mRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G48160 AT2G48160 AT3G63070 |
| fragaria_vesca | FvH4_2g23910 FvH4_2g23910 FvH4_2g23910 |
| malus_domestica | MD03G1268600.v1.1 MD11G1289400.v1.1 |
| prunus_persica | Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 |
| pyrus_communis | pycom11g25680 |
| rosa_chinensis | RchiOBHm_Chr6g0291521 RchiOBHm_Chr6g0291531 |
| rosa_laevigata | RLG00000012109 |
| rosa_multiflora | Rmu_co8000626.1_g000001 Rmu_co8259725.1_g000001 Rmu_co8294861.1_g000001 Rmu_sc0012363.1_g000001 Rmu_sc0024207.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00405040 Rroxscaffold_7G00175990 |
| rosa_rugosa | Rorug06G0220200 |
| rosa_samantha | Rh6AG332300 Rh6BG339200 Rh6CG345400 Rh6DG332800 |
| rosa_wichuraiana | Rw6G028860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1855, 2049 |
| Acc65I | GGTACC | 1 cut(s) | 1843 |
| AccB1I | GGYRCC | 2 cut(s) | 566, 1843 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1903, 2680 |
| AccBSI | CCGCTC | 2 cut(s) | 53, 2993 |
| AccI | GTMKAC | 2 cut(s) | 3040, 3229 |
| AccII | CGCG | 2 cut(s) | 3694, 3946 |
| AclWI | GGATC | 6 cut(s) | 877, 1709, 2899, 2912, 2982, 4013 |
| AcoI | YGGCCR | 1 cut(s) | 2602 |
| AcsI | RAATTY | 9 cut(s) | 1168, 1412, 1552, 2329, 2376, 2636, 2664, 2695, 3740 |
| AcuI | CTGAAG | 5 cut(s) | 353, 390, 498, 1473, 1674 |
| AcvI | CACGTG | 2 cut(s) | 2318, 3584 |
| AfaI | GTAC | 4 cut(s) | 814, 1845, 2139, 2350 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1903, 2345, 2680, 3232, 3284 |
| AflIII | ACRYGT | 1 cut(s) | 3193 |
| AgeI | ACCGGT | 1 cut(s) | 679 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1498 |
| AjiI | CACGTC | 3 cut(s) | 841, 3268, 4029 |
| AjnI | CCWGG | 3 cut(s) | 1875, 3355, 4021 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 417, 449, 1362, 1394, 3404, 3436 |
| Alw21I | GWGCWC | 4 cut(s) | 690, 1606, 2750, 3884 |
| Alw26I | GTCTC | 6 cut(s) | 1506, 1703, 2042, 2555, 2588, 3798 |
| AlwI | GGATC | 6 cut(s) | 877, 1709, 2899, 2912, 2982, 4013 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 521, 2219, 2303 |
| Ama87I | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| ApaI | GGGCCC | 1 cut(s) | 1137 |
| ApoI | RAATTY | 9 cut(s) | 1168, 1412, 1552, 2329, 2376, 2636, 2664, 2695, 3740 |
| AsiGI | ACCGGT | 1 cut(s) | 679 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1659, 3064 |
| Asp718I | GGTACC | 1 cut(s) | 1843 |
| AspLEI | GCGC | 1 cut(s) | 3010 |
| AsuC2I | CCSGG | 2 cut(s) | 1806, 2088 |
| AsuII | TTCGAA | 2 cut(s) | 161, 1249 |
| AsuNHI | GCTAGC | 1 cut(s) | 532 |
