Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

21071971 .. 21074414

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G240100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTGTCCTTCCGCTTCCCCTTCTCGTTTCCTCAGCCCCCAAAGCACACTCCTCCCACCTACTCCTCCTCCTCCTCTGCCACGTCGCGTCCCTTCTCTGCCACCGCCGCCGCCGTAGCCATCGCCGCTGGTGCCGCAGCTGTCGCCGGAGTGGCTGCTGCCACCCACAACTCCACAAACCAAGCACACCCATTTCTCCAAAACGCACTGAATCTCTTCTTTGCCAATCGCTCTCTGCCACTTTGGGGTTCGCTCTCTCTAAACTACACTTCGAGCTCCGTCGTTGATTCCAAGACTGGCGCCTCGTTTCCTTCGGTTCTGGATGACTCTCGCCTACTTCTTGGAATTGGGTTGCGGAGAAAACGAGTGTTCGGCTTAAAGAACATCGATGTCTATGCATTTGGTATTTATGCTGATGACAGGGACATAAAAGAATTGCTTAGCGAGAAATATGGGAAATTGTCCGTTTCGGAACTTCAGGACAACAAGGAGTATAGTGATGATTTGCTGGAAACTGATATAGGCATGACTGTCAGACTACAAATAGTTTATGGCAGACTGAGCATTAGTTCCGTGCGTAGTGCTTTTGAGGAGTCTGTCGGAAGCAGACTTAGGAAGTTTGGAGGCTCAGATAATCAAGAATTGCTCCAAACGTTCACTTCCCAATTCAAAGACGAATATAAAATACCAAAGGGATCTGTAATAGATCTCTCAAGGGAACGGGGCTATGTACTTCGAACAACTATTGATGGAAAGGAGGTGGGAAGCATAGAGAGTAAACTCCTGTGTAAGTCGCTTCTGGATTTATATATAGGCGAGGAACCATTTGATAAAGAAGCGAAAGAAGATGTGAAGCTCAATTTGGCCTCTCTCCTTCACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

295

Amino Acids

32.24

Weight (kDa)

