MD03G1268700.v1.1

EID1-like F-box protein 3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
35344049 .. 35344942
894 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1268700.v1.1.491

Sequence Viewer

Length: 894 bp
ATGAATGCGAACCGGCGACTGAGACCGAACCCGCCGAGCGAGCGGTCCGACTCGGACGACAACGGGATCCTGAATGAGCGGATACTCTTCCTCGTCTTCCAGTCCATGGACTGGGACATCCAAGCGCTCTCCTCGACCGCGTCGGTGAACCACAAGCTCCGGGCGATCGTGAAGCGGCTGCTGTGGCGGGAGCTCTGCAAGTACCGCGCCCCGCGCATGGCGGCGGCGCTGGGGAACTGTGCGCCCAACGGCCGGATCGGCGGCGGATGGCACACGCTCGCGAAGCTCATGTTCTTCTGCGGCGGATGCGAGCCGACTCGGAATTTCAAGGTGAGTCAACCCACCCCGGGTCACCTAGTCAAATCGTCGCGATTCTCAAAGACGTCGGGGCAGAGCTTCCTCACGAAGAAGTGCCGCGGCGATCTGCTGTACGTCAGCGACCCCTGCGAGCATCCGATGGGGGAGAAGGAGGACGATCTGGGGATTTACAGAGGGGTATTTAAGGGATTTGACAAGTCGCGGACGAGGGCGTATTTGATTGGACGGCGGGTGAAGCTCGAGGAGCGGGTAAGGTGTCCTTATTGCGGGGCCCCCGTTTGGAGCATGACTACGGCTGGGCTCGTCCCGAAGAGCGCGGCGCGGCGGCTCGGCTCGCACCACGGCGCGTTGGAGTATTTTGTTTGTGTGAGCGGGCACATGCACGGCATGTGCTGGCTCGTGCCGCTGTCGGACGATGAGAATGGATTGAGCGAGATGAACGGCTGTGATGATTCGGATTTTGATGATGATCATTACGGTGGGGTCCGCAGAATCAGCTACGACGATCGGACGGCCACGAATGGAAGCATTGGGTCGATGGGGGAGGAAGTTGTGGTGGACGGGCCCGCAAAGTGA

Protein Analysis

298

Amino Acids

33.01

Weight (kDa)

