Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Reverse (-)

15968079 .. 15970475

Gene Structure 2397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCCGCCACCCCTTCATCCGCCACCTCACGTCCCTTCACCGCCGCCGTAACCCTCGCCGTCGGCGCTGCCGCATTCGCCGGAGTCGCGGCCGTCACGCACACTAACCCCACGAACCCATTTCTCCAGAACGCACTGAATTTCTTCCTCGCCGATCGCCCGCTGCCGCTTTGGGGCTCGCTGTCCCTGAACGACACTCCGGCCGCCGTCGTCGATTCCAAGACGGGGGTGTCGTTTCCGTCGGTGCTGGACGGGACTCGGCGACTTCTGGGAATTGGGTTGAGGAGAAAACGCTTGCTGGGGTTGAAGAACATCGATGTGTATGCATATGGTATTTATGCTGATGATATAGACGTAAAGAAATTACTCAGCCAAAAATATGGGAAATTGTCCCTTTCTGAACTCCAGGAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAGATTGAGCATCGGTTCTGTACGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGATCTGATAATCAAGAATTACTACAAAGATTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGATCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGACGGAAATGATGTAGGAACCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCCTCTGTCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

286

Amino Acids

31.32

Weight (kDa)

7.74

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	104 - 276	1e-11	Chalcone isomerase like
Chalcone_3	PF16036	154 - 274	5.7e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccII	CGCG	1 cut(s)	137
AclWI	GGATC	2 cut(s)	610, 679
AcoI	YGGCCR	2 cut(s)	138, 249
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	572, 836
AfaI	GTAC	3 cut(s)	480, 552, 708
AfiI	CCNNNNNNNGG	2 cut(s)	221, 273
AgsI	TTSAA	3 cut(s)	355, 518, 646
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	1 cut(s)	832
AluI	AGCT	1 cut(s)	832
AlwI	GGATC	2 cut(s)	610, 679
AoxI	GGCC	3 cut(s)	138, 249, 840
ApeKI	GCWGC	2 cut(s)	116, 211
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	2 cut(s)	79, 803
AsuII	TTCGAA	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	103, 198
BccI	CCATC	1 cut(s)	752
BceAI	ACGGC	4 cut(s)	80, 92, 125, 239
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	7 cut(s)	93, 117, 120, 138, 212, 215, 252
BlsI	GCNGC	7 cut(s)	94, 118, 121, 139, 213, 216, 253
Bme1390I	CCNGG	2 cut(s)	455, 699
BmgBI	CACGTC	1 cut(s)	80
BmiI	GGNNCC	4 cut(s)	580, 696, 742, 798
BmrFI	CCNGG	2 cut(s)	455, 699
BmsI	GCATC	1 cut(s)	549
BpmI	CTGGAG	2 cut(s)	158, 437
Bpu14I	TTCGAA	1 cut(s)	712
BpuMI	CCSGG	1 cut(s)	699
Bsa29I	ATCGAT	2 cut(s)	363, 770
BsaAI	YACGTR	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 273
BseBI	CCWGG	1 cut(s)	455
BseCI	ATCGAT	2 cut(s)	363, 770
BseGI	GGATG	2 cut(s)	65, 744
BseLI	CCNNNNNNNGG	2 cut(s)	221, 273
BseMII	CTCAG	2 cut(s)	47, 430
BseRI	GAGGAG	2 cut(s)	346, 581
BseX3I	CGGCCG	2 cut(s)	138, 249
BseXI	GCAGC	2 cut(s)	103, 198
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	3 cut(s)	141, 205, 252
BshFI	GGCC	3 cut(s)	140, 251, 842
BshVI	ATCGAT	2 cut(s)	363, 770
BsiEI	CGRYCG	3 cut(s)	141, 205, 252
BsiSI	CCGG	3 cut(s)	129, 248, 698
BslFI	GGGAC	4 cut(s)	66, 217, 316, 424
BslI	CCNNNNNNNGG	2 cut(s)	221, 273
BsmFI	GGGAC	4 cut(s)	66, 217, 316, 424
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	140, 251, 842
Bsp119I	TTCGAA	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	202, 602, 671, 682
BspANI	GGCC	3 cut(s)	140, 251, 842
BspCNI	CTCAG	2 cut(s)	46, 429
BspDI	ATCGAT	2 cut(s)	363, 770
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	580, 696, 742, 798
BspPI	GGATC	2 cut(s)	610, 679
BspT104I	TTCGAA	1 cut(s)	712
BssMI	GATC	4 cut(s)	202, 602, 671, 682
BssSI	CACGAG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	209, 227, 344
BstDEI	CTNAG	2 cut(s)	33, 416
BstF5I	GGATG	2 cut(s)	65, 744
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	205, 605, 674, 685
BstMBI	GATC	4 cut(s)	202, 602, 671, 682
BstMCI	CGRYCG	3 cut(s)	141, 205, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 125, 134, 537
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	453, 697
BstSNI	TACGTA	1 cut(s)	554
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	103, 198
BstX2I	RGATCY	3 cut(s)	602, 671, 682
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	3 cut(s)	602, 671, 682
BstZI	CGGCCG	2 cut(s)	138, 249
Bsu15I	ATCGAT	2 cut(s)	363, 770
BsuRI	GGCC	3 cut(s)	140, 251, 842
BsuTUI	ATCGAT	2 cut(s)	363, 770
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	65, 744
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	209, 227, 344
CfoI	GCGC	1 cut(s)	116
ClaI	ATCGAT	2 cut(s)	363, 770
