Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

53147564 .. 53149811

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG340000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCCGCCACCCATTCATCCGCCACCTCACGTCCCTTCACCGCCGCCGTAACCCTCGCCGCCGGCGCTGCCGCATTCGCTGCCGTCGCGCACACTAACCCCACGAACCCATTTCTCCAGAACGCACTGAATTTCTTCCTCGCCGATCGCTCGCTGCCGCTTTGGGGCTCGCTGTCCCTGAACGACACTCCGGCCTCCGTCGTCGATTCCAAGACGGGGGTGTCGTTTCCGTCGGTGCTGGACGGGACTCGGCGACTTCTGGGAATTGGGTTGAGGAGAAAACGGCTGCTGGGGTTGAAGAACATCGATGTGTATGCATATGGTATTTATGCTGATGATATAGACGTAAAGAAATTACTCGGCAAAAAATATGGGAAATTGTCCCTTTCTGAACTCCAGGAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAAATTGAGCATCGGTTCTGTACGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGATCAGATAATCAAGAATTGCTACAAAGATTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGATCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGACGGAAATGATGTAGGGAGCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCTTCTATCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

283

Amino Acids

31.02

Weight (kDa)

8.5

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	101 - 273	1.7e-11	Chalcone isomerase like
Chalcone_3	PF16036	151 - 271	7.5e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	268
AccII	CGCG	1 cut(s)	137
AciI	CCGC	8 cut(s)	13, 54, 69, 90, 93, 108, 120, 206
AclWI	GGATC	2 cut(s)	601, 670
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	2 cut(s)	563, 827
AfaI	GTAC	3 cut(s)	471, 543, 699
AfiI	CCNNNNNNNGG	2 cut(s)	212, 264
AgsI	TTSAA	3 cut(s)	346, 509, 637
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	823
AluI	AGCT	1 cut(s)	823
AlwI	GGATC	2 cut(s)	601, 670
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	116, 128, 202, 334
ApoI	RAATTY	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	801, 833
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	116, 139
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	79, 794
AsuII	TTCGAA	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	657
BbvI	GCAGC	4 cut(s)	103, 115, 189, 321
BceAI	ACGGC	3 cut(s)	80, 116, 347
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	8 cut(s)	93, 108, 117, 120, 129, 203, 206, 335
BlsI	GCNGC	8 cut(s)	94, 109, 118, 121, 130, 204, 207, 336
Bme1390I	CCNGG	2 cut(s)	446, 690
BmgBI	CACGTC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	571, 687, 789
BmrFI	CCNGG	2 cut(s)	446, 690
BmsI	GCATC	2 cut(s)	540, 744
BpmI	CTGGAG	2 cut(s)	149, 428
Bpu14I	TTCGAA	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	690
Bsa29I	ATCGAT	2 cut(s)	354, 761
BsaAI	YACGTR	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 264
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	446
BseCI	ATCGAT	2 cut(s)	354, 761
BseGI	GGATG	2 cut(s)	65, 735
BseLI	CCNNNNNNNGG	2 cut(s)	212, 264
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	337, 572
BseXI	GCAGC	4 cut(s)	103, 115, 189, 321
BseYI	CCCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	242
BshVI	ATCGAT	2 cut(s)	354, 761
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	111, 239, 689
BslFI	GGGAC	4 cut(s)	66, 208, 307, 415
BslI	CCNNNNNNNGG	2 cut(s)	212, 264
BsmFI	GGGAC	4 cut(s)	66, 208, 307, 415
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	193, 593, 662, 673
BspACI	CCGC	8 cut(s)	13, 54, 69, 90, 93, 108, 120, 206
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	2 cut(s)	354, 761
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	571, 687, 789
BspPI	GGATC	2 cut(s)	601, 670
BspT104I	TTCGAA	1 cut(s)	703
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	4 cut(s)	193, 593, 662, 673
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	112, 200, 218
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	65, 735
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 139
BstKTI	GATC	4 cut(s)	196, 596, 665, 676
BstMBI	GATC	4 cut(s)	193, 593, 662, 673
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 128, 134, 528, 741
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	444, 688
BstSNI	TACGTA	1 cut(s)	545
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	103, 115, 189, 321
BstX2I	RGATCY	2 cut(s)	662, 673
BstYI	RGATCY	2 cut(s)	662, 673
Bsu15I	ATCGAT	2 cut(s)	354, 761
BsuRI	GGCC	1 cut(s)	242
BsuTUI	ATCGAT	2 cut(s)	354, 761
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	65, 735
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	112, 200, 218
