG 3 cut(s) 310, 1273, 1369
BstSLI GKGCMC 1 cut(s) 837
BstV1I GCAGC 2 cut(s) 937, 1102
BstV2I GAAGAC 2 cut(s) 183, 351
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 1377
BstYI RGATCY 1 cut(s) 859
BsuRI GGCC 4 cut(s) 982, 1248, 1278, 1384
BtgI CCRYGG 2 cut(s) 1043, 1298
BtsCI GGATG 4 cut(s) 247, 346, 499, 595
BtsI GCAGTG 2 cut(s) 541, 837
BtsIMutI CAGTG 4 cut(s) 28, 541, 741, 837
Cac8I GCNNGC 5 cut(s) 76, 332, 561, 1246, 1309
CciI TCATGA 1 cut(s) 1123
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 5 cut(s) 800, 1099, 1193, 1247, 1367
CseI GACGC 2 cut(s) 50, 1209
DdeI CTNAG 4 cut(s) 141, 251, 405, 786
DpnI GATC 3 cut(s) 246, 861, 1152
DpnII GATC 3 cut(s) 244, 859, 1150
DraI TTTAAA 1 cut(s) 732
DraIII CACNNNGTG 1 cut(s) 1049
EaeI YGGCCR 2 cut(s) 980, 1276
EciI GGCGGA 3 cut(s) 651, 771, 1047
Eco130I CCWWGG 1 cut(s) 1279
Eco31I GGTCTC 1 cut(s) 1020
Eco47I GGWCC 4 cut(s) 800, 1099, 1193, 1367
Eco88I CYCGRG 2 cut(s) 220, 848
Eco91I GGTNACC 1 cut(s) 968
EcoNI CCTNNNNNAGG 2 cut(s) 1209, 1278
EcoO65I GGTNACC 1 cut(s) 968
EcoRII CCWGG 2 cut(s) 1273, 1369
EcoT14I CCWWGG 1 cut(s) 1279
EcoT22I ATGCAT 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 1279
Esp3I CGTCTC 1 cut(s) 660
FaqI GGGAC 1 cut(s) 1112
FauI CCCGC 2 cut(s) 335, 442
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 951, 1091, 1382
FokI GGATG 4 cut(s) 254, 353, 506, 582
Fsp4HI GCNGC 3 cut(s) 951, 1091, 1382
FspBI CTAG 2 cut(s) 855, 1386
GlaI GCGC 1 cut(s) 215
GluI GCNGC 3 cut(s) 951, 1091, 1382
GsuI CTGGAG 2 cut(s) 564, 1186
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 4 cut(s) 982, 1248, 1278, 1384
HapII CCGG 1 cut(s) 311
HgaI GACGC 2 cut(s) 50, 1209
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 2 cut(s) 61, 1220
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 8 cut(s) 143, 176, 359, 546, 746, 851, 881, 1003
HpaII CCGG 1 cut(s) 311
HphI GGTGA 4 cut(s) 59, 379, 698, 1348
Hpy166II GTNNAC 3 cut(s) 517, 835, 1259
Hpy188I TCNGA 3 cut(s) 364, 408, 727
Hpy188III TCNNGA 8 cut(s) 140, 222, 620, 824, 855, 1124, 1205, 1256
Hpy8I GTNNAC 3 cut(s) 517, 835, 1259
Hpy99I CGWCG 3 cut(s) 159, 508, 1003
HpyAV CCTTC 5 cut(s) 100, 123, 610, 921, 964
HpyCH4III ACNGT 5 cut(s) 32, 350, 633, 999, 1302
HpyCH4V TGCA 7 cut(s) 74, 534, 559, 760, 830, 835, 1090
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 434, 1241
HpyF3I CTNAG 4 cut(s) 141, 251, 405, 786
Hsp92I GRCGYC 2 cut(s) 61, 1220
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 244, 859, 1150
LmnI GCTCC 5 cut(s) 221, 505, 997, 1147, 1240
Lsp1109I GCAGC 2 cut(s) 937, 1102
LweI GCATC 2 cut(s) 817, 864
MaeI CTAG 2 cut(s) 855, 1386
MaeIII GTNAC 4 cut(s) 385, 968, 1157, 1354
MalI GATC 3 cut(s) 246, 861, 1152
MboI GATC 3 cut(s) 244, 859, 1150
MboII GAAGA 5 cut(s) 183, 356, 428, 476, 854
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 837
MlsI TGGCCA 1 cut(s) 1278
MluCI AATT 5 cut(s) 150, 292, 807, 819, 916
MluNI TGGCCA 1 cut(s) 1278
MlyI GAGTC 3 cut(s) 152, 555, 860
