pycom03g21440

EID1-like F-box protein 3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
21747291 .. 21748269
979 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21440.1

Sequence Viewer

Length: 933 bp
ATGTATTCACGGCTCGAAATTCAGTCCGGAATTTTCGCGATGAATGCGAACCGGCGACTGAGACCGAACCCGCCGAGCGAGCGGTCCGACTCGGACGACAACGGGATCCTGAATGAGCGGATACTCTTTCTCGTCTTCCAGTCCATGGACTGGGACATCCAAGCGCTCTCCTCGACCGCGTCGGTGAATCACAAGCTCCGGGCGATCGTGAAGCGGCTGCTGTGGCGGGAGCTCTGCAAGTACCGCGCCCCGCGCATGGTGGCGGCGCTGGAGAACTGTGCGCCCAACGGCCGGATCGGCGGCGGATGGCACACGCTCGCGAAGCTCATGTTCTTCTGCGGCGGATGCGAGCCGACTCGGAATTTCAAGGTGAGTCAACCTACCCCGGGTCACCTCGTCAAATCGTCACGATTCTCAAAGACGTCGGGGCAGAGCTTCCTCACGAAGAAGTGCCGCGGCGATTTGCTGTACGTCAGCGACCCCTGCGAGCATCCGATGGGGGAGAAGGAGGACGATCTGGGGATTTACAGAGGGGTATTTAAGGGATTTGACAAGTCGCGGACGAGGGCGTATTTGATCGGACGGCGGGTGAAGCTCGAGGAGCGGGTAAGGTGTCCTTATTGTGGGGCCCCCGTGTGGAGCATGACTACGGCGGGGCTCGTTCCGAAGAGCGCGGCGCGGCGGCTCGGCTCGCACCACGGCGCGTTGGAGTATTTTGTTTGTGTGAGCGGGCACATGCACGGCATGTGCTGGCTCGTGCCGCTGTCGGACGATGAGAATGGATTGACCGAGATGGACGGCTGTGATGATTCGGATTTCGGTGATGATGATTACGGTGGGGTCCGCAGAATCAGCTACGACGATCGGACGGCTACGAATGGAAGCATTGGGTCGATGGGGGAGGAAGTTGTGGTGGACGGGCCCGCAAAGTGA

Protein Analysis

311

Amino Acids

34.54

Weight (kDa)

