Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

23334574 .. 23336081

Gene Structure 1508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTTTCGTTTCGCTTCCCTTTCTCGTTTTCTCAGCCCCCGCGTGCCACCACGTCATTCTCCGGATTCTCCATTTCCGCTGTCGCTGTCTCCGTCACCGTTGGCGCCGCAGCCGCCGGAGCTGCGATCGCGGCGTCCCGGAATCCCAGCCATCCGATTCTAGAGTGGGCCTTCTCCTCTCACCGTTCGTCTCTTTCACCATGGGGATCTATAACTCTAGCAGACGAATCCGTTGTCGAACCTAAGACCGGTTTCTCGTTTCCCGCTTCAATCGGAGATTCCCGGCGATTACTCGGCGTCGGCCTGAGGAAGAAGAGCTTACTGGGATTGAAGAACATCGATGTCTACGCCTTCGGCGTGTATGCTGATTGTGATGATGTGAAGAAACTTGTGGGAGACAAGTACGCAAATCTTCCAGCTTCAGAGATCAGGGGAAACAAGTCATTCATGGATGATCTCATGGAAGCCGATATTAAGATGACGATAAGGCTACAGATTGTCTACGGCAAACTCAACATCCGATCCGTGCGTAATGCTTTCCAAGAGTCTGTTGGAAACAGACTCAAGAAGTTCGGTGGCTCAGACAATGACGAGTTGCTTCAAAGCTTCACTAGCCTCTTCAAAGATGAGTATAAGATTCCAAGAAACTCCACCATTGATTTGACAAAAGATCCGGGCCATGTACTCAGCGTTGCAATTGAGGGGAACCATGTCGGGAGTGTGAAGAGCCATCTCTTGTGTAGATCAATCTTAGACTTGTACATTGGTGAAGAACCGTTTGATAAGAATGCAAGAGAAGATTTTCTAGACAATGCAGCTTCTCTAGCCTTCGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

279

Amino Acids

30.39

Weight (kDa)

