Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Forward (+)

52938988 .. 52939844

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGTGCGAGGCAGCGAGTGAGGGCGAGTCAGGGCTCCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTGCTTTATCTCGTCTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACCGCCTCCGTCAACCGGAAGCTGCGCGCCGTCGTCAACCGCCTGCTCTGGCGGGAGGTCTGCCTCTACCGCGCGCCGCGGATGACAGCGACCTTGACGAACGGCGCCCTCAACGGGCGGATCGGCGGCGGTCAACCCTCCCCGGGTCACCGGGTCAAGGCGTCGCGGTTCTCGAAGACCTCCGGCCAGAGCTTCCTGTCGAAGAACTGCCGGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGATAAGGAGGAGGATCACCTGGGGATCTACCGAGGGGTGTTTCGGGGATTTCACAGGTCGAGGACGATGGCCTGCTTGATCGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCATATGCCCTTACTGTGGGGCCCGCGTGTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGGCGGCTCGGCTCGCACGACGGGGCGTTGGAGTATTTCGTGTGCGTGAACGGGCACTTGTACGGCAGTTGCTGGCTGGTGCCGTTGTCGGAGGATGAGGATGAGGATGGGGATGAGGAGGAGGTGGAATATTATTCGGACGGTCGCCGTAGAATTACCTACGACGATCGGACGGCGACGAATGGAAGCCTTGGATCGATGGGAGAGGAGGTTGTGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

262

Amino Acids

29.41

Weight (kDa)

