Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Forward (+)

21293852 .. 21295203

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G244600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGTTTGAATCGGCGACTCAGACCGAACCCGCCGAGTCAGAGGTCCGATTCAGATGACCTCGGAATTCTCAACGAGCGGATACTCTTCCTCGTCTTCCGGTCCATGAAATGGGATATTCAGGCGCTCTGCTCAACCGCGTCGGTGAACCACAAGCTCCGAGCAATCGTGAAGAGGCTGCTGTGGCGGGAGCTCTGCGCGCATAGCGCCCCGCGCATGATAGCGTCGCTGGAGAACGCTGTGCCGAGCGGTCGAATCGGCGGCGGATGGCACACGCTCGCGAAGCTCATGTTCTTTTGCTGCGGCTGCGAGCCGACTCGGAATTTCAAGGTGAGTCGACCCACCCCGGGCCACTTCGTCAAATCGTCGAGGTTCTCTAAGACTTCGGGTCAGAGCTTCTTGACGAAGCGGTGCCGGGGCGATTTGCTGTACGTCAGCGACCCGTGCGAGCATCAGATGGGGGAGAAGGAAGACGATTTGGGGATTTACAGAGGGGTATTTAAGGGATTTGACAAGTCAAAGACGAGGGCGTATTTGATCGGACGGCGAGTAAAGCTTGAAGAAAGGGTGAGATGTCCTTACTGTGGGGCCCCCGAGTGGAGCATGACCACGGCTGGGCTGGTGCCCAAGAGCGCGGCTCGGAGGCTTGGCTCGCATCATGGGGCGTTGGAGTATTTTGTGTGTGTGAACGGGCACATGCATGGTTCGTGTTGGCTGGTGCCTTTGTCGTCCGATGATAATGAGGATGATGAGATGGACGGTAGTGATGACTCCGATTTCGATGATAATGATGGTGGAGTCCGCAGAATTGGCTACGACGATCGGACGGCCACAAATGGAAGTATGTGCTCTATGGGGGAGGAAGTTGTAGTGGACGGGCCCGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

297

Amino Acids

33.07

Weight (kDa)