| AvaI | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| AvaII | GGWCC | 8 cut(s) | 343, 732, 758, 3497, 3676, 3839, 3866, 3995 |
| AxyI | CCTNAGG | 1 cut(s) | 414 |
| BaeGI | GKGCMC | 1 cut(s) | 1137 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1827, 1860 |
| BamHI | GGATCC | 1 cut(s) | 2904 |
| BanI | GGYRCC | 2 cut(s) | 566, 1843 |
| BanII | GRGCYC | 3 cut(s) | 649, 1137, 3884 |
| BauI | CACGAG | 2 cut(s) | 1644, 3170 |
| BbrPI | CACGTG | 2 cut(s) | 2318, 3584 |
| BbsI | GAAGAC | 2 cut(s) | 3123, 3270 |
| Bbv12I | GWGCWC | 4 cut(s) | 690, 1606, 2750, 3884 |
| BccI | CCATC | 7 cut(s) | 746, 2653, 3131, 3239, 3550, 3628, 3655 |
| BceAI | ACGGC | 4 cut(s) | 104, 284, 962, 1560 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2850, 2884, 3473, 3507 |
| BciT130I | CCWGG | 3 cut(s) | 1877, 3357, 4023 |
| BcnI | CCSGG | 2 cut(s) | 1806, 2088 |
| BcoDI | GTCTC | 6 cut(s) | 1506, 1703, 2042, 2555, 2588, 3798 |
| BfaI | CTAG | 7 cut(s) | 351, 471, 533, 554, 1583, 1890, 3300 |
| BfmI | CTRYAG | 5 cut(s) | 900, 1401, 1527, 2042, 2919 |
| BfoI | RGCGCY | 1 cut(s) | 3011 |
| BfuAI | ACCTGC | 2 cut(s) | 1855, 2049 |
| BglII | AGATCT | 4 cut(s) | 592, 853, 1160, 3722 |
| BlpI | GCTNAGC | 1 cut(s) | 1437 |
| BmcAI | AGTACT | 1 cut(s) | 2139 |
| Bme1390I | CCNGG | 5 cut(s) | 1806, 1877, 2088, 3357, 4023 |
| Bme18I | GGWCC | 8 cut(s) | 343, 732, 758, 3497, 3676, 3839, 3866, 3995 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1498 |
| BmeT110I | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| BmgBI | CACGTC | 3 cut(s) | 841, 3268, 4029 |
| BmrFI | CCNGG | 5 cut(s) | 1806, 1877, 2088, 3357, 4023 |
| BmrI | ACTGGG | 1 cut(s) | 1698 |
| BmsI | GCATC | 9 cut(s) | 53, 499, 896, 964, 2164, 2206, 2265, 2758, 3904 |
| BmtI | GCTAGC | 1 cut(s) | 536 |
| BmuI | ACTGGG | 1 cut(s) | 1698 |
| BoxI | GACNNNNGTC | 1 cut(s) | 999 |
| BpiI | GAAGAC | 2 cut(s) | 3123, 3270 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3925, 3957 |
| BpmI | CTGGAG | 2 cut(s) | 2859, 3059 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1437 |
| Bpu14I | TTCGAA | 2 cut(s) | 161, 1249 |
| BpuEI | CTTGAG | 1 cut(s) | 604 |
| BpuMI | CCSGG | 2 cut(s) | 1806, 2088 |
| BsaAI | YACGTR | 2 cut(s) | 2318, 3584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 858 |
| BsaI | GGTCTC | 1 cut(s) | 2588 |
| BsaJI | CCNNGG | 8 cut(s) | 120, 1041, 1804, 2077, 3278, 3355, 3503, 4022 |
| BsaWI | WCCGGW | 2 cut(s) | 133, 679 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3688, 3718 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1903, 2345, 2680, 3232, 3284 |