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 1 cut(s) 1278
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 292, 358
MscI TGGCCA 1 cut(s) 1278
MseI TTAA 3 cut(s) 731, 810, 1020
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 1278
MspA1I CMGCKG 1 cut(s) 1164
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 3 cut(s) 312, 1275, 1371
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 2 cut(s) 1275, 1371
MwoI GCNNNNNNNGC 3 cut(s) 331, 434, 1241
NciI CCSGG 1 cut(s) 312
NdeI CATATG 1 cut(s) 162
NdeII GATC 3 cut(s) 244, 859, 1150
NlaIV GGNNCC 3 cut(s) 501, 1100, 1249
NmuCI GTSAC 3 cut(s) 385, 1157, 1354
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 78, 334
PaeI GCATGC 2 cut(s) 78, 334
PaeR7I CTCGAG 1 cut(s) 220
PagI TCATGA 1 cut(s) 1123
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 2 cut(s) 292, 358
PfeI GAWTC 5 cut(s) 176, 359, 746, 881, 1003
PflMI CCANNNNNTGG 1 cut(s) 1244
PfoI TCCNGGA 2 cut(s) 310, 1369
PkrI GCNGC 3 cut(s) 952, 1092, 1383
PleI GAGTC 3 cut(s) 151, 554, 859
PpsI GAGTC 3 cut(s) 151, 554, 859
Psp6I CCWGG 2 cut(s) 1273, 1369
PspEI GGTNACC 1 cut(s) 968
PspGI CCWGG 2 cut(s) 1273, 1369
PspN4I GGNNCC 3 cut(s) 501, 1100, 1249
PspPI GGNCC 5 cut(s) 800, 1099, 1193, 1247, 1367
PsuI RGATCY 1 cut(s) 859
PvuII CAGCTG 1 cut(s) 1164
RseI CAYNNNNRTG 1 cut(s) 840
SaqAI TTAA 3 cut(s) 731, 810, 1020
SatI GCNGC 3 cut(s) 951, 1091, 1382
Sau3AI GATC 3 cut(s) 244, 859, 1150
Sau96I GGNCC 5 cut(s) 800, 1099, 1193, 1247, 1367
SchI GAGTC 3 cut(s) 152, 555, 860
ScrFI CCNGG 3 cut(s) 312, 1275, 1371
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 2 cut(s) 817, 864
Sfr274I CTCGAG 1 cut(s) 220
SinI GGWCC 4 cut(s) 800, 1099, 1193, 1367
SlaI CTCGAG 1 cut(s) 220
SmiI ATTTAAAT 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 3 cut(s) 220, 335, 618
SmoI CTYRAG 3 cut(s) 220, 335, 618
SphI GCATGC 2 cut(s) 78, 334
Sse9I AATT 5 cut(s) 150, 292, 807, 819, 916
SsiI CCGC 8 cut(s) 328, 435, 611, 662, 782, 1058, 1331, 1381
SspI AATATT 1 cut(s) 931
SspMI CTAG 2 cut(s) 855, 1386
StyD4I CCNGG 3 cut(s) 310, 1273, 1369
StyI CCWWGG 1 cut(s) 1279
SwaI ATTTAAAT 1 cut(s) 732
TaaI ACNGT 5 cut(s) 32, 350, 633, 999, 1302
TaqI TCGA 3 cut(s) 221, 276, 1001
TaqII GACCGA 1 cut(s) 1116
TasI AATT 5 cut(s) 150, 292, 807, 819, 916
TauI GCSGC 1 cut(s) 1384
TfiI GAWTC 5 cut(s) 176, 359, 746, 881, 1003
Tru1I TTAA 3 cut(s) 731, 810, 1020
Tru9I TTAA 3 cut(s) 731, 810, 1020
TscAI CASTG 4 cut(s) 35, 541, 748, 837
TseFI GTSAC 3 cut(s) 385, 1157, 1354
TseI GCWGC 2 cut(s) 950, 1090
Tsp45I GTSAC 3 cut(s) 385, 1157, 1354
TspDTI ATGAA 8 cut(s) 294, 357, 429, 438, 516, 1075, 1140, 1148
TspGWI ACGGA 2 cut(s) 300, 492
TspRI CASTG 4 cut(s) 35, 541, 748, 837
Van91I CCANNNNNTGG 1 cut(s) 1244
VneI GTGCAC 1 cut(s) 833
VpaK11BI GGWCC 4 cut(s) 800, 1099, 1193, 1367
XagI CCTNNNNNAGG 2 cut(s) 1209, 1278
XbaI TCTAGA 1 cut(s) 854
XceI RCATGY 2 cut(s) 78, 334
XhoI CTCGAG 1 cut(s) 220
XmnI GAANNNNTTC 2 cut(s) 292, 358
XspI CTAG 2 cut(s) 855, 1386
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.