7.07

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	230, 643
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	469
AclWI	GGATC	4 cut(s)	254, 405, 416, 766
AcoI	YGGCCR	1 cut(s)	310
AcyI	GRCGYC	2 cut(s)	231, 287
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 269, 283, 382, 509, 522, 540
AflIII	ACRYGT	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	148, 318, 481
AluI	AGCT	3 cut(s)	148, 318, 481
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	4 cut(s)	254, 405, 416, 766
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	2 cut(s)	43, 268
AoxI	GGCC	3 cut(s)	310, 453, 513
ApaI	GGGCCC	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	13, 148
AspLEI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 560, 565
AspS9I	GGNCC	3 cut(s)	343, 513, 514
AsuC2I	CCSGG	5 cut(s)	269, 270, 278, 338, 382
AsuHPI	GGTGA	3 cut(s)	266, 392, 487
AvaI	CYCGRG	2 cut(s)	43, 268
AvaII	GGWCC	1 cut(s)	343
BaeGI	GKGCMC	2 cut(s)	517, 621
BanI	GGYRCC	2 cut(s)	230, 643
BanII	GRGCYC	2 cut(s)	38, 517
BbsI	GAAGAC	2 cut(s)	79, 308
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	25, 135
BccI	CCATC	3 cut(s)	445, 665, 757
BceAI	ACGGC	6 cut(s)	140, 244, 631, 643, 696, 753
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	5 cut(s)	269, 270, 278, 338, 382
BfaI	CTAG	1 cut(s)	787
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	9 cut(s)	14, 149, 203, 253, 470, 537, 561, 566, 569
BlsI	GCNGC	9 cut(s)	15, 150, 204, 254, 471, 538, 562, 567, 570
Bme1390I	CCNGG	6 cut(s)	269, 270, 278, 338, 382, 404
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	2 cut(s)	43, 268
BmgT120I	GGNCC	3 cut(s)	343, 513, 514
BmiI	GGNNCC	6 cut(s)	37, 232, 344, 514, 515, 645
BmrFI	CCNGG	6 cut(s)	269, 270, 278, 338, 382, 404
BpiI	GAAGAC	2 cut(s)	79, 308
BpmI	CTGGAG	1 cut(s)	503
BpuMI	CCSGG	5 cut(s)	269, 270, 278, 338, 382
Bsa29I	ATCGAT	1 cut(s)	761
BsaHI	GRCGYC	2 cut(s)	231, 287
BsaJI	CCNNGG	9 cut(s)	203, 267, 268, 337, 381, 403, 415, 534, 754
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 269, 283, 382, 509, 522, 540
BseBI	CCWGG	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	9 cut(s)	203, 267, 268, 337, 381, 403, 415, 534, 754
BseGI	GGATG	6 cut(s)	108, 213, 664, 670, 676, 682
BseLI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 269, 283, 382, 509, 522, 540
BsePI	GCGCGC	2 cut(s)	151, 198
BseRI	GAGGAG	5 cut(s)	407, 500, 695, 698, 785
BseSI	GKGCMC	2 cut(s)	517, 621
BseXI	GCAGC	2 cut(s)	25, 135
Bsh1285I	CGRYCG	2 cut(s)	709, 733
BshFI	GGCC	3 cut(s)	312, 455, 515
BshNI	GGYRCC	2 cut(s)	230, 643
BshVI	ATCGAT	1 cut(s)	761
BsiEI	CGRYCG	2 cut(s)	709, 733
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	43, 268
BsiSI	CCGG	6 cut(s)	142, 269, 277, 309, 337, 381
BslFI	GGGAC	3 cut(s)	119, 356, 533
BslI	CCNNNNNNNGG	9 cut(s)	102, 141, 240, 269, 283, 382, 509, 522, 540
BsmFI	GGGAC	3 cut(s)	119, 356, 533
BsnI	GGCC	3 cut(s)	312, 455, 515
BsoBI	CYCGRG	2 cut(s)	43, 268
Bsp120I	GGGCCC	1 cut(s)	513
Bsp1286I	GDGCHC	4 cut(s)	38, 375, 517, 621
Bsp143I	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
BspANI	GGCC	3 cut(s)	312, 455, 515
BspDI	ATCGAT	1 cut(s)	761
BspLI	GGNNCC	6 cut(s)	37, 232, 344, 514, 515, 645
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	4 cut(s)	254, 405, 416, 766
BspT107I	GGYRCC	2 cut(s)	230, 643
BsrBI	CCGCTC	1 cut(s)	469
BssECI	CCNNGG	9 cut(s)	203, 267, 268, 337, 381, 403, 415, 534, 754
BssHII	GCGCGC	2 cut(s)	151, 198
BssMI	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
BssNI	GRCGYC	2 cut(s)	231, 287
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	509, 707
BstACI	GRCGYC	2 cut(s)	231, 287
BstC8I	GCNNGC	9 cut(s)	74, 153, 170, 200, 371, 457, 517, 578, 638
BstDSI	CCRYGG	2 cut(s)	203, 534
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	6 cut(s)	108, 213, 664, 670, 676, 682
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 560, 565
BstKTI	GATC	6 cut(s)	249, 400, 411, 465, 733, 761
BstMBI	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
BstMCI	CGRYCG	2 cut(s)	709, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	195, 366, 478, 498, 525, 577
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	367
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	6 cut(s)	267, 268, 276, 336, 380, 402
BstSLI	GKGCMC	2 cut(s)	517, 621
BstV1I	GCAGC	2 cut(s)	25, 135
BstV2I	GAAGAC	2 cut(s)	79, 308
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
Bsu15I	ATCGAT	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	312, 455, 515
BsuTUI	ATCGAT	1 cut(s)	761
BtgI	CCRYGG	2 cut(s)	203, 534
BtsCI	GGATG	6 cut(s)	108, 213, 664, 670, 676, 682
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	9 cut(s)	74, 153, 170, 200, 371, 457, 517, 578, 638
CaiI	CAGNNNCTG	1 cut(s)	636
CfoI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 560, 565
Cfr13I	GGNCC	3 cut(s)	343, 513, 514
Cfr42I	CCGCGG	2 cut(s)	206, 537
Cfr9I	CCCGGG	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	761
CseI	GACGC	2 cut(s)	276, 481
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	3 cut(s)	97, 364, 529
CviQI	GTAC	1 cut(s)	625