| Bse118I | RCCGGY | 2 cut(s) | 679, 3494 |
| Bse1I | ACTGG | 7 cut(s) | 1086, 1693, 2135, 3048, 3237, 3741, 4004 |
| Bse21I | CCTNAGG | 1 cut(s) | 414 |
| Bse3DI | GCAATG | 3 cut(s) | 943, 2546, 3432 |
| Bse8I | GATNNNNATC | 1 cut(s) | 858 |
| BseBI | CCWGG | 3 cut(s) | 1877, 3357, 4023 |
| BseDI | CCNNGG | 8 cut(s) | 120, 1041, 1804, 2077, 3278, 3355, 3503, 4022 |
| BseJI | GATNNNNATC | 1 cut(s) | 858 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1903, 2345, 2680, 3232, 3284 |
| BseMI | GCAATG | 3 cut(s) | 943, 2546, 3432 |
| BseNI | ACTGG | 7 cut(s) | 1086, 1693, 2135, 3048, 3237, 3741, 4004 |
| BseRI | GAGGAG | 3 cut(s) | 254, 1848, 3630 |
| BseSI | GKGCMC | 1 cut(s) | 1137 |
| BseYI | CCCAGC | 2 cut(s) | 2833, 3470 |
| BsgI | GTGCAG | 5 cut(s) | 600, 848, 1356, 2232, 2550 |
| Bsh1236I | CGCG | 2 cut(s) | 3694, 3946 |
| BshNI | GGYRCC | 2 cut(s) | 566, 1843 |
| BshTI | ACCGGT | 1 cut(s) | 679 |
| BsiHKAI | GWGCWC | 4 cut(s) | 690, 1606, 2750, 3884 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| BsiSI | CCGG | 6 cut(s) | 134, 680, 1806, 2088, 3495, 3674 |
| BsiWI | CGTACG | 1 cut(s) | 812 |
| BslFI | GGGAC | 6 cut(s) | 1786, 1960, 2070, 2816, 3338, 4039 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1903, 2345, 2680, 3232, 3284 |
| BsmAI | GTCTC | 6 cut(s) | 1506, 1703, 2042, 2555, 2588, 3798 |
| BsmFI | GGGAC | 6 cut(s) | 1786, 1960, 2070, 2816, 3338, 4039 |
| BsmI | GAATGC | 2 cut(s) | 3418, 3985 |
| Bso31I | GGTCTC | 1 cut(s) | 2588 |
| BsoBI | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| Bsp119I | TTCGAA | 2 cut(s) | 161, 1249 |
| Bsp120I | GGGCCC | 1 cut(s) | 1133 |
| Bsp1286I | GDGCHC | 6 cut(s) | 649, 690, 1137, 1606, 2750, 3884 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1437 |
| Bsp19I | CCATGG | 1 cut(s) | 1041 |
| BspFNI | CGCG | 2 cut(s) | 3694, 3946 |
| BspHI | TCATGA | 5 cut(s) | 1003, 1174, 1366, 1390, 3850 |
| BspMAI | CTGCAG | 2 cut(s) | 1405, 2046 |
| BspMI | ACCTGC | 2 cut(s) | 1855, 2049 |
| BspOI | GCTAGC | 1 cut(s) | 536 |
| BspPI | GGATC | 6 cut(s) | 877, 1709, 2899, 2912, 2982, 4013 |
| BspT104I | TTCGAA | 2 cut(s) | 161, 1249 |
| BspT107I | GGYRCC | 2 cut(s) | 566, 1843 |
| BspTNI | GGTCTC | 1 cut(s) | 2588 |
| BsrBI | CCGCTC | 2 cut(s) | 53, 2993 |
| BsrDI | GCAATG | 3 cut(s) | 943, 2546, 3432 |
| BsrFI | RCCGGY | 2 cut(s) | 679, 3494 |
| BsrI | ACTGG | 7 cut(s) | 1086, 1693, 2135, 3048, 3237, 3741, 4004 |
| BssAI | RCCGGY | 2 cut(s) | 679, 3494 |
| BssECI | CCNNGG | 8 cut(s) | 120, 1041, 1804, 2077, 3278, 3355, 3503, 4022 |