8.45

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63060
fragaria_vesca FvH4_2g23930
malus_domestica MD03G1268700.v1.1
prunus_persica Prupe.8G244600_v2.0.a1
pyrus_communis pycom03g21440
rosa_chinensis RchiOBHm_Chr6g0291561
rosa_laevigata RLG00000012107
rosa_multiflora Rmu_sc0002226.1_g000003
rosa_roxburghii Rroxscaffold_7G00175970
rosa_rugosa Rorug06G0220200
rosa_samantha Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana Rw6G028880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 2 cut(s) 145, 150
AccBSI CCGCTC 4 cut(s) 82, 118, 604, 729
AccIII TCCGGA 1 cut(s) 26
AclWI GGATC 3 cut(s) 100, 113, 302
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 3 cut(s) 18, 30, 361
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 2 cut(s) 242, 470
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 7 cut(s) 145, 150, 256, 291, 386, 623, 636
AgsI TTSAA 1 cut(s) 367
AluBI AGCT 6 cut(s) 196, 232, 325, 435, 595, 855
AluI AGCT 6 cut(s) 196, 232, 325, 435, 595, 855
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 3 cut(s) 100, 113, 302
Ama87I CYCGRG 2 cut(s) 385, 596
Aor13HI TCCGGA 1 cut(s) 26
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 3 cut(s) 289, 627, 920
ApaI GGGCCC 2 cut(s) 631, 924
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 3 cut(s) 18, 30, 361
AspLEI GCGC 8 cut(s) 166, 248, 255, 268, 283, 674, 679, 704
AspS9I GGNCC 6 cut(s) 84, 627, 628, 841, 920, 921
AsuC2I CCSGG 3 cut(s) 200, 386, 387
AsuHPI GGTGA 5 cut(s) 196, 382, 383, 601, 833
AvaI CYCGRG 2 cut(s) 385, 596
AvaII GGWCC 2 cut(s) 84, 841
BaeGI GKGCMC 3 cut(s) 631, 735, 924
BamHI GGATCC 1 cut(s) 105
BanII GRGCYC 4 cut(s) 234, 631, 660, 924
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 204
BccI CCATC 4 cut(s) 300, 490, 787, 889
BceAI ACGGC 8 cut(s) 26, 304, 599, 666, 715, 757, 814, 885
BciVI GTATCC 1 cut(s) 114
BcnI CCSGG 3 cut(s) 200, 386, 387
BcoDI GTCTC 1 cut(s) 55
BfoI RGCGCY 2 cut(s) 167, 269
BfuI GTATCC 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 297
Bme1390I CCNGG 3 cut(s) 200, 386, 387
Bme18I GGWCC 2 cut(s) 84, 841
BmeT110I CYCGRG 2 cut(s) 385, 596
BmgT120I GGNCC 6 cut(s) 84, 627, 628, 841, 920, 921
BmiI GGNNCC 6 cut(s) 107, 628, 629, 630, 842, 922
BmrFI CCNGG 3 cut(s) 200, 386, 387
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 335, 499
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 3 cut(s) 200, 386, 387
BsaHI GRCGYC 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 5 cut(s) 144, 384, 385, 454, 697
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 150, 256, 291, 386, 623, 636
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 139, 155
BseAI TCCGGA 1 cut(s) 26
BseDI CCNNGG 5 cut(s) 144, 384, 385, 454, 697
BseGI GGATG 4 cut(s) 156, 311, 350, 490
BseLI CCNNNNNNNGG 7 cut(s) 145, 150, 256, 291, 386, 623, 636
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 139, 155
BseRI GAGGAG 2 cut(s) 160, 614
BseSI GKGCMC 3 cut(s) 631, 735, 924
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 204
Bsh1285I CGRYCG 4 cut(s) 177, 207, 292, 865
BshFI GGCC 3 cut(s) 291, 629, 922
BsiEI CGRYCG 4 cut(s) 177, 207, 292, 865
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 2 cut(s) 385, 596
BsiSI CCGG 5 cut(s) 27, 52, 199, 292, 386
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 7 cut(s) 145, 150, 256, 291, 386, 623, 636
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 3 cut(s) 291, 629, 922
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 2 cut(s) 385, 596
Bsp120I GGGCCC 2 cut(s) 627, 920
Bsp1286I GDGCHC 5 cut(s) 234, 631, 660, 735, 924
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 6 cut(s) 105, 204, 294, 514, 576, 862
Bsp19I CCATGG 1 cut(s) 144
Bsp68I TCGCGA 2 cut(s) 38, 320
BspANI GGCC 3 cut(s) 291, 629, 922
BspCNI CTCAG 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 26
