Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8000626.1

Orthogroup ID

OG0005320

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 526

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8000626.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

tctccagtatgtgatgacaattgccctggtggtagggactcatttgtggtaaatggagctctaagtgatattacaccttcaagagtttgcactcaaagtttggagaataggcctcagctttggaactcgaagaaggaccagtcttttggttgttcggctgatggtgaagctgttttacctccatctaagcgtcttcatcgtgctctagaagccatgtcagctaatgcagctgaagatgatgaaagatgtaactatgattcatcagccatgaggacatctgctattgattgtcataattcttgcatgaacacatgcgttactataactgtggaaagtaattcagggaatggtctgggtctgcatagtgatgactcttttggcaataatgcttcagggttctctaccagtccaaaccgtgtaatcttggagcaaaatactaaatcagcaatggaagtggatgtatgtgatcaaagaaggaatagtcctgataatcagaataatcagtgttccgttaatggtttcata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind GSHPx PWWP

Protein Analysis

175

Amino Acids

18.8

Weight (kDa)

4.65

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48160 AT2G48160 AT3G63070
fragaria_vesca	FvH4_2g23910 FvH4_2g23910 FvH4_2g23910
malus_domestica	MD03G1268600.v1.1 MD11G1289400.v1.1
prunus_persica	Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1
pyrus_communis	pycom11g25680
rosa_chinensis	RchiOBHm_Chr6g0291521 RchiOBHm_Chr6g0291531
rosa_laevigata	RLG00000012109
rosa_multiflora	Rmu_co8000626.1_g000001 Rmu_co8259725.1_g000001 Rmu_co8294861.1_g000001 Rmu_sc0012363.1_g000001 Rmu_sc0024207.1_g000004
rosa_roxburghii	Rroxscaffold_6G00405040 Rroxscaffold_7G00175990
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332300 Rh6BG339200 Rh6CG345400 Rh6DG332800
rosa_wichuraiana	Rw6G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	252, 375
AgsI	TTSAA	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	59, 118, 170, 221, 230
AluI	AGCT	5 cut(s)	59, 118, 170, 221, 230
Alw21I	GWGCWC	2 cut(s)	61, 205
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	61
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	61, 205
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	2 cut(s)	155, 190
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	25
Bse1I	ACTGG	3 cut(s)	5, 139, 405
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	5, 139, 405
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	61, 205
BslFI	GGGAC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	61, 205
Bsp143I	GATC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	5, 139, 405
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	328, 416
BstDEI	CTNAG	3 cut(s)	62, 114, 186
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 227
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	179
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	4 cut(s)	214, 268, 304, 312
CviJI	RGCY	9 cut(s)	59, 112, 118, 158, 170, 212, 221, 230, 266
CviKI_1	RGCY	9 cut(s)	59, 112, 118, 158, 170, 212, 221, 230, 266
DdeI	CTNAG	3 cut(s)	62, 114, 186
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	252, 375
EcoICRI	GAGCTC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	4 cut(s)	217, 271, 307, 315
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	4 cut(s)	213, 267, 303, 311
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	112
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	217, 271, 307, 315
HinfI	GANTC	3 cut(s)	38, 257, 371
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	3 cut(s)	81, 206, 485
HpyAV	CCTTC	3 cut(s)	87, 127, 468
HpyCH4III	ACNGT	2 cut(s)	328, 416
HpyCH4V	TGCA	4 cut(s)	90, 227, 303, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 227
HpyF3I	CTNAG	3 cut(s)	62, 114, 186
Hsp92II	CATG	4 cut(s)	217, 271, 307, 315
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	56, 427
LpnPI	CCDG	9 cut(s)	12, 18, 39, 152, 327, 338, 378, 418, 498
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	248, 316
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	142, 185, 245
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	61, 205
MluCI	AATT	3 cut(s)	19, 295, 337
MlyI	GAGTC	2 cut(s)	32, 365
MnlI	CCTC	3 cut(s)	123, 189, 264
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 227
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	217, 271, 307, 315
NspI	RCATGY	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	32, 365
PpsI	GAGTC	2 cut(s)	32, 365
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	32, 365
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	61, 205
SetI	ASST	7 cut(s)	61, 79, 120, 172, 181, 223, 232
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	19, 295, 337
SseBI	AGGCCT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	328, 416
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	19, 295, 337
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	509
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	5 cut(s)	185, 249, 255, 320, 511
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	315
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.