| BssNAI | GTATAC | 2 cut(s) | 3041, 3230 |
| BssSI | CACGAG | 2 cut(s) | 1644, 3170 |
| BssT1I | CCWWGG | 4 cut(s) | 1041, 2077, 3278, 3503 |
| Bst1107I | GTATAC | 2 cut(s) | 3041, 3230 |
| Bst2BI | CACGAG | 2 cut(s) | 1644, 3170 |
| Bst2UI | CCWGG | 3 cut(s) | 1877, 3357, 4023 |
| Bst6I | CTCTTC | 6 cut(s) | 501, 1052, 1197, 1297, 1299, 3835 |
| BstBAI | YACGTR | 2 cut(s) | 2318, 3584 |
| BstBI | TTCGAA | 2 cut(s) | 161, 1249 |
| BstDSI | CCRYGG | 2 cut(s) | 120, 1041 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3282 |
| BstFNI | CGCG | 2 cut(s) | 3694, 3946 |
| BstH2I | RGCGCY | 1 cut(s) | 3011 |
| BstHHI | GCGC | 1 cut(s) | 3010 |
| BstMAI | GTCTC | 6 cut(s) | 1506, 1703, 2042, 2555, 2588, 3798 |
| BstNI | CCWGG | 3 cut(s) | 1877, 3357, 4023 |
| BstNSI | RCATGY | 4 cut(s) | 1146, 3197, 3478, 3580 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 999 |
| BstSCI | CCNGG | 5 cut(s) | 1804, 1875, 2086, 3355, 4021 |
| BstSFI | CTRYAG | 5 cut(s) | 900, 1401, 1527, 2042, 2919 |
| BstSLI | GKGCMC | 1 cut(s) | 1137 |
| BstUI | CGCG | 2 cut(s) | 3694, 3946 |
| BstV2I | GAAGAC | 2 cut(s) | 3123, 3270 |
| BstX2I | RGATCY | 7 cut(s) | 592, 853, 869, 1160, 2904, 3722, 4018 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 353, 3083, 4029 |
| BstYI | RGATCY | 7 cut(s) | 592, 853, 869, 1160, 2904, 3722, 4018 |
| BstZ17I | GTATAC | 2 cut(s) | 3041, 3230 |
| Bsu36I | CCTNAGG | 1 cut(s) | 414 |
| BtgI | CCRYGG | 2 cut(s) | 120, 1041 |
| BtgZI | GCGATG | 1 cut(s) | 2672 |
| BtrI | CACGTC | 3 cut(s) | 841, 3268, 4029 |
| BtsI | GCAGTG | 2 cut(s) | 754, 3301 |
| BveI | ACCTGC | 2 cut(s) | 1855, 2049 |
| CaiI | CAGNNNCTG | 3 cut(s) | 521, 2219, 2303 |
| CciI | TCATGA | 5 cut(s) | 1003, 1174, 1366, 1390, 3850 |
| CfoI | GCGC | 1 cut(s) | 3010 |
| Cfr10I | RCCGGY | 2 cut(s) | 679, 3494 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 4 cut(s) | 813, 1844, 2138, 2349 |
| CspAI | ACCGGT | 1 cut(s) | 679 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1821, 1856 |
| CviQI | GTAC | 4 cut(s) | 813, 1844, 2138, 2349 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1498 |
| EaeI | YGGCCR | 1 cut(s) | 2602 |
| Eam1104I | CTCTTC | 6 cut(s) | 501, 1052, 1197, 1297, 1299, 3835 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1498 |
| EarI | CTCTTC | 6 cut(s) | 501, 1052, 1197, 1297, 1299, 3835 |
| EciI | GGCGGA | 2 cut(s) | 3633, 3813 |
| Ecl136II | GAGCTC | 1 cut(s) | 3882 |
| Eco130I | CCWWGG | 4 cut(s) | 1041, 2077, 3278, 3503 |
| Eco147I | AGGCCT | 2 cut(s) | 419, 3784 |
| Eco24I | GRGCYC | 3 cut(s) | 649, 1137, 3884 |