BspLI GGNNCC 6 cut(s) 107, 628, 629, 630, 842, 922
BspPI GGATC 3 cut(s) 100, 113, 302
BspQI GCTCTTC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 4 cut(s) 82, 118, 604, 729
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 2 cut(s) 139, 155
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 144, 384, 385, 454, 697
BssMI GATC 6 cut(s) 105, 204, 294, 514, 576, 862
BssNI GRCGYC 1 cut(s) 422
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 755
Bst4CI ACNGT 2 cut(s) 278, 836
Bst6I CTCTTC 1 cut(s) 662
BstACI GRCGYC 1 cut(s) 422
BstC8I GCNNGC 8 cut(s) 80, 318, 350, 488, 692, 731, 752, 924
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 3 cut(s) 144, 454, 697
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 4 cut(s) 156, 311, 350, 490
BstH2I RGCGCY 2 cut(s) 167, 269
BstHHI GCGC 8 cut(s) 166, 248, 255, 268, 283, 674, 679, 704
BstKTI GATC 6 cut(s) 108, 207, 297, 517, 579, 865
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 6 cut(s) 105, 204, 294, 514, 576, 862
BstMCI CGRYCG 4 cut(s) 177, 207, 292, 865
BstNSI RCATGY 2 cut(s) 739, 748
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 198, 384, 385
BstSLI GKGCMC 3 cut(s) 631, 735, 924
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BstZI CGGCCG 1 cut(s) 289
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 3 cut(s) 291, 629, 922
BtgI CCRYGG 3 cut(s) 144, 454, 697
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 4 cut(s) 156, 311, 350, 490
BtuMI TCGCGA 2 cut(s) 38, 320
Cac8I GCNNGC 8 cut(s) 80, 318, 350, 488, 692, 731, 752, 924
CfoI GCGC 8 cut(s) 166, 248, 255, 268, 283, 674, 679, 704
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 6 cut(s) 84, 627, 628, 841, 920, 921
Cfr42I CCGCGG 1 cut(s) 457
Cfr9I CCCGGG 1 cut(s) 385
CpoI CGGWCCG 1 cut(s) 84
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 241, 469
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 6 cut(s) 145, 256, 328, 643, 736, 745
CviQI GTAC 2 cut(s) 241, 469
DdeI CTNAG 1 cut(s) 59
DpnI GATC 6 cut(s) 107, 206, 296, 516, 578, 864
DpnII GATC 6 cut(s) 105, 204, 294, 514, 576, 862
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 662
EarI CTCTTC 1 cut(s) 662
EciI GGCGGA 2 cut(s) 318, 357
Ecl136II GAGCTC 1 cut(s) 232
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 4 cut(s) 234, 631, 660, 924
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 84, 841
Eco47III AGCGCT 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 232
Eco88I CYCGRG 2 cut(s) 385, 596
Eco91I GGTNACC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 2 cut(s) 627, 628
EcoO65I GGTNACC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 4 cut(s) 234, 631, 660, 924
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 6 cut(s) 148, 259, 331, 646, 739, 748
FaiI YATR 6 cut(s) 146, 257, 329, 644, 737, 746
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 1 cut(s) 167
FatI CATG 6 cut(s) 144, 255, 327, 642, 735, 744
FauI CCCGC 8 cut(s) 78, 219, 258, 579, 597, 646, 722, 931
FokI GGATG 4 cut(s) 143, 318, 357, 477
FriOI GRGCYC 4 cut(s) 234, 631, 660, 924
GlaI GCGC 8 cut(s) 165, 247, 254, 267, 282, 673, 678, 703
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 2 cut(s) 167, 269
HaeIII GGCC 3 cut(s) 291, 629, 922
HapII CCGG 5 cut(s) 27, 52, 199, 292, 386
HgaI GACGC 1 cut(s) 168
HhaI GCGC 8 cut(s) 166, 248, 255, 268, 283, 674, 679, 704
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 6 cut(s) 148, 259, 331, 646, 739, 748
Hin6I GCGC 8 cut(s) 164, 246, 253, 266, 281, 672, 677, 702
HinP1I GCGC 8 cut(s) 164, 246, 253, 266, 281, 672, 677, 702
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 7 cut(s) 89, 187, 355, 373, 411, 809, 849
HpaII CCGG 5 cut(s) 27, 52, 199, 292, 386
HphI GGTGA 5 cut(s) 196, 382, 383, 601, 833
Hpy166II GTNNAC 2 cut(s) 377, 916
Hpy188I TCNGA 9 cut(s) 88, 94, 360, 495, 581, 666, 769, 814, 867
