Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

34934945 .. 34937631

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1263700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGTCTTTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCGAAGCGCACTCCCACCTACTCATTATCCGCCACGTCACGCCCTTTCTATGCCGCCGCCGCCGTCACCGTAGCTTCCGGGGTGGCCGTAGTCGCCGGGGTCGCTGCTGCCTCCCACAGCTCCACACAGCCATTTCTCCAAAACGCACTCAATTCCTTCTTTGCCAGTCGCTCTCTGCCGCTTTGGGGATCGCTTTCTCTGACCGACACACCGAGCTCCGTCGTCGATTCCAAGACCGGTGCTTCGTTTCCTTCCGTTCTTGCGGAGTCTCGGCGGCTTCTGGGAATTGGGTTGCGGAGAAAAAGAGTGATGGGCTTGAAGAACATCGATGTCTATTCATTTGGGGTTTATGCTGATGATAATGACATAAAGAATTTGCTTGGCGAGAAATATGGGAAATTGTCCGTTTCGGAACTCAAGGACAAGGAGTATAGTGATGATCTGCTGGAAGCTGATATATGTATGACAGTTAGGCTTCAAATAGTTTACGGCAGATTGAGCATTGGTTCTGTACGTAGTGCTTTTGAGGAGTCTGTGGGTAGCAGACTACAGAAGTTTGGAGGATCCGATAACAAAGAATTGCTCAAAAGGTTCACGTCCCAATTCAAAGACGAATATAAAATACCTAAGGGATCTATAATAGATCTCTCAAGGGAACGGGGCTATGTACTTCGAACAACAATTGACGGAAAGGAGGTGGGAAGCATAGAGAGCAAGCTCCTGTGCCGATCGCTTCTGGATTTGTATATAGGCGAGGAGCCATTTGATAAACAAGCCAAAGAAGATGTGAAGCTCAATGTGGCCTCTCTCCTTCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

287

Amino Acids

31.43

Weight (kDa)

