MD03G1268600.v1.1

HUA2-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
35331803 .. 35341974
10172 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1268600.v1.1.491

Sequence Viewer

Length: 4290 bp
ATGGCGCCCAGCCGGAGGAAGGGAGTTAGCAAGGCCGCTCAGGCCGCCGCTGCTCGCCGCCAATGGAAGGTCGGCGATCTTGTTCTTGCTAAAGTCAAAGGCTTCCCCGCATGGCCGGCTACCGTAAGTGAACCAGAGAAGTGGGGCTACTCTGCTGATTGGAAGAAAGTACTAGTCTTCTTCTTTGGAACCCAACAGATAGCGTTCTGCAACCCTGCAGACGTTGAGGCATTTACCGAGGAGAAAAAACAGTCTCTTCTGGGCAAGCGTCATGGAAAAGGCGCTGATTTTGTTCGTGCAGTCAAGGAGATTATTGATAGTTATGATAAGCTGAAGAAAGAGGACCAAGTTGATGACTTCAAATCCACCGCAAATGGAAGGAATACAGTGGATTCTTTGTCCAACTTGCGTTCAGAGGATCAGTCAGAAGCTCCTGAAGCAATTCTGGATTCACATTCTAAATCTTCACATTCAACAATTGATAGAAATGAGCCAAGTGTTTCTGTCGAGGATGCTTCAGCAACTGCACAAGTGGATGCTATGCACGATAAGGAGGCCTTAATTGAGGAACCTGGTGCTACAGCAACAGTTACTGAAACACCTCTTCCAGTGACCTCCTCTTCAAGAAAGAGATCAAGAGACTTGCGATCACAGAAAGAGGAAGTACCAGCTCGTAGGTCGAGAAGTTCATCCAGGATGGAATCACGTAGAGTACGCAACTCAAGAATGTCATGTGATGATGATGACAAGAATGCTGGGGAAGTATCTGGTAATGTAGTTCGGAACAGATGTCTAAGAAGGAATAAACGAATACGGAAATCACCTGATGCCTCTGAGTGTGATGATGTGAATTCAGCTGCTTTTGTTTCAAATGGTTGTATTGAAGATAACGGTTCTGAAGTTGCGACAGTTGATTCTGACACATTTAGTCTGAATGAAGGCAGTGCTGTTGATTCTGGTTGTAAAGGTGAACACTCAGAGGCTGTTGCCGAATGCTTGGATGGCGATGCTGAGTTGGTCAAAGGACTTGATCTCCAAATAAAGGCTGTTGTTATCAAGAAGAAAAGGAAGCCAAACAGAAAGCGAATTACTAATGATGCAGCTGAGCCTATTGCTATGGTGGACAAGGAGACAGTTTTAGAGGTAAAGCAAAGTAGTAATCAAACTATGCAGAATGATTGTGGGAAGATGAATGGAAATTCCTCCAAGGAAGATGGAGATGAGCACCTGCCATTGGTGAAACGAGCCAGGGTGCGAATGGGCAAACCATGTTCTGCTCACGAGGAAGTAGATAGCTTTGCACACACTGAAGAAAGTCACAAGGAAGTTGTACTCAATCCATTGGGGCCAGTTAGCACATCATCAAATTGTGACGAAAATTGCCCTTCTGGTAGGGACTTGTCTGTGGTAAATGAGGTTTTGGATAATATTACACCATCCGGAGGTTGCACTAGCATTTTGGGAAACAGACCTCAGCTTTGGAACACCAAGAAAGACCAATCATTTGGTTGCTCGGTTGATGGTGAAGCTGTTTTACCTCCATCTAAGCGTCTTCATCGCGCTCTAGAAGCCATGTCAGCTAATGCTGCTGAAGATGATAGATGTAATTATGATTCTTCAGTCACAAAGACTTCTACTATTGGTTGTCATCATTCTTCCACAAGCACATGCCCTGCTACGACTGTAGAAAGTAATACAGGGACTGGATTGGGACTGCAGAGTGAAGACTCTTTGGGCATTAATGCTTCAGGGGTTGATGCTTTCGGATTCTCTACCAGTTTAAACCCTGTAGTCTTGGAGGAAAATGGTAAATCAGTTGTGGAAGTGAATGCCGATAAAAAAACTGAGAGTCTGAACACCCAAAGTCATGAATGCTCTATTAATGAGTTACCAGATTCTGGAGACCATGTTGGTGGTAAAGATCTTAGTGGTGGTTCTTCTGATTGTCACATTATGGGAAGTCTAGGGCATTTGTCGCCTAATATGGACAGAGGCGAGGCTGGTACTGGGCTTAATGAAAGTTCAATTGACGAGTTGCCTATGAAGGACAAAAACAAAGACAAAGATGAATTGAGCCATTGTGAAGCAGAAAATCCTGATATTGAATGTGGTACTTCAGAGCATACTTTGAAGAGCATAGATCCTCCCGTATCAGGCACCAACCATGGAATTTATGAATTTCCACCTTTAAATGTGGCTAGTCCACTTCATTATGGTGGAGAGGGCCCCGGTGAGAAAGTTGAGGGTTTGGAATCCCACGTTCAAGATATCAGAGAAGTCAATGACATCTTTGATGTGGTGAAAGTGGTGAAAGAGGTTCAAAATAAACAAACAGAGAATGATCCAAGTTCAATTTCATATCCAAATGAATACCTGGGTGATAAAAATGTCTCTGGCATCCGGTCAAGTCCGTCCCTAACAGATGGAGGAGATTCTATTGCACATGCATCACCTCTCAATACGTCAGGCTGTCGCATGTCGACTTCAGATAGTAGTAATATTCTTCAGAACAATGGCAGTTGTAGTCCAGATGGTGATTTGCAGAACAAGAGAACTTCATCTATTCAACTTGGTGAGGACGGAAAGTCCGAATCAGTTGTCAGTCAAAGACCAAAATCTGTGAGCAAGTACTCAGAAATACATGCAACTCTGTTATCATTTGATACAATGCTTGGAACATTGACAAGGACCAAGGAGAGCATTGGTCGAGCAACTCGTGTTGCTATGGACTGTGGAAAGCTTGGTGTAGCTGCTAAGGTGTTGGAAATTCTTGCCCGTTATTTGGAAACTGAGTCAAGCTTACACCGGAGAGTGGACTTGTTCTTCCTGGTGGATTCAATTGCTCAATGCACCCGAGGGTTGAAGGGTGATGGTTGTGGTATGTACCCTTCTGCAATCCAAGCAATCCTGCCACGGTTATTGTCAGCTGCTGCTCCTCCTGGAAGTTCTGCACATGAAAATCGTAGACAGTGTTTAAAGGTGTTGAAACTTTGGTCGGAGAGAAGGATTGTTCCAGAGTCCATAATTCATCGCCATATGCGAGAATTAGATACTCATGGTGTGTCTTCTTCTGGTGCATATGGTAGGCGCTCTGCGAGAACGGAAAGGTCTTTGGATGATCCTCTTAGAGAAATGGAGGGCATGCTTGTTGACGAATATGGAAGCAATTCAAGTTTTCAACTTCCGGGATTTTGTATGCCCCGCATGCTCAAGGATGAAGACGATGGATGTGATTCTGATGGGGAAAGTTTTGAGGCTGTCACTCCTGAGCACAATCCTCAGGCCCATGAAGAACAAGAAACCACACCTGCCACTGAAAGACATAGGCATATCTTGGAAGATGTGGATGGAGAGCTTGAAATGGAGGATGTGGCTCCTTCCTGTGATGTTGACGTGAGTTCATCTTGTGGTGTTGCCGGAGCCAATGGTGTGCAGGCTTCACATAATCAGTTTGAACAGAATTGTCAACCGTACTTTGCCCCTCCACTACCTCGAGATGTGCCACCGTCATCTCCTCCACTACCATCTTCTCCTCCACCTCCACCTCCGCCCCCTCCACCACCACTGCCTCCACCTCATGTCGTGCATCCTCCATGCGCTATGCCCGATGCCTATATGAGCGGTGTTGATTCAAAGTCCTACACTGATGCACATAATGTGCACGGCAACAGAGTTCAACCTCCACCTCAGCAGTTGAATTCACCAAGAGTCAACCATACAATTCCCGATGCCGTGCACTATCGTGCCCCTGAATGCAGAGATCATCAGAGACAGATGCCCGATTCTACATCGTGCTCTTATGGTAGTTTTCCTACATATTTAGAAAGAAATGTGCCACACTCTGATGGTGCTACCTTCCATAATGAAGGTTACTCTTTACGACCACCTCATGCTCCACCCTCCAATCAGTTCTCTTATGTTCAAGGAGACCAACAAGGAAATCCTCAACACGAGGCTCCGCCTCCCTATCACAACAGATTTGACTATGGGGACAGAGAAAGCTATTACAATAATCATGAAAGAATGAAACCTGGCCCGTATGAGCCCCACGATAGCTGGAGATTTCCTTCACATTATTTTTCAGGTCCTCGATATCCTGATAAAGGCAAGATGTCTTATGGAACTGGTCCATATGGTGGCCCTCCATGTGAACCAACAAGAGGACCTGGCCAAGATTGGAGATATCCTCCCCGCTCGATGAGCCACAGAGACTCTATGCCCTTTAGACCACCTTTTGAAGGTCCCATACCCATCACAGGCAGAGGTCCAAGCTATTGGCGGCCAAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1430

Amino Acids

155.85

Weight (kDa)

5.48

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 25 - 108 1.3e-17 PWWP domain
CID PF04818 887 - 1010 2e-12 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1236, 3316