8.42

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	411, 622, 718
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccBSI	CCGCTC	2 cut(s)	79, 249
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	5 cut(s)	140, 200, 214, 281, 635
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	66, 322
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	5 cut(s)	111, 347, 584, 597, 615
AgsI	TTSAA	3 cut(s)	10, 328, 560
AhdI	GACNNNNNGTC	1 cut(s)	387
AluBI	AGCT	5 cut(s)	157, 193, 286, 396, 556
AluI	AGCT	5 cut(s)	157, 193, 286, 396, 556
Alw21I	GWGCWC	2 cut(s)	195, 851
Ama87I	CYCGRG	2 cut(s)	346, 593
AoxI	GGCC	4 cut(s)	349, 588, 828, 878
ApaI	GGGCCC	2 cut(s)	592, 882
ApeKI	GCWGC	3 cut(s)	178, 300, 306
ApoI	RAATTY	2 cut(s)	66, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AspLEI	GCGC	6 cut(s)	127, 200, 202, 209, 216, 635
AspS9I	GGNCC	7 cut(s)	45, 102, 349, 588, 589, 878, 879
AsuC2I	CCSGG	3 cut(s)	347, 348, 416
AsuHPI	GGTGA	3 cut(s)	157, 343, 580
AvaI	CYCGRG	2 cut(s)	346, 593
AvaII	GGWCC	2 cut(s)	45, 102
BaeGI	GKGCMC	4 cut(s)	592, 627, 696, 882
BanI	GGYRCC	3 cut(s)	411, 622, 718
BanII	GRGCYC	3 cut(s)	195, 592, 882
BbsI	GAAGAC	2 cut(s)	88, 477
Bbv12I	GWGCWC	2 cut(s)	195, 851
BbvI	GCAGC	3 cut(s)	165, 287, 293
BccI	CCATC	4 cut(s)	261, 451, 748, 785
BceAI	ACGGC	3 cut(s)	560, 627, 843
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	3 cut(s)	347, 348, 416
BfoI	RGCGCY	2 cut(s)	128, 210
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	6 cut(s)	179, 262, 301, 304, 307, 636
BlsI	GCNGC	6 cut(s)	180, 263, 302, 305, 308, 637
Bme1390I	CCNGG	3 cut(s)	347, 348, 416
Bme18I	GGWCC	2 cut(s)	45, 102
BmeRI	GACNNNNNGTC	1 cut(s)	387
BmeT110I	CYCGRG	2 cut(s)	346, 593
BmgT120I	GGNCC	7 cut(s)	45, 102, 349, 588, 589, 878, 879
BmiI	GGNNCC	7 cut(s)	413, 589, 590, 591, 624, 720, 880
BmrFI	CCNGG	3 cut(s)	347, 348, 416
BmsI	GCATC	2 cut(s)	460, 664
BpiI	GAAGAC	2 cut(s)	88, 477
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	3 cut(s)	347, 348, 416
BsaJI	CCNNGG	5 cut(s)	61, 345, 346, 415, 609
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 347, 584, 597, 615
BseDI	CCNNGG	5 cut(s)	61, 345, 346, 415, 609
BseGI	GGATG	2 cut(s)	272, 751
BseLI	CCNNNNNNNGG	5 cut(s)	111, 347, 584, 597, 615
BseMII	CTCAG	1 cut(s)	34
BsePI	GCGCGC	1 cut(s)	198
BseSI	GKGCMC	4 cut(s)	592, 627, 696, 882
BseXI	GCAGC	3 cut(s)	165, 287, 293
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	5 cut(s)	140, 200, 214, 281, 635
Bsh1285I	CGRYCG	2 cut(s)	253, 823
BshFI	GGCC	4 cut(s)	351, 590, 830, 880
BshNI	GGYRCC	3 cut(s)	411, 622, 718
BsiEI	CGRYCG	2 cut(s)	253, 823
BsiHKAI	GWGCWC	2 cut(s)	195, 851
BsiHKCI	CYCGRG	2 cut(s)	346, 593
BsiSI	CCGG	3 cut(s)	100, 347, 415
BslI	CCNNNNNNNGG	5 cut(s)	111, 347, 584, 597, 615
BsnI	GGCC	4 cut(s)	351, 590, 830, 880
BsoBI	CYCGRG	2 cut(s)	346, 593
Bsp120I	GGGCCC	2 cut(s)	588, 878
Bsp1286I	GDGCHC	6 cut(s)	195, 592, 627, 696, 851, 882
Bsp143I	GATC	2 cut(s)	537, 820
Bsp68I	TCGCGA	1 cut(s)	281
BspANI	GGCC	4 cut(s)	351, 590, 830, 880
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	5 cut(s)	140, 200, 214, 281, 635
BspLI	GGNNCC	7 cut(s)	413, 589, 590, 591, 624, 720, 880
BspT107I	GGYRCC	3 cut(s)	411, 622, 718
BsrBI	CCGCTC	2 cut(s)	79, 249
BssECI	CCNNGG	5 cut(s)	61, 345, 346, 415, 609
BssHII	GCGCGC	1 cut(s)	198
BssMI	GATC	2 cut(s)	537, 820
Bst4CI	ACNGT	2 cut(s)	584, 761
Bst6I	CTCTTC	2 cut(s)	92, 167
BstC8I	GCNNGC	6 cut(s)	200, 279, 311, 449, 653, 882
BstDEI	CTNAG	2 cut(s)	20, 378
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	272, 751
BstFNI	CGCG	5 cut(s)	140, 200, 214, 281, 635
BstH2I	RGCGCY	2 cut(s)	128, 210
BstHHI	GCGC	6 cut(s)	127, 200, 202, 209, 216, 635
BstKTI	GATC	2 cut(s)	540, 823
BstMBI	GATC	2 cut(s)	537, 820
BstMCI	CGRYCG	2 cut(s)	253, 823
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	3 cut(s)	345, 346, 414
BstSLI	GKGCMC	4 cut(s)	592, 627, 696, 882
BstUI	CGCG	5 cut(s)	140, 200, 214, 281, 635
BstV1I	GCAGC	3 cut(s)	165, 287, 293
BstV2I	GAAGAC	2 cut(s)	88, 477
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	351, 590, 830, 880
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	272, 751
BtuMI	TCGCGA	1 cut(s)	281
Cac8I	GCNNGC	6 cut(s)	200, 279, 311, 449, 653, 882
CfoI	GCGC	6 cut(s)	127, 200, 202, 209, 216, 635
Cfr13I	GGNCC	7 cut(s)	45, 102, 349, 588, 589, 878, 879
Cfr9I	CCCGGG	1 cut(s)	346
CseI	GACGC	2 cut(s)	129, 213
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	7 cut(s)	106, 217, 289, 604, 659, 697, 701
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	20, 378
DpnI	GATC	2 cut(s)	539, 822
DpnII	GATC	2 cut(s)	537, 820
DriI	GACNNNNNGTC	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	92, 167