6.97

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	96 - 268	7.4e-16	Chalcone isomerase like
Chalcone_3	PF16036	151 - 269	1.9e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	345, 501
AccII	CGCG	2 cut(s)	43, 131
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	6 cut(s)	41, 78, 108, 114, 131, 264
AclWI	GGATC	3 cut(s)	214, 516, 665
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	3 cut(s)	105, 134, 297
AfaI	GTAC	3 cut(s)	404, 684, 761
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	270, 331, 602, 622
AjiI	CACGTC	1 cut(s)	54
AluBI	AGCT	5 cut(s)	122, 318, 419, 606, 818
AluI	AGCT	5 cut(s)	122, 318, 419, 606, 818
Alw26I	GTCTC	3 cut(s)	94, 195, 390
AlwI	GGATC	3 cut(s)	214, 516, 665
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	3 cut(s)	168, 301, 676
ApeKI	GCWGC	3 cut(s)	110, 122, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AsiGI	ACCGGT	1 cut(s)	248
AsiSI	GCGATCGC	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	168, 676
AsuC2I	CCSGG	3 cut(s)	139, 283, 675
AsuHPI	GGTGA	4 cut(s)	88, 173, 189, 779
AxyI	CCTNAGG	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	109, 122, 827
BccI	CCATC	2 cut(s)	159, 738
BceAI	ACGGC	1 cut(s)	520
BcnI	CCSGG	3 cut(s)	139, 283, 675
BcoDI	GTCTC	3 cut(s)	94, 195, 390
BfaI	CTAG	6 cut(s)	161, 218, 612, 806, 824, 838
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	6 cut(s)	108, 111, 114, 123, 132, 816
BlsI	GCNGC	6 cut(s)	109, 112, 115, 124, 133, 817
Bme1390I	CCNGG	3 cut(s)	139, 283, 675
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	168, 676
BmiI	GGNNCC	2 cut(s)	106, 707
BmrFI	CCNGG	3 cut(s)	139, 283, 675
BmrI	ACTGGG	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	3 cut(s)	139, 283, 675
Bsa29I	ATCGAT	1 cut(s)	339
BsaHI	GRCGYC	3 cut(s)	105, 134, 297
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	62, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	305
BseAI	TCCGGA	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	3 cut(s)	151, 457, 516
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	4 cut(s)	47, 296, 594, 700
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	109, 122, 827
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	43, 131
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	170, 303, 678
BshNI	GGYRCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	6 cut(s)	63, 117, 139, 249, 283, 674
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	94, 195, 390
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	3 cut(s)	170, 303, 678
Bsp13I	TCCGGA	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	6 cut(s)	41, 78, 108, 114, 131, 264
BspANI	GGCC	3 cut(s)	170, 303, 678
BspCNI	CTCAG	4 cut(s)	46, 297, 593, 699
BspDI	ATCGAT	1 cut(s)	339
BspEI	TCCGGA	1 cut(s)	62
BspFNI	CGCG	2 cut(s)	43, 131
BspLI	GGNNCC	2 cut(s)	106, 707
BspPI	GGATC	3 cut(s)	214, 516, 665
BspQI	GCTCTTC	2 cut(s)	308, 719
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
BssNI	GRCGYC	3 cut(s)	105, 134, 297
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	100, 185, 777
Bst6I	CTCTTC	3 cut(s)	308, 623, 719
BstACI	GRCGYC	3 cut(s)	105, 134, 297
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	6 cut(s)	33, 243, 305, 580, 686, 751
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	151, 457, 516
BstFNI	CGCG	2 cut(s)	43, 131
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	7 cut(s)	129, 209, 429, 457, 524, 673, 746
BstMAI	GTCTC	3 cut(s)	94, 195, 390
BstMBI	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 119, 122, 128, 131, 612, 824
BstSCI	CCNGG	3 cut(s)	137, 281, 673
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	2 cut(s)	43, 131
BstV1I	GCAGC	3 cut(s)	109, 122, 827
BstX2I	RGATCY	2 cut(s)	206, 670
BstYI	RGATCY	2 cut(s)	206, 670
Bsu15I	ATCGAT	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	170, 303, 678
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	200
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	151, 457, 516
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	168, 676
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	2 cut(s)	123, 286
Csp6I	GTAC	3 cut(s)	403, 683, 760
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	5 cut(s)	201, 448, 460, 680, 710
CviQI	GTAC	3 cut(s)	403, 683, 760
DdeI	CTNAG	6 cut(s)	33, 243, 305, 580, 686, 751
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	7 cut(s)	128, 208, 428, 456, 523, 672, 745
DpnII	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
Eam1104I	CTCTTC	3 cut(s)	308, 623, 719
EarI	CTCTTC	3 cut(s)	308, 623, 719
Eco130I	CCWWGG	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	5 cut(s)	204, 451, 463, 683, 713
FaiI	YATR	8 cut(s)	202, 212, 363, 449, 461, 633, 681, 711