Acc36I ACCTGC 2 cut(s) 1236, 3316
AccB1I GGYRCC 2 cut(s) 4, 2156
AccB7I CCANNNNNTGG 2 cut(s) 1898, 4136
AccBSI CCGCTC 3 cut(s) 38, 3621, 4194
AccI GTMKAC 2 cut(s) 2480, 2965
AccII CGCG 1 cut(s) 1560
AccIII TCCGGA 1 cut(s) 1439
AclWI GGATC 4 cut(s) 426, 2135, 2336, 3113
AcoI YGGCCR 3 cut(s) 113, 4168, 4280
AcsI RAATTY 6 cut(s) 850, 1198, 2169, 2177, 2766, 3697
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 9 cut(s) 171, 666, 714, 1332, 2005, 2113, 2630, 2885, 3473
AhdI GACNNNNNGTC 1 cut(s) 2584
AhlI ACTAGT 1 cut(s) 172
AjiI CACGTC 1 cut(s) 3394
AjnI CCWGG 8 cut(s) 571, 692, 1247, 2373, 2826, 2938, 4030, 4165
AjuI GAANNNNNNNTTGG 2 cut(s) 2338, 2370
AleI CACNNNNGTG 1 cut(s) 3741
Alw21I GWGCWC 5 cut(s) 1227, 3273, 3663, 3738, 3797
Alw26I GTCTC 8 cut(s) 258, 633, 1124, 1896, 2395, 3763, 3921, 4203
Alw44I GTGCAC 2 cut(s) 3659, 3734
AlwI GGATC 4 cut(s) 426, 2135, 2336, 3113
AlwNI CAGNNNCTG 6 cut(s) 524, 593, 983, 1703, 1898, 2930
Ama87I CYCGRG 2 cut(s) 2853, 3492
Aor13HI TCCGGA 1 cut(s) 1439
ApaI GGGCCC 1 cut(s) 2228
ApaLI GTGCAC 2 cut(s) 3659, 3734
ApeKI GCWGC 7 cut(s) 50, 857, 1100, 1586, 2750, 2927, 2930
ApoI RAATTY 6 cut(s) 850, 1198, 2169, 2177, 2766, 3697
ArsI GACNNNNNNTTYG 6 cut(s) 1461, 1487, 1493, 1519, 2583, 2615
AseI ATTAAT 2 cut(s) 1740, 1881
Asp700I GAANNNNTTC 2 cut(s) 441, 3166
AspLEI GCGC 5 cut(s) 7, 284, 1562, 3090, 3599
AsuC2I CCSGG 2 cut(s) 2229, 3186
AvaI CYCGRG 2 cut(s) 2853, 3492
AvaII GGWCC 7 cut(s) 343, 2688, 4085, 4127, 4163, 4241, 4265
AxyI CCTNAGG 1 cut(s) 3279
BaeGI GKGCMC 4 cut(s) 2228, 3663, 3738, 3748
BalI TGGCCA 1 cut(s) 4170
BanI GGYRCC 2 cut(s) 4, 2156
BanII GRGCYC 2 cut(s) 2228, 4047
BarI GAAGNNNNNNTAC 8 cut(s) 131, 163, 1518, 1550, 2872, 2904, 4230, 4262
BauI CACGAG 3 cut(s) 1280, 2715, 3950
BbsI GAAGAC 5 cut(s) 169, 1544, 1731, 3057, 3225
Bbv12I GWGCWC 5 cut(s) 1227, 3273, 3663, 3738, 3797
BbvCI CCTCAGC 2 cut(s) 1473, 3687
BbvI GCAGC 7 cut(s) 37, 844, 1112, 1573, 2737, 2914, 2917
BceAI ACGGC 2 cut(s) 3679, 3716
BciT130I CCWGG 8 cut(s) 573, 694, 1249, 2375, 2828, 2940, 4032, 4167
BcnI CCSGG 2 cut(s) 2229, 3186
BcoDI GTCTC 8 cut(s) 258, 633, 1124, 1896, 2395, 3763, 3921, 4203
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 5 cut(s) 173, 1452, 1565, 1964, 2199
BfmI CTRYAG 5 cut(s) 216, 579, 1683, 1715, 1788
BfoI RGCGCY 3 cut(s) 8, 285, 3091