Eam1105I	GACNNNNNGTC	1 cut(s)	387
EarI	CTCTTC	2 cut(s)	92, 167
EciI	GGCGGA	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	3 cut(s)	195, 592, 882
Eco47I	GGWCC	2 cut(s)	45, 102
Eco53kI	GAGCTC	1 cut(s)	193
Eco88I	CYCGRG	2 cut(s)	346, 593
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	588, 589
EcoRI	GAATTC	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	3 cut(s)	195, 592, 882
FaeI	CATG	7 cut(s)	109, 220, 292, 607, 662, 700, 704
FatI	CATG	7 cut(s)	105, 216, 288, 603, 658, 696, 700
FauI	CCCGC	4 cut(s)	39, 180, 219, 889
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	6 cut(s)	179, 262, 301, 304, 307, 636
FokI	GGATG	2 cut(s)	279, 758
FriOI	GRGCYC	3 cut(s)	195, 592, 882
Fsp4HI	GCNGC	6 cut(s)	179, 262, 301, 304, 307, 636
GlaI	GCGC	6 cut(s)	126, 199, 201, 208, 215, 634
GluI	GCNGC	6 cut(s)	179, 262, 301, 304, 307, 636
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	2 cut(s)	128, 210
HaeIII	GGCC	4 cut(s)	351, 590, 830, 880
HapII	CCGG	3 cut(s)	100, 347, 415
HgaI	GACGC	2 cut(s)	129, 213
HhaI	GCGC	6 cut(s)	127, 200, 202, 209, 216, 635
Hin1II	CATG	7 cut(s)	109, 220, 292, 607, 662, 700, 704
Hin6I	GCGC	6 cut(s)	125, 198, 200, 207, 214, 633
HinP1I	GCGC	6 cut(s)	125, 198, 200, 207, 214, 633
HincII	GTYRAC	1 cut(s)	338
HindII	GTYRAC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	9 cut(s)	10, 18, 37, 50, 255, 316, 334, 770, 798
HpaII	CCGG	3 cut(s)	100, 347, 415
HphI	GGTGA	3 cut(s)	157, 343, 580
Hpy166II	GTNNAC	4 cut(s)	148, 338, 688, 874
Hpy188III	TCNNGA	3 cut(s)	169, 280, 400
Hpy8I	GTNNAC	4 cut(s)	148, 338, 688, 874
Hpy99I	CGWCG	4 cut(s)	145, 229, 370, 821
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	584, 761
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	700
HpyF3I	CTNAG	2 cut(s)	20, 378
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	7 cut(s)	109, 220, 292, 607, 662, 700, 704
HspAI	GCGC	6 cut(s)	125, 198, 200, 207, 214, 633
Kzo9I	GATC	2 cut(s)	537, 820
LmnI	GCTCC	3 cut(s)	162, 190, 600
LpnPI	CCDG	8 cut(s)	107, 113, 215, 360, 428, 600, 605, 701
Lsp1109I	GCAGC	3 cut(s)	165, 287, 293
LweI	GCATC	2 cut(s)	460, 664
MaeII	ACGT	1 cut(s)	432
MalI	GATC	2 cut(s)	539, 822
MbiI	CCGCTC	2 cut(s)	79, 249
MboI	GATC	2 cut(s)	537, 820
MboII	GAAGA	5 cut(s)	79, 88, 184, 482, 572
MhlI	GDGCHC	6 cut(s)	195, 592, 627, 696, 851, 882
MluCI	AATT	3 cut(s)	66, 322, 807
MlyI	GAGTC	6 cut(s)	12, 46, 310, 343, 764, 807
MmeI	TCCRAC	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	702
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	3 cut(s)	100, 347, 415
MspR9I	CCNGG	3 cut(s)	347, 348, 416
MvnI	CGCG	5 cut(s)	140, 200, 214, 281, 635
NciI	CCSGG	3 cut(s)	347, 348, 416
NdeII	GATC	2 cut(s)	537, 820
NlaIII	CATG	7 cut(s)	109, 220, 292, 607, 662, 700, 704
NlaIV	GGNNCC	7 cut(s)	413, 589, 590, 591, 624, 720, 880
NmeAIII	GCCGAG	2 cut(s)	60, 270
NruI	TCGCGA	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	1 cut(s)	700
PauI	GCGCGC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	10, 50, 255
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	180, 263, 302, 305, 308, 637
Ple19I	CGATCG	1 cut(s)	823
PleI	GAGTC	6 cut(s)	12, 45, 310, 342, 764, 806
PpsI	GAGTC	6 cut(s)	12, 45, 310, 342, 764, 806
Psp124BI	GAGCTC	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	614
PspN4I	GGNNCC	7 cut(s)	413, 589, 590, 591, 624, 720, 880
PspOMI	GGGCCC	2 cut(s)	588, 878
PspPI	GGNCC	7 cut(s)	45, 102, 349, 588, 589, 878, 879
PteI	GCGCGC	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	823
RruI	TCGCGA	1 cut(s)	281
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	179, 262, 301, 304, 307, 636
Sau3AI	GATC	2 cut(s)	537, 820
Sau96I	GGNCC	7 cut(s)	45, 102, 349, 588, 589, 878, 879
SchI	GAGTC	6 cut(s)	12, 46, 310, 343, 764, 807
ScrFI	CCNGG	3 cut(s)	347, 348, 416
SduI	GDGCHC	6 cut(s)	195, 592, 627, 696, 851, 882
SfaNI	GCATC	2 cut(s)	460, 664
SinI	GGWCC	2 cut(s)	45, 102
SmaI	CCCGGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	66, 322, 807
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	345, 346, 414
TaaI	ACNGT	2 cut(s)	584, 761
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	4 cut(s)	253, 337, 368, 780
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	66, 322, 807
TauI	GCSGC	3 cut(s)	264, 306, 638
TfiI	GAWTC	3 cut(s)	10, 50, 255
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	3 cut(s)	178, 300, 306
TspDTI	ATGAA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	346
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	45, 102
XapI	RAATTY	2 cut(s)	66, 322
XceI	RCATGY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmaI	CCCGGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.