8.73

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63060
fragaria_vesca FvH4_2g23930
malus_domestica MD03G1268700.v1.1
prunus_persica Prupe.8G244600_v2.0.a1
pyrus_communis pycom03g21440
rosa_chinensis RchiOBHm_Chr6g0291561
rosa_laevigata RLG00000012107
rosa_multiflora Rmu_sc0002226.1_g000003
rosa_roxburghii Rroxscaffold_7G00175970
rosa_rugosa Rorug06G0220200
rosa_samantha Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana Rw6G028880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 386
AccB7I CCANNNNNTGG 2 cut(s) 106, 111
AccBSI CCGCTC 4 cut(s) 43, 79, 565, 690
AclWI GGATC 3 cut(s) 61, 74, 263
AcoI YGGCCR 2 cut(s) 250, 831
AcsI RAATTY 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 2 cut(s) 203, 431
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 7 cut(s) 106, 111, 217, 252, 347, 584, 597
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 6 cut(s) 157, 193, 286, 396, 556, 816
AluI AGCT 6 cut(s) 157, 193, 286, 396, 556, 816
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 3 cut(s) 61, 74, 263
Ama87I CYCGRG 2 cut(s) 346, 557
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 4 cut(s) 250, 588, 831, 881
ApaI GGGCCC 2 cut(s) 592, 885
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 8 cut(s) 127, 209, 216, 229, 244, 635, 640, 665
AspS9I GGNCC 6 cut(s) 45, 588, 589, 802, 881, 882
AsuC2I CCSGG 3 cut(s) 161, 347, 348
AsuHPI GGTGA 4 cut(s) 157, 343, 344, 562
AvaI CYCGRG 2 cut(s) 346, 557
AvaII GGWCC 2 cut(s) 45, 802
BaeGI GKGCMC 3 cut(s) 592, 696, 885
BamHI GGATCC 1 cut(s) 66
BanII GRGCYC 4 cut(s) 195, 592, 621, 885
BauI CACGAG 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 165
BccI CCATC 3 cut(s) 261, 451, 850
BceAI ACGGC 7 cut(s) 265, 560, 627, 676, 718, 775, 846
BciVI GTATCC 1 cut(s) 75
BclI TGATCA 1 cut(s) 787
BcnI CCSGG 3 cut(s) 161, 347, 348
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 2 cut(s) 128, 230
BfuI GTATCC 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 258
Bme1390I CCNGG 3 cut(s) 161, 347, 348
Bme18I GGWCC 2 cut(s) 45, 802
BmeT110I CYCGRG 2 cut(s) 346, 557
BmgT120I GGNCC 6 cut(s) 45, 588, 589, 802, 881, 882
BmiI GGNNCC 6 cut(s) 68, 589, 590, 591, 803, 883
BmrFI CCNGG 3 cut(s) 161, 347, 348
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 296, 460
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 3 cut(s) 161, 347, 348
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 5 cut(s) 105, 345, 346, 415, 658
Bsc4I CCNNNNNNNGG 7 cut(s) 106, 111, 217, 252, 347, 584, 597
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 100, 116
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 5 cut(s) 105, 345, 346, 415, 658
BseGI GGATG 4 cut(s) 117, 272, 311, 451
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 7 cut(s) 106, 111, 217, 252, 347, 584, 597
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 100, 116
BseRI GAGGAG 2 cut(s) 121, 575
BseSI GKGCMC 3 cut(s) 592, 696, 885
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 165
BseYI CCCAGC 2 cut(s) 229, 614
Bsh1285I CGRYCG 4 cut(s) 138, 168, 253, 826
BshFI GGCC 4 cut(s) 252, 590, 833, 883
BsiEI CGRYCG 4 cut(s) 138, 168, 253, 826
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 2 cut(s) 346, 557
BsiSI CCGG 4 cut(s) 13, 160, 253, 347
BslFI GGGAC 2 cut(s) 128, 608
BslI CCNNNNNNNGG 7 cut(s) 106, 111, 217, 252, 347, 584, 597
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 128, 608
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 252, 590, 833, 883
Bso31I GGTCTC 1 cut(s) 16
BsoBI CYCGRG 2 cut(s) 346, 557
Bsp120I GGGCCC 2 cut(s) 588, 881
Bsp1286I GDGCHC 5 cut(s) 195, 592, 621, 696, 885
Bsp143I GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
Bsp19I CCATGG 1 cut(s) 105
Bsp68I TCGCGA 2 cut(s) 281, 370
BspANI GGCC 4 cut(s) 252, 590, 833, 883
BspCNI CTCAG 1 cut(s) 12
BspLI GGNNCC 6 cut(s) 68, 589, 590, 591, 803, 883