BfuAI ACCTGC 2 cut(s) 1236, 3316
BglI GCCNNNNNGGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 1921
BlpI GCTNAGC 1 cut(s) 1104
BmcAI AGTACT 2 cut(s) 171, 2630
Bme18I GGWCC 7 cut(s) 343, 2688, 4085, 4127, 4163, 4241, 4265
BmeRI GACNNNNNGTC 1 cut(s) 2584
BmeT110I CYCGRG 2 cut(s) 2853, 3492
BmgBI CACGTC 1 cut(s) 3394
BmrI ACTGGG 1 cut(s) 2016
BmuI ACTGGG 1 cut(s) 2016
BpiI GAAGAC 5 cut(s) 169, 1544, 1731, 3057, 3225
BplI GAGNNNNNCTC 2 cut(s) 4171, 4203
BpmI CTGGAG 2 cut(s) 1920, 4078
Bpu10I CCTNAGC 5 cut(s) 39, 1473, 2754, 3267, 3687
Bpu1102I GCTNAGC 1 cut(s) 1104
BpuEI CTTGAG 2 cut(s) 706, 3194
BpuMI CCSGG 2 cut(s) 2229, 3186
BsaAI YACGTR 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 1896, 3921
BsaJI CCNNGG 9 cut(s) 237, 1206, 1248, 2164, 2227, 2374, 2691, 2854, 2912
BsaWI WCCGGW 3 cut(s) 1439, 2400, 2805
BsaXI ACNNNNNCTCC 4 cut(s) 1017, 1047, 1893, 1923
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 6 cut(s) 608, 1349, 1708, 1776, 2011, 4129
Bse21I CCTNAGG 1 cut(s) 3279
BseAI TCCGGA 1 cut(s) 1439
BseBI CCWGG 8 cut(s) 573, 694, 1249, 2375, 2828, 2940, 4032, 4167
BseDI CCNNGG 9 cut(s) 237, 1206, 1248, 2164, 2227, 2374, 2691, 2854, 2912
BseNI ACTGG 6 cut(s) 608, 1349, 1708, 1776, 2011, 4129
BseRI GAGGAG 6 cut(s) 254, 607, 2442, 2925, 3504, 3522
BseSI GKGCMC 4 cut(s) 2228, 3663, 3738, 3748
BseXI GCAGC 7 cut(s) 37, 844, 1112, 1573, 2737, 2914, 2917
BseYI CCCAGC 2 cut(s) 8, 755
BsgI GTGCAG 4 cut(s) 318, 510, 2934, 3452
Bsh1236I CGCG 1 cut(s) 1560
BshNI GGYRCC 2 cut(s) 4, 2156
BsiHKAI GWGCWC 5 cut(s) 1227, 3273, 3663, 3738, 3797
BsiHKCI CYCGRG 2 cut(s) 2853, 3492
BsiSI CCGG 8 cut(s) 13, 116, 1440, 2229, 2401, 2806, 3185, 3417
BslFI GGGAC 6 cut(s) 1409, 1714, 1725, 2398, 4004, 4227
BsmAI GTCTC 8 cut(s) 258, 633, 1124, 1896, 2395, 3763, 3921, 4203
BsmFI GGGAC 6 cut(s) 1409, 1714, 1725, 2398, 4004, 4227
BsmI GAATGC 5 cut(s) 757, 998, 1834, 1877, 3758
Bso31I GGTCTC 2 cut(s) 1896, 3921
BsoBI CYCGRG 2 cut(s) 2853, 3492
Bsp120I GGGCCC 1 cut(s) 2224
Bsp1286I GDGCHC 8 cut(s) 1227, 2228, 3273, 3663, 3738, 3748, 3797, 4047
Bsp13I TCCGGA 1 cut(s) 1439
Bsp1720I GCTNAGC 1 cut(s) 1104
Bsp19I CCATGG 1 cut(s) 2164
BspEI TCCGGA 1 cut(s) 1439
BspFNI CGCG 1 cut(s) 1560
BspHI TCATGA 2 cut(s) 1867, 4015
BspMAI CTGCAG 2 cut(s) 220, 1719
BspMI ACCTGC 2 cut(s) 1236, 3316
BspPI GGATC 4 cut(s) 426, 2135, 2336, 3113
BspQI GCTCTTC 1 cut(s) 2126