Csp6I	GTAC	3 cut(s)	479, 551, 707
CviJI	RGCY	9 cut(s)	37, 140, 225, 251, 420, 702, 815, 832, 842
CviKI_1	RGCY	9 cut(s)	37, 140, 225, 251, 420, 702, 815, 832, 842
CviQI	GTAC	3 cut(s)	479, 551, 707
DdeI	CTNAG	2 cut(s)	33, 416
DpnI	GATC	4 cut(s)	204, 604, 673, 684
DpnII	GATC	4 cut(s)	202, 602, 671, 682
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	138, 249
EagI	CGGCCG	2 cut(s)	138, 249
EciI	GGCGGA	1 cut(s)	58
EclXI	CGGCCG	2 cut(s)	138, 249
Eco105I	TACGTA	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	227
Eco52I	CGGCCG	2 cut(s)	138, 249
Eco57I	CTGAAG	2 cut(s)	572, 836
EcoRII	CCWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	227
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	4 cut(s)	66, 217, 316, 424
FauI	CCCGC	2 cut(s)	61, 216
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	7 cut(s)	93, 117, 120, 138, 212, 215, 252
FokI	GGATG	2 cut(s)	52, 731
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	7 cut(s)	93, 117, 120, 138, 212, 215, 252
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	7 cut(s)	93, 117, 120, 138, 212, 215, 252
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	158, 437
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	140, 251, 842
HapII	CCGG	3 cut(s)	129, 248, 698
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	6 cut(s)	132, 263, 304, 569, 630, 772
HpaII	CCGG	3 cut(s)	129, 248, 698
HphI	GGTGA	2 cut(s)	79, 803
Hpy188I	TCNGA	3 cut(s)	448, 591, 607
Hpy188III	TCNNGA	4 cut(s)	175, 614, 776, 854
Hpy99I	CGWCG	4 cut(s)	113, 260, 263, 292
HpyAV	CCTTC	4 cut(s)	31, 72, 94, 860
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	3 cut(s)	79, 402, 553
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 125, 134, 537
HpyF3I	CTNAG	2 cut(s)	33, 416
HpySE526I	ACGT	3 cut(s)	79, 402, 553
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	202, 602, 671, 682
Lsp1109I	GCAGC	2 cut(s)	103, 198
LweI	GCATC	1 cut(s)	549
MaeII	ACGT	3 cut(s)	79, 402, 553
MaeIII	GTNAC	3 cut(s)	97, 142, 502
MalI	GATC	4 cut(s)	204, 604, 673, 684
MboI	GATC	4 cut(s)	202, 602, 671, 682
MboII	GAAGA	3 cut(s)	184, 367, 833
MflI	RGATCY	3 cut(s)	602, 671, 682
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	8 cut(s)	187, 321, 410, 434, 617, 641, 654, 835
MlyI	GAGTC	3 cut(s)	141, 298, 578
MnlI	CCTC	8 cut(s)	85, 113, 206, 324, 559, 662, 787, 853
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	3 cut(s)	129, 248, 698
MspR9I	CCNGG	2 cut(s)	455, 699
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	113, 125, 134, 537
NciI	CCSGG	1 cut(s)	699
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	202, 602, 671, 682
NlaIV	GGNNCC	4 cut(s)	580, 696, 742, 798
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	142, 502
NsiI	ATGCAT	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	263, 630, 772
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	7 cut(s)	94, 118, 121, 139, 213, 216, 253
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	3 cut(s)	140, 298, 577
PpsI	GAGTC	3 cut(s)	140, 298, 577
Ppu21I	YACGTR	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	4 cut(s)	580, 696, 742, 798
PsuI	RGATCY	3 cut(s)	602, 671, 682
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	480, 552, 708
RsaNI	GTAC	3 cut(s)	479, 551, 707
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	7 cut(s)	93, 117, 120, 138, 212, 215, 252
Sau3AI	GATC	4 cut(s)	202, 602, 671, 682
SchI	GAGTC	3 cut(s)	141, 298, 578
ScrFI	CCNGG	2 cut(s)	455, 699
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	7 cut(s)	77, 82, 405, 502, 556, 793, 834
SfaNI	GCATC	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	365
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	8 cut(s)	187, 321, 410, 434, 617, 641, 654, 835
StyD4I	CCNGG	2 cut(s)	453, 697
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	3 cut(s)	82, 405, 556
TaqI	TCGA	4 cut(s)	261, 363, 712, 770
TasI	AATT	8 cut(s)	187, 321, 410, 434, 617, 641, 654, 835
TatI	WGTACW	2 cut(s)	478, 706
TauI	GCSGC	5 cut(s)	95, 122, 140, 217, 254
TfiI	GAWTC	3 cut(s)	263, 630, 772
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	142, 502
TseI	GCWGC	2 cut(s)	116, 211
Tsp45I	GTSAC	2 cut(s)	142, 502
TspDTI	ATGAA	2 cut(s)	54, 666
TspGWI	ACGGA	2 cut(s)	276, 741
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.