Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8259725.1

Orthogroup ID

OG0005320

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 806

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8259725.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 805 bp

gttgatgagttaaactctagtgcaaatggtgggaactcagtcgattcttcatgcaattttggttcaaaggatcagaaagaagctcctgaagcaattcttgatttatgtccaaaatcttcatcttctaccattgataaaaatgagccaagtaattctgttgaggatgcttcggctactgcactagtagatgccacccttaataaggaggacttaattgaggaacctgctgctaccacaatggtttctgaaacacctgtgccaataacctgctcttcaagaaaaagatctggtgacttgcgattacagagctgtgtctcaaagagagaggaagcaccagctcgtaggtcaagaagctcatccaggacggaatcacgtaaattacggaacttcataatgccacgtgatgatgatgccaagaatgctgtagatatatctggtaatgcagttcaggacagaagtttaagaaggaataaacgaacacggaaatcacctgatgcctccatatgtgatgatgttaaattggctgcttgtgtttcaaatggttgtgctgaagatgatggttctgaagttgttccagttgattctagcacatttagtttgaacgacggcagtgttactgattctggttgtaaaggagagcactcagagactgttgttgaatgcttggaaggagatgctgagttgatcaaaggtcttgatctccaaataaaggcttttagtaagaagaaaaggaaaccaaacagaaagcgagttactaatgatgcagctgagcctattgctatattggacaaggagacagttcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind GSHPx PWWP

Protein Analysis

268

Amino Acids

28.82

Weight (kDa)

5.09

Isoelectric Point (pI)