BspPI GGATC 3 cut(s) 61, 74, 263
BspQI GCTCTTC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 4 cut(s) 43, 79, 565, 690
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 2 cut(s) 100, 116
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 5 cut(s) 105, 345, 346, 415, 658
BssMI GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
BssNI GRCGYC 1 cut(s) 383
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 239, 797
Bst6I CTCTTC 2 cut(s) 92, 623
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 8 cut(s) 41, 279, 311, 449, 653, 692, 713, 885
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 3 cut(s) 105, 415, 658
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 4 cut(s) 117, 272, 311, 451
BstH2I RGCGCY 2 cut(s) 128, 230
BstHHI GCGC 8 cut(s) 127, 209, 216, 229, 244, 635, 640, 665
BstKTI GATC 7 cut(s) 69, 168, 258, 424, 478, 790, 826
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
BstMCI CGRYCG 4 cut(s) 138, 168, 253, 826
BstNSI RCATGY 2 cut(s) 700, 709
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 3 cut(s) 159, 345, 346
BstSLI GKGCMC 3 cut(s) 592, 696, 885
BstV1I GCAGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BstZI CGGCCG 1 cut(s) 250
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 4 cut(s) 252, 590, 833, 883
BtgI CCRYGG 3 cut(s) 105, 415, 658
BtsCI GGATG 4 cut(s) 117, 272, 311, 451
BtuMI TCGCGA 2 cut(s) 281, 370
Cac8I GCNNGC 8 cut(s) 41, 279, 311, 449, 653, 692, 713, 885
CfoI GCGC 8 cut(s) 127, 209, 216, 229, 244, 635, 640, 665
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 6 cut(s) 45, 588, 589, 802, 881, 882
Cfr42I CCGCGG 1 cut(s) 418
Cfr9I CCCGGG 1 cut(s) 346
CpoI CGGWCCG 1 cut(s) 45
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 202, 430
CspI CGGWCCG 1 cut(s) 45
CviAII CATG 6 cut(s) 106, 217, 289, 604, 697, 706
CviQI GTAC 2 cut(s) 202, 430
DdeI CTNAG 1 cut(s) 20
DpnI GATC 7 cut(s) 68, 167, 257, 423, 477, 789, 825
DpnII GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
EaeI YGGCCR 2 cut(s) 250, 831
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 92, 623
EarI CTCTTC 2 cut(s) 92, 623
EciI GGCGGA 2 cut(s) 279, 318
Ecl136II GAGCTC 1 cut(s) 193
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 4 cut(s) 195, 592, 621, 885
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 45, 802
Eco47III AGCGCT 1 cut(s) 126
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 193
Eco88I CYCGRG 2 cut(s) 346, 557
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 588, 589
EcoO65I GGTNACC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 4 cut(s) 195, 592, 621, 885
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 6 cut(s) 109, 220, 292, 607, 700, 709
FaiI YATR 6 cut(s) 107, 218, 290, 605, 698, 707
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FaqI GGGAC 2 cut(s) 128, 608
FatI CATG 6 cut(s) 105, 216, 288, 603, 696, 705
FauI CCCGC 8 cut(s) 39, 180, 219, 540, 558, 578, 683, 892
FbaI TGATCA 1 cut(s) 787
FokI GGATG 4 cut(s) 104, 279, 318, 438
FriOI GRGCYC 4 cut(s) 195, 592, 621, 885
FspBI CTAG 1 cut(s) 356
GlaI GCGC 8 cut(s) 126, 208, 215, 228, 243, 634, 639, 664
GsaI CCCAGC 2 cut(s) 233, 618
HaeII RGCGCY 2 cut(s) 128, 230
HaeIII GGCC 4 cut(s) 252, 590, 833, 883
HapII CCGG 4 cut(s) 13, 160, 253, 347
HgaI GACGC 1 cut(s) 129
HhaI GCGC 8 cut(s) 127, 209, 216, 229, 244, 635, 640, 665
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 6 cut(s) 109, 220, 292, 607, 700, 709
Hin6I GCGC 8 cut(s) 125, 207, 214, 227, 242, 633, 638, 663
HinP1I GCGC 8 cut(s) 125, 207, 214, 227, 242, 633, 638, 663
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HinfI GANTC 6 cut(s) 50, 316, 334, 372, 770, 810
HpaII CCGG 4 cut(s) 13, 160, 253, 347
HphI GGTGA 4 cut(s) 157, 343, 344, 562
Hpy166II GTNNAC 3 cut(s) 148, 338, 877
Hpy188I TCNGA 7 cut(s) 49, 55, 321, 456, 730, 775, 828