7.76

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 299
AccII	CGCG	1 cut(s)	88
AciI	CCGC	7 cut(s)	13, 105, 108, 111, 126, 135, 355
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	670
AjiI	CACGTC	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AluBI	AGCT	3 cut(s)	140, 276, 856
AluI	AGCT	3 cut(s)	140, 276, 856
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	137, 155, 158
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	736
BanI	GGYRCC	2 cut(s)	131, 299
BanII	GRGCYC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	142, 145, 149
BccI	CCATC	2 cut(s)	128, 743
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BfoI	RGCGCY	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	7 cut(s)	108, 111, 126, 135, 138, 156, 159
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	7 cut(s)	109, 112, 127, 136, 139, 157, 160
BmgBI	CACGTC	1 cut(s)	84
BmiI	GGNNCC	3 cut(s)	133, 301, 822
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	736
BpuEI	CTTGAG	1 cut(s)	697
Bsa29I	ATCGAT	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	387
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	47, 551, 642
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	6 cut(s)	42, 55, 58, 61, 64, 605
BseXI	GCAGC	3 cut(s)	142, 145, 149
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	866
BshNI	GGYRCC	2 cut(s)	131, 299
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	75, 437
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	75, 437
BsnI	GGCC	1 cut(s)	866
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	695, 706
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	7 cut(s)	13, 105, 108, 111, 126, 135, 355
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	3 cut(s)	46, 552, 641
BspDI	ATCGAT	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	133, 301, 822
BspPI	GGATC	1 cut(s)	703
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	2 cut(s)	131, 299
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	695, 706
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	736
BstDEI	CTNAG	5 cut(s)	33, 440, 560, 611, 628
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	698, 709
BstMBI	GATC	2 cut(s)	695, 706
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 107, 116, 125, 131, 134, 143, 152, 561
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	142, 145, 149
BstX2I	RGATCY	2 cut(s)	695, 706
BstYI	RGATCY	2 cut(s)	695, 706
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	866
BsuTUI	ATCGAT	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	5 cut(s)	33, 440, 560, 611, 628
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	2 cut(s)	697, 708
DpnII	GATC	2 cut(s)	695, 706
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
FaeI	CATG	1 cut(s)	529
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	75, 437
FatI	CATG	1 cut(s)	525
Fnu4HI	GCNGC	7 cut(s)	108, 111, 126, 135, 138, 156, 159
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	7 cut(s)	108, 111, 126, 135, 138, 156, 159
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	7 cut(s)	108, 111, 126, 135, 138, 156, 159
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	866
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	211, 287, 326, 593
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	657, 779
Hpy188I	TCNGA	4 cut(s)	472, 536, 602, 631
Hpy188III	TCNNGA	4 cut(s)	320, 479, 638, 800
Hpy8I	GTNNAC	2 cut(s)	657, 779
Hpy99I	CGWCG	2 cut(s)	88, 284
HpyAV	CCTTC	5 cut(s)	19, 31, 103, 321, 884
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	2 cut(s)	83, 653
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 107, 116, 125, 131, 134, 143, 152, 561
HpyF3I	CTNAG	5 cut(s)	33, 440, 560, 611, 628
HpySE526I	ACGT	2 cut(s)	83, 653
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	529
HspAI	GCGC	1 cut(s)	300
KasI	GGCGCC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	695, 706
LmnI	GCTCC	2 cut(s)	281, 651
LpnPI	CCDG	9 cut(s)	114, 160, 282, 305, 406, 464, 494, 785, 797
Lsp1109I	GCAGC	3 cut(s)	142, 145, 149
MaeII	ACGT	2 cut(s)	83, 653
MalI	GATC	2 cut(s)	697, 708
MboI	GATC	2 cut(s)	695, 706
MboII	GAAGA	2 cut(s)	208, 857
MflI	RGATCY	2 cut(s)	695, 706
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	6 cut(s)	345, 434, 458, 641, 665, 859
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	320, 602
MmeI	TCCRAC	1 cut(s)	580
Mph1103I	ATGCAT	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	377
MspA1I	CMGCKG	2 cut(s)	128, 140
MspI	CCGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	9 cut(s)	43, 107, 116, 125, 131, 134, 143, 152, 561
NarI	GGCGCC	1 cut(s)	300
NdeII	GATC	2 cut(s)	695, 706
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	3 cut(s)	133, 301, 822
NsiI	ATGCAT	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	211, 287
PkrI	GCNGC	7 cut(s)	109, 112, 127, 136, 139, 157, 160
PleI	GAGTC	2 cut(s)	320, 601
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	2 cut(s)	320, 601
Psp124BI	GAGCTC	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	133, 301, 822
PsuI	RGATCY	2 cut(s)	695, 706
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	7 cut(s)	108, 111, 126, 135, 138, 156, 159
Sau3AI	GATC	2 cut(s)	695, 706
SchI	GAGTC	2 cut(s)	320, 602
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	7 cut(s)	62, 86, 142, 278, 656, 762, 858
SfoI	GGCGCC	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	736
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	6 cut(s)	345, 434, 458, 641, 665, 859
SsiI	CCGC	7 cut(s)	13, 105, 108, 111, 126, 135, 355
SspDI	GGCGCC	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	2 cut(s)	86, 656
TaqI	TCGA	3 cut(s)	272, 387, 736
TasI	AATT	6 cut(s)	345, 434, 458, 641, 665, 859
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	4 cut(s)	110, 113, 128, 137
TfiI	GAWTC	2 cut(s)	211, 287
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	3 cut(s)	137, 155, 158
TspGWI	ACGGA	3 cut(s)	268, 454, 562
TspRI	CASTG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.