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	5 cut(s)	200, 447, 459, 679, 709
FauI	CCCGC	2 cut(s)	48, 271
FblI	GTMKAC	2 cut(s)	345, 501
Fnu4HI	GCNGC	6 cut(s)	108, 111, 114, 123, 132, 816
FokI	GGATG	3 cut(s)	138, 464, 503
Fsp4HI	GCNGC	6 cut(s)	108, 111, 114, 123, 132, 816
FspBI	CTAG	6 cut(s)	161, 218, 612, 806, 824, 838
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	108, 111, 114, 123, 132, 816
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	170, 303, 678
HapII	CCGG	6 cut(s)	63, 117, 139, 249, 283, 674
HgaI	GACGC	2 cut(s)	123, 286
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	3 cut(s)	105, 134, 297
Hin1II	CATG	5 cut(s)	204, 451, 463, 683, 713
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	8 cut(s)	66, 142, 157, 227, 278, 545, 561, 637
HpaII	CCGG	6 cut(s)	63, 117, 139, 249, 283, 674
HphI	GGTGA	4 cut(s)	88, 173, 189, 779
Hpy166II	GTNNAC	2 cut(s)	346, 502
Hpy188I	TCNGA	5 cut(s)	156, 275, 424, 521, 583
Hpy188III	TCNNGA	5 cut(s)	63, 161, 565, 715, 806
Hpy8I	GTNNAC	2 cut(s)	346, 502
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	181, 361, 838
HpyCH4III	ACNGT	3 cut(s)	100, 185, 777
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	695, 791, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 119, 122, 128, 131, 612, 824
HpyF3I	CTNAG	6 cut(s)	33, 243, 305, 580, 686, 751
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	3 cut(s)	105, 134, 297
Hsp92II	CATG	5 cut(s)	204, 451, 463, 683, 713
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
LguI	GCTCTTC	2 cut(s)	308, 719
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	109, 122, 827
MaeI	CTAG	6 cut(s)	161, 218, 612, 806, 824, 838
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	7 cut(s)	128, 208, 428, 456, 523, 672, 745
MboI	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
MboII	GAAGA	9 cut(s)	322, 325, 343, 394, 404, 610, 736, 782, 809
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	206, 670
MluCI	AATT	1 cut(s)	696
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	554, 555
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	187, 300, 626, 694
MroI	TCCGGA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	6 cut(s)	63, 117, 139, 249, 283, 674
MspR9I	CCNGG	3 cut(s)	139, 283, 675
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	793
MvnI	CGCG	2 cut(s)	43, 131
MwoI	GCNNNNNNNGC	7 cut(s)	113, 119, 122, 128, 131, 612, 824
NarI	GGCGCC	1 cut(s)	105
NciI	CCSGG	3 cut(s)	139, 283, 675
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
NlaIII	CATG	5 cut(s)	204, 451, 463, 683, 713
NlaIV	GGNNCC	2 cut(s)	106, 707
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	94
PciSI	GCTCTTC	2 cut(s)	308, 719
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 354
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	6 cut(s)	66, 142, 157, 227, 278, 637
PfoI	TCCNGGA	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	6 cut(s)	109, 112, 115, 124, 133, 817
Ple19I	CGATCG	1 cut(s)	129
PleI	GAGTC	2 cut(s)	553, 555
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	553, 555
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	106, 707
PspPI	GGNCC	2 cut(s)	168, 676
PsuI	RGATCY	2 cut(s)	206, 670
PvuI	CGATCG	1 cut(s)	129
RgaI	GCGATCGC	1 cut(s)	129
RsaI	GTAC	3 cut(s)	404, 684, 761
RsaNI	GTAC	3 cut(s)	403, 683, 760
SapI	GCTCTTC	2 cut(s)	308, 719
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	6 cut(s)	108, 111, 114, 123, 132, 816
Sau3AI	GATC	7 cut(s)	126, 206, 426, 454, 521, 670, 743
Sau96I	GGNCC	2 cut(s)	168, 676
SchI	GAGTC	2 cut(s)	554, 555
ScrFI	CCNGG	3 cut(s)	139, 283, 675
SetI	ASST	7 cut(s)	56, 124, 244, 320, 421, 608, 820
SfaAI	GCGATCGC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	491
SfoI	GGCGCC	1 cut(s)	106
SgfI	GCGATCGC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	696
SsiI	CCGC	6 cut(s)	41, 78, 108, 114, 131, 264
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	6 cut(s)	161, 218, 612, 806, 824, 838
StyD4I	CCNGG	3 cut(s)	137, 281, 673
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	100, 185, 777
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	237, 339, 831
TasI	AATT	1 cut(s)	696
TatI	WGTACW	2 cut(s)	682, 759
TauI	GCSGC	3 cut(s)	110, 116, 134
TfiI	GAWTC	6 cut(s)	66, 142, 157, 227, 278, 637
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	110, 122, 815
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	82, 220, 514
XbaI	TCTAGA	2 cut(s)	160, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmiI	GTMKAC	2 cut(s)	345, 501
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	6 cut(s)	161, 218, 612, 806, 824, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.