BspT107I GGYRCC 2 cut(s) 4, 2156
BspTNI GGTCTC 2 cut(s) 1896, 3921
BsrBI CCGCTC 3 cut(s) 38, 3621, 4194
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 6 cut(s) 608, 1349, 1708, 1776, 2011, 4129
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 9 cut(s) 237, 1206, 1248, 2164, 2227, 2374, 2691, 2854, 2912
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 3 cut(s) 1280, 2715, 3950
BssT1I CCWWGG 3 cut(s) 1206, 2164, 2691
Bst2BI CACGAG 3 cut(s) 1280, 2715, 3950
Bst2UI CCWGG 8 cut(s) 573, 694, 1249, 2375, 2828, 2940, 4032, 4167
Bst6I CTCTTC 4 cut(s) 261, 609, 625, 2126
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 707
BstC8I GCNNGC 6 cut(s) 55, 117, 266, 3143, 3206, 3435
BstDSI CCRYGG 2 cut(s) 2164, 2912
BstENI CCTNNNNNAGG 2 cut(s) 4101, 4236
BstFNI CGCG 1 cut(s) 1560
BstH2I RGCGCY 3 cut(s) 8, 285, 3091
BstHHI GCGC 5 cut(s) 7, 284, 1562, 3090, 3599
BstMAI GTCTC 8 cut(s) 258, 633, 1124, 1896, 2395, 3763, 3921, 4203
BstNI CCWGG 8 cut(s) 573, 694, 1249, 2375, 2828, 2940, 4032, 4167
BstNSI RCATGY 6 cut(s) 1671, 2447, 2479, 2645, 3145, 3208
BstSFI CTRYAG 5 cut(s) 216, 579, 1683, 1715, 1788
BstSLI GKGCMC 4 cut(s) 2228, 3663, 3738, 3748
BstUI CGCG 1 cut(s) 1560
BstV1I GCAGC 7 cut(s) 37, 844, 1112, 1573, 2737, 2914, 2917
BstV2I GAAGAC 5 cut(s) 169, 1544, 1731, 3057, 3225
BstX2I RGATCY 2 cut(s) 1921, 2140
BstXI CCANNNNNNTGG 4 cut(s) 141, 1505, 1913, 4275
BstYI RGATCY 2 cut(s) 1921, 2140
Bsu36I CCTNAGG 1 cut(s) 3279
BtgI CCRYGG 2 cut(s) 2164, 2912
BtgZI GCGATG 3 cut(s) 1020, 1541, 3014
BtrI CACGTC 1 cut(s) 3394
BtsI GCAGTG 2 cut(s) 949, 3563
BtsIMutI CAGTG 8 cut(s) 393, 615, 949, 1305, 2975, 3312, 3563, 3642
BveI ACCTGC 2 cut(s) 1236, 3316
Cac8I GCNNGC 6 cut(s) 55, 117, 266, 3143, 3206, 3435
CaiI CAGNNNCTG 6 cut(s) 524, 593, 983, 1703, 1898, 2930
CciI TCATGA 2 cut(s) 1867, 4015
CfoI GCGC 5 cut(s) 7, 284, 1562, 3090, 3599
Cfr10I RCCGGY 1 cut(s) 115
CseI GACGC 2 cut(s) 257, 1538
CsiI ACCWGGT 1 cut(s) 571
Csp6I GTAC 9 cut(s) 170, 665, 713, 1331, 2004, 2112, 2629, 2884, 3472
CspCI CAANNNNNGTGG 2 cut(s) 2901, 2936
CviQI GTAC 9 cut(s) 170, 665, 713, 1331, 2004, 2112, 2629, 2884, 3472
DinI GGCGCC 1 cut(s) 6
DraI TTTAAA 3 cut(s) 1782, 2190, 2976
DriI GACNNNNNGTC 1 cut(s) 2584
EaeI YGGCCR 3 cut(s) 113, 4168, 4280
Eam1104I CTCTTC 4 cut(s) 261, 609, 625, 2126
Eam1105I GACNNNNNGTC 1 cut(s) 2584
EarI CTCTTC 4 cut(s) 261, 609, 625, 2126