Hpy188III TCNNGA 6 cut(s) 70, 169, 280, 369, 403, 625
Hpy8I GTNNAC 3 cut(s) 148, 338, 877
Hpy99I CGWCG 4 cut(s) 145, 370, 388, 824
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 239, 797
HpyCH4IV ACGT 2 cut(s) 383, 432
HpyCH4V TGCA 2 cut(s) 198, 700
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 2 cut(s) 383, 432
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 6 cut(s) 109, 220, 292, 607, 700, 709
HspAI GCGC 8 cut(s) 125, 207, 214, 227, 242, 633, 638, 663
Ksp22I TGATCA 1 cut(s) 787
KspI CCGCGG 1 cut(s) 418
Kzo9I GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
LguI GCTCTTC 1 cut(s) 623
LmnI GCTCC 4 cut(s) 162, 190, 562, 600
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 2 cut(s) 296, 460
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 383, 432
MaeIII GTNAC 1 cut(s) 350
MalI GATC 7 cut(s) 68, 167, 257, 423, 477, 789, 825
MbiI CCGCTC 4 cut(s) 43, 79, 565, 690
MboI GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
MboII GAAGA 5 cut(s) 79, 88, 286, 418, 640
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 5 cut(s) 195, 592, 621, 696, 885
MluCI AATT 1 cut(s) 322
MlyI GAGTC 3 cut(s) 44, 310, 343
MmeI TCCRAC 3 cut(s) 72, 648, 708
MnlI CCTC 8 cut(s) 101, 142, 410, 463, 485, 519, 553, 856
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 795
MspA1I CMGCKG 2 cut(s) 417, 724
MspI CCGG 4 cut(s) 13, 160, 253, 347
MspR9I CCNGG 3 cut(s) 161, 347, 348
MteI GCGCNGCGC 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 10
NciI CCSGG 3 cut(s) 161, 347, 348
NcoI CCATGG 1 cut(s) 105
NdeII GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
NlaIII CATG 6 cut(s) 109, 220, 292, 607, 700, 709
NlaIV GGNNCC 6 cut(s) 68, 589, 590, 591, 803, 883
NmeAIII GCCGAG 2 cut(s) 60, 627
NmuCI GTSAC 1 cut(s) 350
NruI TCGCGA 2 cut(s) 281, 370
NspI RCATGY 2 cut(s) 700, 709
PaeR7I CTCGAG 1 cut(s) 557
PciSI GCTCTTC 1 cut(s) 623
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 372, 770, 810
PflFI GACNNNGTC 1 cut(s) 139
PflMI CCANNNNNTGG 2 cut(s) 106, 111
Ple19I CGATCG 2 cut(s) 168, 826
PleI GAGTC 3 cut(s) 44, 310, 342
PpsI GAGTC 3 cut(s) 44, 310, 342
Psp124BI GAGCTC 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 2 cut(s) 229, 614
PspN4I GGNNCC 6 cut(s) 68, 589, 590, 591, 803, 883
PspOMI GGGCCC 2 cut(s) 588, 881
PspPI GGNCC 6 cut(s) 45, 588, 589, 802, 881, 882
PspXI VCTCGAGB 1 cut(s) 557
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 139
PvuI CGATCG 2 cut(s) 168, 826
RruI TCGCGA 2 cut(s) 281, 370
RsaI GTAC 2 cut(s) 203, 431
RsaNI GTAC 2 cut(s) 202, 430
RseI CAYNNNNRTG 1 cut(s) 795
Rsr2I CGGWCCG 1 cut(s) 45
RsrII CGGWCCG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 195
SacII CCGCGG 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 623
SaqAI TTAA 1 cut(s) 501
Sau3AI GATC 7 cut(s) 66, 165, 255, 421, 475, 787, 823
Sau96I GGNCC 6 cut(s) 45, 588, 589, 802, 881, 882
SchI GAGTC 3 cut(s) 44, 310, 343
ScrFI CCNGG 3 cut(s) 161, 347, 348
SduI GDGCHC 5 cut(s) 195, 592, 621, 696, 885
SfaNI GCATC 2 cut(s) 296, 460
Sfr274I CTCGAG 1 cut(s) 557
Sfr303I CCGCGG 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 418
SinI GGWCC 2 cut(s) 45, 802
SlaI CTCGAG 1 cut(s) 557
SmaI CCCGGG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 159, 345, 346
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 239, 797
TaiI ACGT 2 cut(s) 386, 435
TaqI TCGA 3 cut(s) 134, 558, 854
TaqII GACCGA 1 cut(s) 40
TasI AATT 1 cut(s) 322
TfiI GAWTC 3 cut(s) 372, 770, 810
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 17, 770
TspMI CCCGGG 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 139
Van91I CCANNNNNTGG 2 cut(s) 106, 111
VpaK11BI GGWCC 2 cut(s) 45, 802
XapI RAATTY 1 cut(s) 322
XceI RCATGY 2 cut(s) 700, 709
XhoI CTCGAG 1 cut(s) 557
XmaI CCCGGG 1 cut(s) 346
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.