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	6 cut(s)	248, 399, 410, 464, 732, 760
DpnII	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	754
Eco24I	GRGCYC	2 cut(s)	38, 517
Eco47I	GGWCC	1 cut(s)	343
Eco88I	CYCGRG	2 cut(s)	43, 268
Eco91I	GGTNACC	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	343, 513
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	754
EcoT38I	GRGCYC	2 cut(s)	38, 517
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	3 cut(s)	100, 367, 532
FaiI	YATR	5 cut(s)	98, 365, 497, 499, 530
FaqI	GGGAC	3 cut(s)	119, 356, 533
FatI	CATG	3 cut(s)	96, 363, 528
FauI	CCCGC	3 cut(s)	171, 465, 524
FauNDI	CATATG	1 cut(s)	497
Fnu4HI	GCNGC	9 cut(s)	14, 149, 203, 253, 470, 537, 561, 566, 569
FokI	GGATG	6 cut(s)	95, 220, 671, 677, 683, 689
FriOI	GRGCYC	2 cut(s)	38, 517
Fsp4HI	GCNGC	9 cut(s)	14, 149, 203, 253, 470, 537, 561, 566, 569
FspBI	CTAG	1 cut(s)	787
GlaI	GCGC	9 cut(s)	71, 117, 152, 154, 199, 201, 232, 559, 564
GluI	GCNGC	9 cut(s)	14, 149, 203, 253, 470, 537, 561, 566, 569
GsuI	CTGGAG	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	312, 455, 515
HapII	CCGG	6 cut(s)	142, 269, 277, 309, 337, 381
HgaI	GACGC	2 cut(s)	276, 481
HhaI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 560, 565
Hin1I	GRCGYC	2 cut(s)	231, 287
Hin1II	CATG	3 cut(s)	100, 367, 532
Hin6I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 558, 563
HinP1I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 558, 563
HincII	GTYRAC	3 cut(s)	139, 163, 260
HindII	GTYRAC	3 cut(s)	139, 163, 260
HinfI	GANTC	4 cut(s)	28, 41, 58, 92
HpaII	CCGG	6 cut(s)	142, 269, 277, 309, 337, 381
HphI	GGTGA	3 cut(s)	266, 392, 487
Hpy166II	GTNNAC	4 cut(s)	139, 163, 260, 613
Hpy188I	TCNGA	4 cut(s)	40, 655, 703, 735
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	4 cut(s)	139, 163, 260, 613
Hpy99I	CGWCG	5 cut(s)	161, 292, 587, 731, 745
HpyCH4III	ACNGT	2 cut(s)	509, 707
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	6 cut(s)	195, 366, 478, 498, 525, 577
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	2 cut(s)	231, 287
Hsp92II	CATG	3 cut(s)	100, 367, 532
HspAI	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 558, 563
KasI	GGCGCC	1 cut(s)	230
KspI	CCGCGG	2 cut(s)	206, 537
Kzo9I	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
LmnI	GCTCC	3 cut(s)	41, 128, 525
Lsp1109I	GCAGC	2 cut(s)	25, 135
MaeI	CTAG	1 cut(s)	787
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	6 cut(s)	248, 399, 410, 464, 732, 760
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
MboII	GAAGA	3 cut(s)	79, 313, 340
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	4 cut(s)	38, 375, 517, 621
MluCI	AATT	1 cut(s)	717
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	35, 37, 101
MmeI	TCCRAC	3 cut(s)	63, 573, 633
MspA1I	CMGCKG	2 cut(s)	205, 536
MspI	CCGG	6 cut(s)	142, 269, 277, 309, 337, 381
MspR9I	CCNGG	6 cut(s)	269, 270, 278, 338, 382, 404
MteI	GCGCNGCGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	195, 366, 478, 498, 525, 577
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	5 cut(s)	269, 270, 278, 338, 382
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
NlaIII	CATG	3 cut(s)	100, 367, 532
NlaIV	GGNNCC	6 cut(s)	37, 232, 344, 514, 515, 645
NmeAIII	GCCGAG	2 cut(s)	520, 552
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	367
PauI	GCGCGC	2 cut(s)	151, 198
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	296, 579
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	9 cut(s)	15, 150, 204, 254, 471, 538, 562, 567, 570
Ple19I	CGATCG	1 cut(s)	733
PleI	GAGTC	3 cut(s)	35, 36, 100
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	3 cut(s)	35, 36, 100
PpuMI	RGGWCCY	1 cut(s)	343
PscI	ACATGT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	402
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	6 cut(s)	37, 232, 344, 514, 515, 645
PspOMI	GGGCCC	1 cut(s)	513
PspPI	GGNCC	3 cut(s)	343, 513, 514
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	408
PteI	GCGCGC	2 cut(s)	151, 198
PvuI	CGATCG	1 cut(s)	733
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
SacII	CCGCGG	2 cut(s)	206, 537
SatI	GCNGC	9 cut(s)	14, 149, 203, 253, 470, 537, 561, 566, 569
Sau3AI	GATC	6 cut(s)	246, 397, 408, 462, 730, 758
Sau96I	GGNCC	3 cut(s)	343, 513, 514
SchI	GAGTC	3 cut(s)	35, 37, 101
ScrFI	CCNGG	6 cut(s)	269, 270, 278, 338, 382, 404
SduI	GDGCHC	4 cut(s)	38, 375, 517, 621
SfoI	GGCGCC	1 cut(s)	232
Sfr303I	CCGCGG	2 cut(s)	206, 537
SgrBI	CCGCGG	2 cut(s)	206, 537
SinI	GGWCC	1 cut(s)	343
SmaI	CCCGGG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	717
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	1 cut(s)	787
StyD4I	CCNGG	6 cut(s)	267, 268, 276, 336, 380, 402
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	509, 707
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	6 cut(s)	90, 299, 326, 443, 465, 761
TasI	AATT	1 cut(s)	717
TauI	GCSGC	7 cut(s)	205, 255, 472, 539, 563, 568, 571
TfiI	GAWTC	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	13, 148
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	343
XceI	RCATGY	1 cut(s)	367
XmaI	CCCGGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.