Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294861.1

Orthogroup ID

OG0005320

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 762

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 676 bp

acaggttttgaaactttggttggagagaaggattgttcctgagtccataattcgtcgccatatgcgagaacttgattctctgggtgggtcttctgctggtgcttattgtcggcgctcctcgagaacagaaaggtctttggatgatcctcttagagagatggagggtatgcttgtcgatgaatacggaagtaattcaagttttcaacttccgggattttgtatgccccgcatgctcaaggatgaagacggtggaagtgattctgatggggagagttttgaggctgtcacccctgaacataatcctcagactaatgaagaacatgaagccactcccgcaactgaaaggcataggcatatcttggaagatgttgatggagaacttgaaatggaggatgtggctccgtcgtgtgatgttgacatgagttcatcttgcagtgttgctggagtcaatgtcgtgcaggcttcacataatcagtttgaacaacattttccacatccctttgcccctccgctacctcaagatgtgccaccgtcatctcctcctctaccatcgtctcctccgcccccaccgccaccagcacctctaccccctcctcatgtcattcaccctccatgtgctacttctgatttaaatccatacactgattcacatgtgcgtttttgttttctatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind GSHPx PWWP

Protein Analysis

224

Amino Acids

24.81

Weight (kDa)

4.74

Isoelectric Point (pI)

82.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48160 AT2G48160 AT3G63070
fragaria_vesca	FvH4_2g23910 FvH4_2g23910 FvH4_2g23910
malus_domestica	MD03G1268600.v1.1 MD11G1289400.v1.1
prunus_persica	Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1 Prupe.8G244400_v2.0.a1
pyrus_communis	pycom11g25680
rosa_chinensis	RchiOBHm_Chr6g0291521 RchiOBHm_Chr6g0291531
rosa_laevigata	RLG00000012109
rosa_multiflora	Rmu_co8000626.1_g000001 Rmu_co8259725.1_g000001 Rmu_co8294861.1_g000001 Rmu_sc0012363.1_g000001 Rmu_sc0024207.1_g000004
rosa_roxburghii	Rroxscaffold_6G00405040 Rroxscaffold_7G00175990
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332300 Rh6BG339200 Rh6CG345400 Rh6DG332800
rosa_wichuraiana	Rw6G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	227, 334, 510, 561, 570
AclWI	GGATC	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	650
AgsI	TTSAA	5 cut(s)	11, 196, 204, 384, 480
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	119
Asp700I	GAANNNNTTC	2 cut(s)	191, 257
AspLEI	GCGC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	278, 597
AvaI	CYCGRG	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	82, 250
BccI	CCATC	4 cut(s)	152, 258, 366, 557
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	559
BfoI	RGCGCY	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	82, 250
BpmI	CTGGAG	1 cut(s)	463
BpuEI	CTTGAG	2 cut(s)	219, 502
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bse8I	GATNNNNATC	1 cut(s)	631
BseGI	GGATG	4 cut(s)	146, 245, 398, 494
BseJI	GATNNNNATC	1 cut(s)	631
BseMII	CTCAG	2 cut(s)	31, 318
BseRI	GAGGAG	5 cut(s)	107, 529, 532, 547, 583
BsgI	GTGCAG	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	559
BsmBI	CGTCTC	1 cut(s)	559
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	5 cut(s)	227, 334, 510, 561, 570
BspCNI	CTCAG	2 cut(s)	32, 317
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	138
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	249, 532
BstC8I	GCNNGC	2 cut(s)	231, 460
BstDEI	CTNAG	3 cut(s)	40, 150, 304
BstF5I	GGATG	4 cut(s)	146, 245, 398, 494
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 333, 569
BstNSI	RCATGY	2 cut(s)	233, 654
BstSCI	CCNGG	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	82, 250
BtsCI	GGATG	4 cut(s)	146, 245, 398, 494
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	440, 640
Cac8I	GCNNGC	2 cut(s)	231, 460
CfoI	GCGC	1 cut(s)	115
CviAII	CATG	6 cut(s)	230, 321, 419, 597, 613, 651
CviJI	RGCY	4 cut(s)	282, 327, 399, 462
CviKI_1	RGCY	4 cut(s)	282, 327, 399, 462
DdeI	CTNAG	3 cut(s)	40, 150, 304
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
DraI	TTTAAA	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	6 cut(s)	233, 324, 422, 600, 616, 654
FatI	CATG	6 cut(s)	229, 320, 418, 596, 612, 650
FauI	CCCGC	2 cut(s)	234, 341
FauNDI	CATATG	1 cut(s)	61
FokI	GGATG	4 cut(s)	153, 252, 405, 481
GlaI	GCGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	116
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	233, 324, 422, 600, 616, 654
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	5 cut(s)	42, 75, 258, 445, 645
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	278, 597
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	263, 307, 626
Hpy188III	TCNNGA	3 cut(s)	39, 121, 519
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	2 cut(s)	58, 407
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	249, 532
HpyCH4V	TGCA	2 cut(s)	433, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 333, 569
HpyF3I	CTNAG	3 cut(s)	40, 150, 304
Hsp92II	CATG	6 cut(s)	233, 324, 422, 600, 616, 654
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	120, 404
LpnPI	CCDG	8 cut(s)	52, 66, 82, 223, 304, 427, 444, 589
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	4 cut(s)	82, 255, 327, 375
MluCI	AATT	2 cut(s)	49, 191
MlyI	GAGTC	2 cut(s)	51, 454
MroXI	GAANNNNTTC	2 cut(s)	191, 257
MseI	TTAA	2 cut(s)	630, 674
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	3 cut(s)	230, 333, 569
NciI	CCSGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	6 cut(s)	233, 324, 422, 600, 616, 654
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	2 cut(s)	233, 654
PaeI	GCATGC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	2 cut(s)	191, 257
PfeI	GAWTC	3 cut(s)	75, 258, 645
PfoI	TCCNGGA	1 cut(s)	209
PleI	GAGTC	2 cut(s)	50, 453
PpsI	GAGTC	2 cut(s)	50, 453
PscI	ACATGT	1 cut(s)	650
PspN4I	GGNNCC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	630, 674
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	51, 454
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	4 cut(s)	7, 135, 518, 584
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiI	ATTTAAAT	1 cut(s)	631
SmlI	CTYRAG	3 cut(s)	119, 234, 517
SmoI	CTYRAG	3 cut(s)	119, 234, 517
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	49, 191
SsiI	CCGC	5 cut(s)	227, 334, 510, 561, 570
StyD4I	CCNGG	1 cut(s)	209
SwaI	ATTTAAAT	1 cut(s)	631
TaaI	ACNGT	2 cut(s)	249, 532
TaqI	TCGA	2 cut(s)	120, 175
TasI	AATT	2 cut(s)	49, 191
TfiI	GAWTC	3 cut(s)	75, 258, 645
Tru1I	TTAA	2 cut(s)	630, 674
Tru9I	TTAA	2 cut(s)	630, 674
TscAI	CASTG	2 cut(s)	440, 647
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	193, 256, 328, 337, 415
TspGWI	ACGGA	2 cut(s)	199, 391
TspRI	CASTG	2 cut(s)	440, 647
XceI	RCATGY	2 cut(s)	233, 654
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	2 cut(s)	191, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.