CfoI	GCGC	2 cut(s)	116, 139
Cfr10I	RCCGGY	1 cut(s)	110
ClaI	ATCGAT	2 cut(s)	354, 761
Csp6I	GTAC	3 cut(s)	470, 542, 698
CviJI	RGCY	8 cut(s)	37, 216, 242, 334, 693, 806, 823, 833
CviKI_1	RGCY	8 cut(s)	37, 216, 242, 334, 693, 806, 823, 833
CviQI	GTAC	3 cut(s)	470, 542, 698
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	195, 595, 664, 675
DpnII	GATC	4 cut(s)	193, 593, 662, 673
DrdI	GACNNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	58
Eco105I	TACGTA	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	563, 827
EcoRII	CCWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	218
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FaqI	GGGAC	4 cut(s)	66, 208, 307, 415
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	8 cut(s)	93, 108, 117, 120, 129, 203, 206, 335
FokI	GGATG	2 cut(s)	52, 722
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	8 cut(s)	93, 108, 117, 120, 129, 203, 206, 335
GlaI	GCGC	2 cut(s)	115, 138
GluI	GCNGC	8 cut(s)	93, 108, 117, 120, 129, 203, 206, 335
GsaI	CCCAGC	1 cut(s)	341
GsuI	CTGGAG	2 cut(s)	149, 428
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	3 cut(s)	111, 239, 689
HhaI	GCGC	2 cut(s)	116, 139
Hin6I	GCGC	2 cut(s)	114, 137
HinP1I	GCGC	2 cut(s)	114, 137
HinfI	GANTC	5 cut(s)	254, 295, 560, 621, 763
HpaII	CCGG	3 cut(s)	111, 239, 689
HphI	GGTGA	2 cut(s)	79, 794
Hpy188I	TCNGA	3 cut(s)	439, 582, 598
Hpy188III	TCNNGA	4 cut(s)	166, 605, 767, 845
Hpy99I	CGWCG	4 cut(s)	137, 251, 254, 283
HpyAV	CCTTC	3 cut(s)	31, 94, 851
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	3 cut(s)	79, 393, 544
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 128, 134, 528, 741
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	3 cut(s)	79, 393, 544
HspAI	GCGC	2 cut(s)	114, 137
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	193, 593, 662, 673
LmnI	GCTCC	1 cut(s)	732
Lsp1109I	GCAGC	4 cut(s)	103, 115, 189, 321
LweI	GCATC	2 cut(s)	540, 744
MaeII	ACGT	3 cut(s)	79, 393, 544
MaeIII	GTNAC	2 cut(s)	97, 493
MalI	GATC	4 cut(s)	195, 595, 664, 675
MboI	GATC	4 cut(s)	193, 593, 662, 673
MboII	GAAGA	3 cut(s)	175, 358, 824
MflI	RGATCY	2 cut(s)	662, 673
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	9 cut(s)	178, 312, 401, 425, 524, 608, 632, 645, 826
MlyI	GAGTC	2 cut(s)	289, 569
MnlI	CCTC	8 cut(s)	85, 113, 197, 253, 315, 550, 653, 778
Mph1103I	ATGCAT	1 cut(s)	367
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	3 cut(s)	111, 239, 689
MspR9I	CCNGG	2 cut(s)	446, 690
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 128, 134, 528, 741
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	193, 593, 662, 673
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	571, 687, 789
NmeAIII	GCCGAG	2 cut(s)	277, 387
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	254, 621, 763
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	8 cut(s)	94, 109, 118, 121, 130, 204, 207, 336
Ple19I	CGATCG	1 cut(s)	196
PleI	GAGTC	2 cut(s)	289, 568
PpsI	GAGTC	2 cut(s)	289, 568
Ppu21I	YACGTR	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	571, 687, 789
PsuI	RGATCY	2 cut(s)	662, 673
PvuI	CGATCG	1 cut(s)	196
RsaI	GTAC	3 cut(s)	471, 543, 699
RsaNI	GTAC	3 cut(s)	470, 542, 698
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	8 cut(s)	93, 108, 117, 120, 129, 203, 206, 335
Sau3AI	GATC	4 cut(s)	193, 593, 662, 673
SchI	GAGTC	2 cut(s)	289, 569
ScrFI	CCNGG	2 cut(s)	446, 690
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	7 cut(s)	77, 82, 396, 493, 547, 784, 825
SfaNI	GCATC	2 cut(s)	540, 744
SfuI	TTCGAA	1 cut(s)	703
SgrAI	CRCCGGYG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	356
SnaBI	TACGTA	1 cut(s)	545
Sse9I	AATT	9 cut(s)	178, 312, 401, 425, 524, 608, 632, 645, 826
SsiI	CCGC	8 cut(s)	13, 54, 69, 90, 93, 108, 120, 206
StyD4I	CCNGG	2 cut(s)	444, 688
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	3 cut(s)	82, 396, 547
TaqI	TCGA	4 cut(s)	252, 354, 703, 761
TasI	AATT	9 cut(s)	178, 312, 401, 425, 524, 608, 632, 645, 826
TatI	WGTACW	2 cut(s)	469, 697
TauI	GCSGC	4 cut(s)	95, 110, 122, 208
TfiI	GAWTC	3 cut(s)	254, 621, 763
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	116, 128, 202, 334
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	54, 657
TspGWI	ACGGA	3 cut(s)	235, 267, 732
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.