EciI GGCGGA 2 cut(s) 3537, 3948
Eco130I CCWWGG 3 cut(s) 1206, 2164, 2691
Eco147I AGGCCT 1 cut(s) 557
Eco24I GRGCYC 2 cut(s) 2228, 4047
Eco31I GGTCTC 2 cut(s) 1896, 3921
Eco32I GATATC 3 cut(s) 2269, 4094, 4184
Eco47I GGWCC 7 cut(s) 343, 2688, 4085, 4127, 4163, 4241, 4265
Eco81I CCTNAGG 1 cut(s) 3279
Eco88I CYCGRG 2 cut(s) 2853, 3492
EcoNI CCTNNNNNAGG 2 cut(s) 4101, 4236
EcoO109I RGGNCCY 5 cut(s) 2224, 2225, 4085, 4163, 4241
EcoRI GAATTC 2 cut(s) 850, 3697
EcoRII CCWGG 8 cut(s) 571, 692, 1247, 2373, 2826, 2938, 4030, 4165
EcoRV GATATC 3 cut(s) 2269, 4094, 4184
EcoT14I CCWWGG 3 cut(s) 1206, 2164, 2691
EcoT22I ATGCAT 1 cut(s) 2449
EcoT38I GRGCYC 2 cut(s) 2228, 4047
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 1206, 2164, 2691
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 6 cut(s) 1409, 1714, 1725, 2398, 4004, 4227
FauI CCCGC 3 cut(s) 115, 3209, 4199
FauNDI CATATG 3 cut(s) 3036, 3079, 4132
FblI GTMKAC 2 cut(s) 2480, 2965
FriOI GRGCYC 2 cut(s) 2228, 4047
FspBI CTAG 5 cut(s) 173, 1452, 1565, 1964, 2199
GlaI GCGC 5 cut(s) 6, 283, 1561, 3089, 3598
GsaI CCCAGC 2 cut(s) 12, 759
GsuI CTGGAG 2 cut(s) 1920, 4078
HaeII RGCGCY 3 cut(s) 8, 285, 3091
HapII CCGG 8 cut(s) 13, 116, 1440, 2229, 2401, 2806, 3185, 3417
HgaI GACGC 2 cut(s) 257, 1538
HhaI GCGC 5 cut(s) 7, 284, 1562, 3090, 3599
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 5 cut(s) 5, 282, 1560, 3088, 3597
HinP1I GCGC 5 cut(s) 5, 282, 1560, 3088, 3597
HincII GTYRAC 5 cut(s) 2481, 3151, 3391, 3467, 3712
HindII GTYRAC 5 cut(s) 2481, 3151, 3391, 3467, 3712
HindIII AAGCTT 2 cut(s) 2738, 2797
HpaII CCGG 8 cut(s) 13, 116, 1440, 2229, 2401, 2806, 3185, 3417
HpyCH4IV ACGT 5 cut(s) 222, 706, 2259, 2462, 3393
HpySE526I ACGT 5 cut(s) 222, 706, 2259, 2462, 3393
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 5 cut(s) 5, 282, 1560, 3088, 3597
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 1439
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
LguI GCTCTTC 1 cut(s) 2126
LmnI GCTCC 6 cut(s) 436, 2938, 3379, 3419, 3898, 3961
Lsp1109I GCAGC 7 cut(s) 37, 844, 1112, 1573, 2737, 2914, 2917
MabI ACCWGGT 1 cut(s) 571
MaeI CTAG 5 cut(s) 173, 1452, 1565, 1964, 2199
MaeII ACGT 5 cut(s) 222, 706, 2259, 2462, 3393
MaeIII GTNAC 9 cut(s) 589, 610, 1316, 1370, 1621, 1887, 1946, 3259, 3869
MbiI CCGCTC 3 cut(s) 38, 3621, 4194
MfeI CAATTG 3 cut(s) 477, 2025, 2838
MflI RGATCY 2 cut(s) 1921, 2140