| Eco31I | GGTCTC | 1 cut(s) | 2588 |
| Eco32I | GATATC | 3 cut(s) | 1777, 3818, 3848 |
| Eco47I | GGWCC | 8 cut(s) | 343, 732, 758, 3497, 3676, 3839, 3866, 3995 |
| Eco53kI | GAGCTC | 1 cut(s) | 3882 |
| Eco57I | CTGAAG | 5 cut(s) | 353, 390, 498, 1473, 1674 |
| Eco72I | CACGTG | 2 cut(s) | 2318, 3584 |
| Eco81I | CCTNAGG | 1 cut(s) | 414 |
| Eco88I | CYCGRG | 3 cut(s) | 1599, 1816, 3555 |
| EcoICRI | GAGCTC | 1 cut(s) | 3882 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3282 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1194, 3866, 3995 |
| EcoRI | GAATTC | 1 cut(s) | 2329 |
| EcoRII | CCWGG | 3 cut(s) | 1875, 3355, 4021 |
| EcoRV | GATATC | 3 cut(s) | 1777, 3818, 3848 |
| EcoT14I | CCWWGG | 4 cut(s) | 1041, 2077, 3278, 3503 |
| EcoT22I | ATGCAT | 2 cut(s) | 1144, 3525 |
| EcoT38I | GRGCYC | 3 cut(s) | 649, 1137, 3884 |
| ErhI | CCWWGG | 4 cut(s) | 1041, 2077, 3278, 3503 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1324, 1356 |
| FaqI | GGGAC | 6 cut(s) | 1786, 1960, 2070, 2816, 3338, 4039 |
| FauI | CCCGC | 1 cut(s) | 636 |
| FauNDI | CATATG | 1 cut(s) | 1476 |
| FblI | GTMKAC | 2 cut(s) | 3040, 3229 |
| FriOI | GRGCYC | 3 cut(s) | 649, 1137, 3884 |
| FspBI | CTAG | 7 cut(s) | 351, 471, 533, 554, 1583, 1890, 3300 |
| GlaI | GCGC | 1 cut(s) | 3009 |
| GsaI | CCCAGC | 2 cut(s) | 2837, 3474 |
| GsuI | CTGGAG | 2 cut(s) | 2859, 3059 |
| HaeII | RGCGCY | 1 cut(s) | 3011 |
| HapII | CCGG | 6 cut(s) | 134, 680, 1806, 2088, 3495, 3674 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 1 cut(s) | 3010 |
| Hin6I | GCGC | 1 cut(s) | 3008 |
| HinP1I | GCGC | 1 cut(s) | 3008 |
| HincII | GTYRAC | 3 cut(s) | 127, 492, 2467 |
| HindII | GTYRAC | 3 cut(s) | 127, 492, 2467 |
| HindIII | AAGCTT | 1 cut(s) | 1439 |
| HpaII | CCGG | 6 cut(s) | 134, 680, 1806, 2088, 3495, 3674 |
| Hpy166II | GTNNAC | 8 cut(s) | 127, 178, 492, 1572, 2467, 3041, 3230, 3842 |
| Hpy8I | GTNNAC | 8 cut(s) | 127, 178, 492, 1572, 2467, 3041, 3230, 3842 |
| Hpy99I | CGWCG | 1 cut(s) | 1318 |
| HpyCH4IV | ACGT | 7 cut(s) | 815, 840, 1078, 2317, 3267, 3583, 4028 |
| HpySE526I | ACGT | 7 cut(s) | 815, 840, 1078, 2317, 3267, 3583, 4028 |
| HspAI | GCGC | 1 cut(s) | 3008 |
| KpnI | GGTACC | 1 cut(s) | 1847 |
| LmnI | GCTCC | 7 cut(s) | 10, 664, 2269, 2753, 2840, 3277, 3670 |
| LweI | GCATC | 9 cut(s) | 53, 499, 896, 964, 2164, 2206, 2265, 2758, 3904 |
| MaeI | CTAG | 7 cut(s) | 351, 471, 533, 554, 1583, 1890, 3300 |
| MaeII | ACGT | 7 cut(s) | 815, 840, 1078, 2317, 3267, 3583, 4028 |
| MbiI | CCGCTC | 2 cut(s) | 53, 2993 |
| MfeI | CAATTG | 1 cut(s) | 3808 |