68.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48160 AT2G48160 AT3G63070
fragaria_vesca	FvH4_2g23910 FvH4_2g23910 FvH4_2g23910
malus_domestica	MD03G1268600.v1.1 MD11G1289400.v1.1
prunus_persica	Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1
pyrus_communis	pycom11g25680
rosa_chinensis	RchiOBHm_Chr6g0291521 RchiOBHm_Chr6g0291531
rosa_laevigata	RLG00000012109
rosa_multiflora	Rmu_co8000626.1_g000001 Rmu_co8259725.1_g000001 Rmu_co8294861.1_g000001 Rmu_sc0012363.1_g000001 Rmu_sc0024207.1_g000004
rosa_roxburghii	Rroxscaffold_6G00405040 Rroxscaffold_7G00175990
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332300 Rh6BG339200 Rh6CG345400 Rh6DG332800
rosa_wichuraiana	Rw6G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	232, 275
AclWI	GGATC	1 cut(s)	78
AcuI	CTGAAG	3 cut(s)	108, 570, 585
AcvI	CACGTG	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	202, 709
AgsI	TTSAA	6 cut(s)	66, 276, 537, 601, 659, 803
AhlI	ACTAGT	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	5 cut(s)	83, 309, 338, 354, 767
AluI	AGCT	5 cut(s)	83, 309, 338, 354, 767
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	3 cut(s)	319, 641, 788
AlwI	GGATC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	650
ApeKI	GCWGC	3 cut(s)	227, 524, 764
Asp700I	GAANNNNTTC	2 cut(s)	93, 570
AsuHPI	GGTGA	2 cut(s)	302, 480
BbrPI	CACGTG	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	214, 511, 776
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	1 cut(s)	361
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	319, 641, 788
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	3 cut(s)	18, 182, 585
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	2 cut(s)	232, 275
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	3 cut(s)	228, 525, 765
BlpI	GCTNAGC	1 cut(s)	768
BlsI	GCNGC	3 cut(s)	229, 526, 766
Bme1390I	CCNGG	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	6 cut(s)	154, 178, 400, 484, 664, 751
BplI	GAGNNNNNCTC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	768
BsaAI	YACGTR	2 cut(s)	374, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 709
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	169, 356
BseLI	CCNNNNNNNGG	2 cut(s)	202, 709
BseMII	CTCAG	4 cut(s)	51, 657, 669, 759
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	214, 511, 776
BsgI	GTGCAG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	202, 709
BsmAI	GTCTC	3 cut(s)	319, 641, 788
BsmI	GAATGC	2 cut(s)	424, 665
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	70, 284, 684, 697
Bsp1720I	GCTNAGC	1 cut(s)	768
BspCNI	CTCAG	4 cut(s)	50, 656, 670, 760
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	2 cut(s)	232, 275
BspPI	GGATC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	575
BssMI	GATC	4 cut(s)	70, 284, 684, 697
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	652, 799
Bst6I	CTCTTC	1 cut(s)	277
BstBAI	YACGTR	2 cut(s)	374, 401
BstDEI	CTNAG	4 cut(s)	37, 643, 678, 768
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	169, 356
BstKTI	GATC	4 cut(s)	73, 287, 687, 700
BstMAI	GTCTC	3 cut(s)	319, 641, 788
BstMBI	GATC	4 cut(s)	70, 284, 684, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 419
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	214, 511, 776
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	169, 356
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	2 cut(s)	232, 275
CaiI	CAGNNNCTG	1 cut(s)	650
CviAII	CATG	1 cut(s)	51
DdeI	CTNAG	4 cut(s)	37, 643, 678, 768
DpnI	GATC	4 cut(s)	72, 286, 686, 699
DpnII	GATC	4 cut(s)	70, 284, 684, 697
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	108, 570, 585
Eco72I	CACGTG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	359
FaeI	CATG	1 cut(s)	54
FaiI	YATR	7 cut(s)	52, 106, 392, 431, 503, 505, 782
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 194, 226
FatI	CATG	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	3 cut(s)	228, 525, 765
FokI	GGATG	2 cut(s)	176, 343
Fsp4HI	GCNGC	3 cut(s)	228, 525, 765
FspBI	CTAG	3 cut(s)	18, 182, 585
GluI	GCNGC	3 cut(s)	228, 525, 765
Hin1II	CATG	1 cut(s)	54
HinfI	GANTC	4 cut(s)	44, 368, 581, 620
HphI	GGTGA	2 cut(s)	302, 480
Hpy188I	TCNGA	4 cut(s)	75, 247, 565, 646
Hpy188III	TCNNGA	6 cut(s)	86, 98, 276, 348, 449, 695
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	2 cut(s)	459, 662
HpyCH4III	ACNGT	2 cut(s)	652, 799
HpyCH4IV	ACGT	2 cut(s)	373, 400
HpyCH4V	TGCA	5 cut(s)	23, 54, 179, 443, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 419
HpyF3I	CTNAG	4 cut(s)	37, 643, 678, 768
HpySE526I	ACGT	2 cut(s)	373, 400
Hsp92II	CATG	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	70, 284, 684, 697
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	214, 511, 776
LweI	GCATC	6 cut(s)	154, 178, 400, 484, 664, 751
MaeI	CTAG	3 cut(s)	18, 182, 585
MaeII	ACGT	2 cut(s)	373, 400
MaeIII	GTNAC	3 cut(s)	290, 613, 751
MalI	GATC	4 cut(s)	72, 286, 686, 699
MboI	GATC	4 cut(s)	70, 284, 684, 697
MboII	GAAGA	6 cut(s)	39, 108, 114, 264, 563, 736
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	6 cut(s)	55, 93, 151, 213, 377, 518
MnlI	CCTC	5 cut(s)	154, 199, 211, 319, 508
MroXI	GAANNNNTTC	2 cut(s)	93, 570
MseI	TTAA	5 cut(s)	11, 198, 212, 461, 516
MspA1I	CMGCKG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	2 cut(s)	424, 665
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	89, 419
NdeI	CATATG	1 cut(s)	503
NdeII	GATC	4 cut(s)	70, 284, 684, 697
NlaIII	CATG	1 cut(s)	54
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	2 cut(s)	424, 665
PdmI	GAANNNNTTC	2 cut(s)	93, 570
PfeI	GAWTC	4 cut(s)	44, 368, 581, 620
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	229, 526, 766
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
Ppu21I	YACGTR	2 cut(s)	374, 401
Psp6I	CCWGG	1 cut(s)	359
PspCI	CACGTG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	767
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	11, 198, 212, 461, 516
SatI	GCNGC	3 cut(s)	228, 525, 765
Sau3AI	GATC	4 cut(s)	70, 284, 684, 697
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	642
SfaNI	GCATC	6 cut(s)	154, 178, 400, 484, 664, 751
SfcI	CTRYAG	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	6 cut(s)	55, 93, 151, 213, 377, 518
SspMI	CTAG	3 cut(s)	18, 182, 585
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	652, 799
TaiI	ACGT	2 cut(s)	376, 403
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	55, 93, 151, 213, 377, 518
TfiI	GAWTC	4 cut(s)	44, 368, 581, 620
Tru1I	TTAA	5 cut(s)	11, 198, 212, 461, 516
Tru9I	TTAA	5 cut(s)	11, 198, 212, 461, 516
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	227, 524, 764
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	39, 108, 379
TspGWI	ACGGA	3 cut(s)	380, 397, 496
TspRI	CASTG	1 cut(s)	616
XagI	CCTNNNNNAGG	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	93, 570
XspI	CTAG	3 cut(s)	18, 182, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.