9.25

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	105 - 276	2.3e-13	Chalcone isomerase like
Chalcone_3	PF16036	158 - 274	6e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	13, 69, 93, 96, 99, 218, 302, 313, 334
AclWI	GGATC	4 cut(s)	235, 597, 610, 679
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	836
AfaI	GTAC	2 cut(s)	552, 708
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	358, 518, 646
AjiI	CACGTC	2 cut(s)	75, 636
AluBI	AGCT	6 cut(s)	113, 159, 255, 491, 757, 832
AluI	AGCT	6 cut(s)	113, 159, 255, 491, 757, 832
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	4 cut(s)	235, 597, 610, 679
AoxI	GGCC	2 cut(s)	123, 840
ApeKI	GCWGC	2 cut(s)	143, 146
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AsiGI	ACCGGT	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	118, 136
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	712
AxyI	CCTNAGG	1 cut(s)	666
BamHI	GGATCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	130, 133
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	3 cut(s)	86, 110, 544
BcnI	CCSGG	2 cut(s)	118, 136
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	7 cut(s)	93, 96, 99, 144, 147, 218, 314
BlsI	GCNGC	7 cut(s)	94, 97, 100, 145, 148, 219, 315
Bme1390I	CCNGG	2 cut(s)	118, 136
BmgBI	CACGTC	2 cut(s)	75, 636
BmiI	GGNNCC	2 cut(s)	604, 798
BmrFI	CCNGG	2 cut(s)	118, 136
Bpu14I	TTCGAA	1 cut(s)	712
BpuEI	CTTGAG	2 cut(s)	440, 673
BpuMI	CCSGG	2 cut(s)	118, 136
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	117, 135
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	117, 135
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	581, 809
BseXI	GCAGC	2 cut(s)	130, 133
Bsh1285I	CGRYCG	1 cut(s)	770
BshFI	GGCC	2 cut(s)	125, 842
BshTI	ACCGGT	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	770
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	117, 135, 276
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	125, 842
Bsp119I	TTCGAA	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
BspACI	CCGC	9 cut(s)	13, 69, 93, 96, 99, 218, 302, 313, 334
BspANI	GGCC	2 cut(s)	125, 842
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	604, 798
BspPI	GGATC	4 cut(s)	235, 597, 610, 679
BspT104I	TTCGAA	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	117, 135
BssMI	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
Bst4CI	ACNGT	2 cut(s)	109, 508
BstBAI	YACGTR	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	33, 666
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	6 cut(s)	230, 481, 605, 674, 685, 770
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
BstMCI	CGRYCG	1 cut(s)	770
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 98, 131, 140, 537, 750
BstSCI	CCNGG	2 cut(s)	116, 134
BstSFI	CTRYAG	1 cut(s)	587
BstSNI	TACGTA	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	130, 133
BstX2I	RGATCY	3 cut(s)	602, 671, 682
BstYI	RGATCY	3 cut(s)	602, 671, 682
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	125, 842
BsuTUI	ATCGAT	1 cut(s)	366
BtrI	CACGTC	2 cut(s)	75, 636
Cac8I	GCNNGC	1 cut(s)	755
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	551, 707
CspAI	ACCGGT	1 cut(s)	275
CviQI	GTAC	2 cut(s)	551, 707
DdeI	CTNAG	2 cut(s)	33, 666
DpnI	GATC	6 cut(s)	229, 480, 604, 673, 684, 769
DpnII	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	255
Eco105I	TACGTA	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	836
Eco81I	CCTNAGG	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	257
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	7 cut(s)	93, 96, 99, 144, 147, 218, 314
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	7 cut(s)	93, 96, 99, 144, 147, 218, 314
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	7 cut(s)	93, 96, 99, 144, 147, 218, 314
HaeIII	GGCC	2 cut(s)	125, 842
HapII	CCGG	3 cut(s)	117, 135, 276
HhaI	GCGC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	266, 305, 569
HpaII	CCGG	3 cut(s)	117, 135, 276
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	526, 633
Hpy188I	TCNGA	4 cut(s)	240, 451, 607, 855
Hpy188III	TCNNGA	1 cut(s)	776
Hpy8I	GTNNAC	2 cut(s)	526, 633
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	4 cut(s)	31, 205, 300, 860
HpyCH4III	ACNGT	2 cut(s)	109, 508
HpyCH4IV	ACGT	3 cut(s)	74, 553, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 98, 131, 140, 537, 750
HpyF3I	CTNAG	2 cut(s)	33, 666
HpySE526I	ACGT	3 cut(s)	74, 553, 635
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
LmnI	GCTCC	4 cut(s)	164, 260, 762, 796
LpnPI	CCDG	8 cut(s)	130, 148, 217, 289, 305, 470, 761, 773
Lsp1109I	GCAGC	2 cut(s)	130, 133
MaeII	ACGT	3 cut(s)	74, 553, 635
MaeIII	GTNAC	2 cut(s)	75, 103
MalI	GATC	6 cut(s)	229, 480, 604, 673, 684, 769
MboI	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
MboII	GAAGA	2 cut(s)	370, 833
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	3 cut(s)	602, 671, 682
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	7 cut(s)	190, 324, 412, 437, 617, 641, 720
MlyI	GAGTC	2 cut(s)	314, 578
MnlI	CCTC	6 cut(s)	160, 559, 593, 727, 787, 853
MspI	CCGG	3 cut(s)	117, 135, 276
MspR9I	CCNGG	2 cut(s)	118, 136
MunI	CAATTG	1 cut(s)	720
MwoI	GCNNNNNNNGC	6 cut(s)	43, 98, 131, 140, 537, 750
NciI	CCSGG	2 cut(s)	118, 136
NdeII	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
NlaIV	GGNNCC	2 cut(s)	604, 798
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	75, 103
NspV	TTCGAA	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	7 cut(s)	94, 97, 100, 145, 148, 219, 315
Ple19I	CGATCG	1 cut(s)	770
PleI	GAGTC	2 cut(s)	313, 577
PpsI	GAGTC	2 cut(s)	313, 577
Ppu21I	YACGTR	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	604, 798
PsuI	RGATCY	3 cut(s)	602, 671, 682
PvuI	CGATCG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	552, 708
RsaNI	GTAC	2 cut(s)	551, 707
SacI	GAGCTC	1 cut(s)	257
SatI	GCNGC	7 cut(s)	93, 96, 99, 144, 147, 218, 314
Sau3AI	GATC	6 cut(s)	227, 478, 602, 671, 682, 767
SchI	GAGTC	2 cut(s)	314, 578
ScrFI	CCNGG	2 cut(s)	118, 136
SduI	GDGCHC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	587
SfuI	TTCGAA	1 cut(s)	712
SmlI	CTYRAG	2 cut(s)	455, 688
SmoI	CTYRAG	2 cut(s)	455, 688
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	7 cut(s)	190, 324, 412, 437, 617, 641, 720
SsiI	CCGC	9 cut(s)	13, 69, 93, 96, 99, 218, 302, 313, 334
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	116, 134
TaaI	ACNGT	2 cut(s)	109, 508
TaiI	ACGT	3 cut(s)	77, 556, 638
TaqI	TCGA	3 cut(s)	264, 366, 712
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	7 cut(s)	190, 324, 412, 437, 617, 641, 720
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	5 cut(s)	95, 98, 101, 220, 316
TfiI	GAWTC	1 cut(s)	266
TseFI	GTSAC	2 cut(s)	75, 103
TseI	GCWGC	2 cut(s)	143, 146
Tsp45I	GTSAC	2 cut(s)	75, 103
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	4 cut(s)	247, 283, 433, 741
XapI	RAATTY	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.