| MflI | RGATCY | 7 cut(s) | 592, 853, 869, 1160, 2904, 3722, 4018 |
| MhlI | GDGCHC | 6 cut(s) | 649, 690, 1137, 1606, 2750, 3884 |
| MmeI | TCCRAC | 2 cut(s) | 690, 1894 |
| Mph1103I | ATGCAT | 2 cut(s) | 1144, 3525 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1659, 3064 |
| MseI | TTAA | 6 cut(s) | 1011, 1047, 1416, 1926, 2459, 2819 |
| MslI | CAYNNNNRTG | 6 cut(s) | 219, 564, 1371, 1743, 3372, 3900 |
| MspA1I | CMGCKG | 3 cut(s) | 409, 518, 2837 |
| MspI | CCGG | 6 cut(s) | 134, 680, 1806, 2088, 3495, 3674 |
| MspR9I | CCNGG | 5 cut(s) | 1806, 1877, 2088, 3357, 4023 |
| MunI | CAATTG | 1 cut(s) | 3808 |
| Mva1269I | GAATGC | 2 cut(s) | 3418, 3985 |
| MvaI | CCWGG | 3 cut(s) | 1877, 3357, 4023 |
| MvnI | CGCG | 2 cut(s) | 3694, 3946 |
| NciI | CCSGG | 2 cut(s) | 1806, 2088 |
| NcoI | CCATGG | 1 cut(s) | 1041 |
| NdeI | CATATG | 1 cut(s) | 1476 |
| NheI | GCTAGC | 1 cut(s) | 532 |
| NmeAIII | GCCGAG | 3 cut(s) | 83, 2630, 2962 |
| NsiI | ATGCAT | 2 cut(s) | 1144, 3525 |
| NspI | RCATGY | 4 cut(s) | 1146, 3197, 3478, 3580 |
| NspV | TTCGAA | 2 cut(s) | 161, 1249 |
| PaeI | GCATGC | 2 cut(s) | 3478, 3580 |
| PaeR7I | CTCGAG | 2 cut(s) | 1599, 1816 |
| PagI | TCATGA | 5 cut(s) | 1003, 1174, 1366, 1390, 3850 |
| PceI | AGGCCT | 2 cut(s) | 419, 3784 |
| PciI | ACATGT | 1 cut(s) | 3193 |
| PctI | GAATGC | 2 cut(s) | 3418, 3985 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1659, 3064 |
| Pfl23II | CGTACG | 1 cut(s) | 812 |
| PflFI | GACNNNGTC | 1 cut(s) | 2471 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1903, 2680 |
| PfoI | TCCNGGA | 1 cut(s) | 1875 |
| PinAI | ACCGGT | 1 cut(s) | 679 |
| PmaCI | CACGTG | 2 cut(s) | 2318, 3584 |
| PmlI | CACGTG | 2 cut(s) | 2318, 3584 |
| Ppu21I | YACGTR | 2 cut(s) | 2318, 3584 |
| PpuMI | RGGWCCY | 2 cut(s) | 3866, 3995 |
| PscI | ACATGT | 1 cut(s) | 3193 |
| PshAI | GACNNNNGTC | 1 cut(s) | 999 |
| Psp124BI | GAGCTC | 1 cut(s) | 3884 |
| Psp5II | RGGWCCY | 2 cut(s) | 3866, 3995 |
| Psp6I | CCWGG | 3 cut(s) | 1875, 3355, 4021 |
| PspCI | CACGTG | 2 cut(s) | 2318, 3584 |
| PspFI | CCCAGC | 2 cut(s) | 2833, 3470 |
| PspGI | CCWGG | 3 cut(s) | 1875, 3355, 4021 |
| PspLI | CGTACG | 1 cut(s) | 812 |
| PspOMI | GGGCCC | 1 cut(s) | 1133 |
| PspPPI | RGGWCCY | 2 cut(s) | 3866, 3995 |
| PspXI | VCTCGAGB | 2 cut(s) | 1599, 1816 |
| PstI | CTGCAG | 2 cut(s) | 1405, 2046 |
| PstNI | CAGNNNCTG | 3 cut(s) | 521, 2219, 2303 |
| PsuI | RGATCY | 7 cut(s) | 592, 853, 869, 1160, 2904, 3722, 4018 |
| PsyI | GACNNNGTC | 1 cut(s) | 2471 |
| PvuII | CAGCTG | 3 cut(s) | 409, 518, 2837 |