MhlI GDGCHC 8 cut(s) 1227, 2228, 3273, 3663, 3738, 3748, 3797, 4047
MlsI TGGCCA 1 cut(s) 4170
MluNI TGGCCA 1 cut(s) 4170
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 6 cut(s) 1721, 1858, 2801, 3026, 3717, 4205
MmeI TCCRAC 3 cut(s) 426, 2742, 2976
Mox20I TGGCCA 1 cut(s) 4170
Mph1103I ATGCAT 1 cut(s) 2449
MroI TCCGGA 1 cut(s) 1439
MroNI GCCGGC 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 441, 3166
MscI TGGCCA 1 cut(s) 4170
MseI TTAA 7 cut(s) 560, 1740, 1781, 1881, 2013, 2189, 2975
MslI CAYNNNNRTG 4 cut(s) 1911, 2214, 3741, 3843
Msp20I TGGCCA 1 cut(s) 4170
MspA1I CMGCKG 4 cut(s) 50, 857, 1103, 2927
MspI CCGG 8 cut(s) 13, 116, 1440, 2229, 2401, 2806, 3185, 3417
MssI GTTTAAAC 1 cut(s) 1782
MunI CAATTG 3 cut(s) 477, 2025, 2838
Mva1269I GAATGC 5 cut(s) 757, 998, 1834, 1877, 3758
MvaI CCWGG 8 cut(s) 573, 694, 1249, 2375, 2828, 2940, 4032, 4167
MvnI CGCG 1 cut(s) 1560
NaeI GCCGGC 1 cut(s) 117
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 2229, 3186
NcoI CCATGG 1 cut(s) 2164
NdeI CATATG 3 cut(s) 3036, 3079, 4132
NgoMIV GCCGGC 1 cut(s) 115
NmuCI GTSAC 6 cut(s) 610, 1316, 1370, 1621, 1946, 3259
NsiI ATGCAT 1 cut(s) 2449
NspI RCATGY 6 cut(s) 1671, 2447, 2479, 2645, 3145, 3208
OliI CACNNNNGTG 1 cut(s) 3741
PaeI GCATGC 2 cut(s) 3145, 3208
PaeR7I CTCGAG 1 cut(s) 3492
PagI TCATGA 2 cut(s) 1867, 4015
PaqCI CACCTGC 2 cut(s) 1236, 3316
PceI AGGCCT 1 cut(s) 557
PciSI GCTCTTC 1 cut(s) 2126
PcsI WCGNNNNNNNCGW 3 cut(s) 2586, 2713, 3037
PctI GAATGC 5 cut(s) 757, 998, 1834, 1877, 3758
PdiI GCCGGC 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 441, 3166
PflMI CCANNNNNTGG 2 cut(s) 1898, 4136
PfoI TCCNGGA 3 cut(s) 692, 2938, 3184
PleI GAGTC 6 cut(s) 1721, 1857, 2800, 3025, 3716, 4205
PluTI GGCGCC 1 cut(s) 8
PmeI GTTTAAAC 1 cut(s) 1782
PpsI GAGTC 6 cut(s) 1721, 1857, 2800, 3025, 3716, 4205
Ppu21I YACGTR 1 cut(s) 707
PpuMI RGGWCCY 3 cut(s) 4085, 4163, 4241
PshBI ATTAAT 2 cut(s) 1740, 1881
Psp5II RGGWCCY 3 cut(s) 4085, 4163, 4241
Psp6I CCWGG 8 cut(s) 571, 692, 1247, 2373, 2826, 2938, 4030, 4165
PspFI CCCAGC 2 cut(s) 8, 755
PspGI CCWGG 8 cut(s) 571, 692, 1247, 2373, 2826, 2938, 4030, 4165
PspOMI GGGCCC 1 cut(s) 2224
PspPPI RGGWCCY 3 cut(s) 4085, 4163, 4241
PstI CTGCAG 2 cut(s) 220, 1719
PstNI CAGNNNCTG 6 cut(s) 524, 593, 983, 1703, 1898, 2930
PsuI RGATCY 2 cut(s) 1921, 2140
PvuII CAGCTG 3 cut(s) 857, 1103, 2927