Hpy188III TCNNGA 7 cut(s) 27, 37, 109, 208, 319, 408, 442
Hpy8I GTNNAC 2 cut(s) 377, 916
Hpy99I CGWCG 3 cut(s) 184, 427, 863
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 2 cut(s) 278, 836
HpyCH4IV ACGT 2 cut(s) 422, 471
HpyCH4V TGCA 2 cut(s) 237, 739
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 422, 471
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 6 cut(s) 148, 259, 331, 646, 739, 748
HspAI GCGC 8 cut(s) 164, 246, 253, 266, 281, 672, 677, 702
Kpn2I TCCGGA 1 cut(s) 26
KspI CCGCGG 1 cut(s) 457
Kzo9I GATC 6 cut(s) 105, 204, 294, 514, 576, 862
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 4 cut(s) 201, 229, 601, 639
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 335, 499
MaeII ACGT 2 cut(s) 422, 471
MaeIII GTNAC 2 cut(s) 389, 405
MalI GATC 6 cut(s) 107, 206, 296, 516, 578, 864
MbiI CCGCTC 4 cut(s) 82, 118, 604, 729
MboI GATC 6 cut(s) 105, 204, 294, 514, 576, 862
MboII GAAGA 4 cut(s) 127, 325, 457, 679
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 5 cut(s) 234, 631, 660, 735, 924
MluCI AATT 3 cut(s) 18, 30, 361
MlyI GAGTC 3 cut(s) 83, 349, 382
MmeI TCCRAC 3 cut(s) 111, 687, 747
MnlI CCTC 8 cut(s) 181, 404, 449, 502, 524, 558, 592, 895
MroI TCCGGA 1 cut(s) 26
MseI TTAA 1 cut(s) 540
MspA1I CMGCKG 2 cut(s) 456, 763
MspI CCGG 5 cut(s) 27, 52, 199, 292, 386
MspR9I CCNGG 3 cut(s) 200, 386, 387
MteI GCGCNGCGC 1 cut(s) 675
Mva1269I GAATGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 200, 386, 387
NcoI CCATGG 1 cut(s) 144
NdeII GATC 6 cut(s) 105, 204, 294, 514, 576, 862
NlaIII CATG 6 cut(s) 148, 259, 331, 646, 739, 748
NlaIV GGNNCC 6 cut(s) 107, 628, 629, 630, 842, 922
NmeAIII GCCGAG 2 cut(s) 99, 666
NmuCI GTSAC 2 cut(s) 389, 405
NruI TCGCGA 2 cut(s) 38, 320
NspI RCATGY 2 cut(s) 739, 748
PaeR7I CTCGAG 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 662
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 4 cut(s) 187, 411, 809, 849
PflFI GACNNNGTC 1 cut(s) 178
PflMI CCANNNNNTGG 2 cut(s) 145, 150
Ple19I CGATCG 2 cut(s) 207, 865
PleI GAGTC 3 cut(s) 83, 349, 381
PpsI GAGTC 3 cut(s) 83, 349, 381
Psp124BI GAGCTC 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 389
PspN4I GGNNCC 6 cut(s) 107, 628, 629, 630, 842, 922
PspOMI GGGCCC 2 cut(s) 627, 920
PspPI GGNCC 6 cut(s) 84, 627, 628, 841, 920, 921
PspXI VCTCGAGB 1 cut(s) 596
PsuI RGATCY 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 178
PvuI CGATCG 2 cut(s) 207, 865
RruI TCGCGA 2 cut(s) 38, 320
RsaI GTAC 2 cut(s) 242, 470
RsaNI GTAC 2 cut(s) 241, 469
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 234
SacII CCGCGG 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 1 cut(s) 540
Sau3AI GATC 6 cut(s) 105, 204, 294, 514, 576, 862
Sau96I GGNCC 6 cut(s) 84, 627, 628, 841, 920, 921
SchI GAGTC 3 cut(s) 83, 349, 382
ScrFI CCNGG 3 cut(s) 200, 386, 387
SduI GDGCHC 5 cut(s) 234, 631, 660, 735, 924
SfaNI GCATC 2 cut(s) 335, 499
Sfr274I CTCGAG 1 cut(s) 596
Sfr303I CCGCGG 1 cut(s) 457
SgrBI CCGCGG 1 cut(s) 457
SinI GGWCC 2 cut(s) 84, 841
SlaI CTCGAG 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 3 cut(s) 18, 30, 361
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 198, 384, 385
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 278, 836
TaiI ACGT 2 cut(s) 425, 474
TaqI TCGA 4 cut(s) 15, 173, 597, 893
TaqII GACCGA 2 cut(s) 79, 803
TasI AATT 3 cut(s) 18, 30, 361
TfiI GAWTC 4 cut(s) 187, 411, 809, 849
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseFI GTSAC 2 cut(s) 389, 405
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 2 cut(s) 389, 405
TspDTI ATGAA 1 cut(s) 56
TspMI CCCGGG 1 cut(s) 385
Tth111I GACNNNGTC 1 cut(s) 178
Van91I CCANNNNNTGG 2 cut(s) 145, 150
VpaK11BI GGWCC 2 cut(s) 84, 841
XapI RAATTY 3 cut(s) 18, 30, 361
XceI RCATGY 2 cut(s) 739, 748
XhoI CTCGAG 1 cut(s) 596
XmaI CCCGGG 1 cut(s) 385
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.