| RsaI | GTAC | 4 cut(s) | 814, 1845, 2139, 2350 |
| RsaNI | GTAC | 4 cut(s) | 813, 1844, 2138, 2349 |
| RseI | CAYNNNNRTG | 6 cut(s) | 219, 564, 1371, 1743, 3372, 3900 |
| SacI | GAGCTC | 1 cut(s) | 3884 |
| SaqAI | TTAA | 6 cut(s) | 1011, 1047, 1416, 1926, 2459, 2819 |
| SbfI | CCTGCAGG | 1 cut(s) | 2046 |
| ScaI | AGTACT | 1 cut(s) | 2139 |
| ScrFI | CCNGG | 5 cut(s) | 1806, 1877, 2088, 3357, 4023 |
| SdaI | CCTGCAGG | 1 cut(s) | 2046 |
| SduI | GDGCHC | 6 cut(s) | 649, 690, 1137, 1606, 2750, 3884 |
| SfaNI | GCATC | 9 cut(s) | 53, 499, 896, 964, 2164, 2206, 2265, 2758, 3904 |
| SfcI | CTRYAG | 5 cut(s) | 900, 1401, 1527, 2042, 2919 |
| Sfr274I | CTCGAG | 2 cut(s) | 1599, 1816 |
| SfuI | TTCGAA | 2 cut(s) | 161, 1249 |
| SinI | GGWCC | 8 cut(s) | 343, 732, 758, 3497, 3676, 3839, 3866, 3995 |
| SlaI | CTCGAG | 2 cut(s) | 1599, 1816 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 219, 564, 1371, 1743, 3372, 3900 |
| SmlI | CTYRAG | 3 cut(s) | 619, 1599, 1816 |
| SmoI | CTYRAG | 3 cut(s) | 619, 1599, 1816 |
| SphI | GCATGC | 2 cut(s) | 3478, 3580 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2046 |
| SseBI | AGGCCT | 2 cut(s) | 419, 3784 |
| SspI | AATATT | 1 cut(s) | 675 |
| SspMI | CTAG | 7 cut(s) | 351, 471, 533, 554, 1583, 1890, 3300 |
| SstI | GAGCTC | 1 cut(s) | 3884 |
| StuI | AGGCCT | 2 cut(s) | 419, 3784 |
| StyD4I | CCNGG | 5 cut(s) | 1804, 1875, 2086, 3355, 4021 |
| StyI | CCWWGG | 4 cut(s) | 1041, 2077, 3278, 3503 |
| TaiI | ACGT | 7 cut(s) | 818, 843, 1081, 2320, 3270, 3586, 4031 |
| TaqI | TCGA | 8 cut(s) | 161, 1249, 1316, 1600, 1817, 2995, 3802, 3878 |
| TatI | WGTACW | 1 cut(s) | 2137 |
| TauI | GCSGC | 4 cut(s) | 15, 41, 44, 1996 |
| Tru1I | TTAA | 6 cut(s) | 1011, 1047, 1416, 1926, 2459, 2819 |
| Tru9I | TTAA | 6 cut(s) | 1011, 1047, 1416, 1926, 2459, 2819 |
| TspGWI | ACGGA | 6 cut(s) | 284, 800, 882, 1011, 2917, 3543 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2471 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1903, 2680 |
| VpaK11BI | GGWCC | 8 cut(s) | 343, 732, 758, 3497, 3676, 3839, 3866, 3995 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3282 |
| XapI | RAATTY | 9 cut(s) | 1168, 1412, 1552, 2329, 2376, 2636, 2664, 2695, 3740 |
| XceI | RCATGY | 4 cut(s) | 1146, 3197, 3478, 3580 |
| XhoI | CTCGAG | 2 cut(s) | 1599, 1816 |
| XmiI | GTMKAC | 2 cut(s) | 3040, 3229 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1659, 3064 |
| XspI | CTAG | 7 cut(s) | 351, 471, 533, 554, 1583, 1890, 3300 |
| ZrmI | AGTACT | 1 cut(s) | 2139 |
| Zsp2I | ATGCAT | 2 cut(s) | 1144, 3525 |