RsaI GTAC 9 cut(s) 171, 666, 714, 1332, 2005, 2113, 2630, 2885, 3473
RsaNI GTAC 9 cut(s) 170, 665, 713, 1331, 2004, 2112, 2629, 2884, 3472
RseI CAYNNNNRTG 4 cut(s) 1911, 2214, 3741, 3843
SalI GTCGAC 1 cut(s) 2479
SapI GCTCTTC 1 cut(s) 2126
SaqAI TTAA 7 cut(s) 560, 1740, 1781, 1881, 2013, 2189, 2975
ScaI AGTACT 2 cut(s) 171, 2630
SchI GAGTC 6 cut(s) 1721, 1858, 2801, 3026, 3717, 4205
SduI GDGCHC 8 cut(s) 1227, 2228, 3273, 3663, 3738, 3748, 3797, 4047
SexAI ACCWGGT 1 cut(s) 571
SfcI CTRYAG 5 cut(s) 216, 579, 1683, 1715, 1788
SfiI GGCCNNNNNGGCC 1 cut(s) 41
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 3492
SinI GGWCC 7 cut(s) 343, 2688, 4085, 4127, 4163, 4241, 4265
SlaI CTCGAG 1 cut(s) 3492
SmiMI CAYNNNNRTG 4 cut(s) 1911, 2214, 3741, 3843
SmlI CTYRAG 3 cut(s) 721, 3209, 3492
SmoI CTYRAG 3 cut(s) 721, 3209, 3492
SpeI ACTAGT 1 cut(s) 172
SphI GCATGC 2 cut(s) 3145, 3208
SseBI AGGCCT 1 cut(s) 557
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 2 cut(s) 1429, 2500
SspMI CTAG 5 cut(s) 173, 1452, 1565, 1964, 2199
StuI AGGCCT 1 cut(s) 557
StyI CCWWGG 3 cut(s) 1206, 2164, 2691
TaiI ACGT 5 cut(s) 225, 709, 2262, 2465, 3396
TaqI TCGA 7 cut(s) 507, 680, 2480, 2707, 3493, 4090, 4196
TatI WGTACW 3 cut(s) 169, 1330, 2628
TauI GCSGC 5 cut(s) 38, 47, 50, 60, 4282
Tru1I TTAA 7 cut(s) 560, 1740, 1781, 1881, 2013, 2189, 2975
Tru9I TTAA 7 cut(s) 560, 1740, 1781, 1881, 2013, 2189, 2975
TscAI CASTG 8 cut(s) 393, 615, 949, 1312, 2975, 3319, 3570, 3649
TseFI GTSAC 6 cut(s) 610, 1316, 1370, 1621, 1946, 3259
TseI GCWGC 7 cut(s) 50, 857, 1100, 1586, 2750, 2927, 2930
Tsp45I GTSAC 6 cut(s) 610, 1316, 1370, 1621, 1946, 3259
TspGWI ACGGA 4 cut(s) 829, 2400, 2595, 3116
TspRI CASTG 8 cut(s) 393, 615, 949, 1312, 2975, 3319, 3570, 3649
Van91I CCANNNNNTGG 2 cut(s) 1898, 4136
VneI GTGCAC 2 cut(s) 3659, 3734
VpaK11BI GGWCC 7 cut(s) 343, 2688, 4085, 4127, 4163, 4241, 4265
VspI ATTAAT 2 cut(s) 1740, 1881
XagI CCTNNNNNAGG 2 cut(s) 4101, 4236
XapI RAATTY 6 cut(s) 850, 1198, 2169, 2177, 2766, 3697
XbaI TCTAGA 1 cut(s) 1564
XceI RCATGY 6 cut(s) 1671, 2447, 2479, 2645, 3145, 3208
XcmI CCANNNNNNNNNTGG 1 cut(s) 1255
XhoI CTCGAG 1 cut(s) 3492
XmiI GTMKAC 2 cut(s) 2480, 2965
XmnI GAANNNNTTC 2 cut(s) 441, 3166
XspI CTAG 5 cut(s) 173, 1452, 1565, 1964, 2199
ZrmI AGTACT 2 cut(s) 171, 2630
Zsp2I ATGCAT 1 cut(s) 2449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.