Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

19254294 .. 19256764

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAAACCCACTCCCACTCCCCCTTCCTCCGCCACGCCACGTCCCTTCTCCGCTGCCGCCGCCTTAACTATCGCCGCAGGTGCGGCCGCATTCGCCGGAGTCGCTGCCGTCACGCACGCTAGCTCCTCTGCGGACCCGACGCGCCCATTTCTCCACAACGCGCTCAACTTGCTCTTGGCCAATCGTTCGCTGCCGCCTTGGGGTTCGCTGTCCCTGAACGACACTCCGGCCTCCGTCGTTGATTCCAAGAGCGGCGTGTCGTTTCCGTCTGTCCTGGCCGGGACTCGGCGGCTTCTGGGTATTGGGTTGAGGAGAAAACGCATACTGGGGTTGAAGAACATCGATGTTTATGCATATGGTATTTATGCTGATGATAAAGACGTAAAGAAATTGCTAAGCGAAAAATATGGAAAATTGTCCCTTTCTGAACTCCAGGAAAACAAGGAGTATAATGATGTGCTGCTGGAAACTGATATAGGGGTGACTGTTAGACTTCAAATAGTTTATGGTAAATTGAGCATTGGTTCTGTACGTAGTGCTTTTGAGGAGTCTGTAGGAACCAGACTTCAGAAGTTTGGGGGATCAGATAATCAAGAATTGCTACAGAGGTTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGACCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGATGGAAATGATGTAGGAAGTATCCAGAGCAAAGTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAGCCATTTGATAAACAAGCCAAAGAAGATGTGAAGCTCAATTTGGCCTCTGTCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

293

Amino Acids

31.66

Weight (kDa)

9.01

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	110 - 282	1.7e-12	Chalcone isomerase like
Chalcone_3	PF16036	160 - 280	6.7e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	2 cut(s)	181, 200
AclWI	GGATC	2 cut(s)	628, 697
AcoI	YGGCCR	3 cut(s)	123, 216, 315
AcuI	CTGAAG	2 cut(s)	590, 854
AfaI	GTAC	2 cut(s)	570, 726
AfiI	CCNNNNNNNGG	3 cut(s)	239, 324, 709
AgsI	TTSAA	3 cut(s)	373, 536, 664
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	312, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
AluBI	AGCT	2 cut(s)	162, 850
AluI	AGCT	2 cut(s)	162, 850
AlwI	GGATC	2 cut(s)	628, 697
AoxI	GGCC	5 cut(s)	123, 216, 267, 315, 858
ApeKI	GCWGC	4 cut(s)	92, 143, 229, 499
AspLEI	GCGC	2 cut(s)	183, 202
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	2 cut(s)	319, 717
AsuHPI	GGTGA	2 cut(s)	532, 821
AsuII	TTCGAA	1 cut(s)	730
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	218
BauI	CACGAG	1 cut(s)	684
BbvI	GCAGC	4 cut(s)	79, 130, 216, 486
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	314, 473
BciVI	GTATCC	1 cut(s)	773
BcnI	CCSGG	2 cut(s)	319, 717
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	591, 641
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	773
BlpI	GCTNAGC	1 cut(s)	434
Bme1390I	CCNGG	4 cut(s)	314, 319, 473, 717
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	4 cut(s)	174, 598, 714, 816
BmrFI	CCNGG	4 cut(s)	314, 319, 473, 717
BmrI	ACTGGG	1 cut(s)	374
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	1 cut(s)	730
BpuMI	CCSGG	2 cut(s)	319, 717
Bsa29I	ATCGAT	2 cut(s)	381, 788
BsaAI	YACGTR	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 146, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 324, 709
Bse1I	ACTGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	314, 473
BseCI	ATCGAT	2 cut(s)	381, 788
BseDI	CCNNGG	1 cut(s)	236
BseLI	CCNNNNNNNGG	3 cut(s)	239, 324, 709
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	4 cut(s)	154, 364, 599, 827
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	79, 130, 216, 486
Bsh1236I	CGCG	2 cut(s)	181, 200
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	5 cut(s)	125, 218, 269, 317, 860
BshVI	ATCGAT	2 cut(s)	381, 788
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	4 cut(s)	135, 266, 318, 716
BslFI	GGGAC	4 cut(s)	66, 235, 334, 442
BslI	CCNNNNNNNGG	3 cut(s)	239, 324, 709
BsmFI	GGGAC	4 cut(s)	66, 235, 334, 442
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	125, 218, 269, 317, 860
Bsp119I	TTCGAA	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	620, 689
Bsp1720I	GCTNAGC	1 cut(s)	434
BspANI	GGCC	5 cut(s)	125, 218, 269, 317, 860
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	2 cut(s)	381, 788
BspFNI	CGCG	2 cut(s)	181, 200
BspLI	GGNNCC	4 cut(s)	174, 598, 714, 816
BspMI	ACCTGC	1 cut(s)	107
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	628, 697
BspT104I	TTCGAA	1 cut(s)	730
BsrBI	CCGCTC	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	620, 689
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	314, 473
Bst4CI	ACNGT	1 cut(s)	526
BstBAI	YACGTR	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	156, 160
BstDEI	CTNAG	2 cut(s)	33, 434
BstFNI	CGCG	2 cut(s)	181, 200
BstHHI	GCGC	2 cut(s)	183, 202
BstKTI	GATC	2 cut(s)	623, 692
BstMBI	GATC	2 cut(s)	620, 689
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 119, 122, 131, 140, 208
BstNI	CCWGG	2 cut(s)	314, 473
BstSCI	CCNGG	4 cut(s)	312, 317, 471, 715
BstSFI	CTRYAG	2 cut(s)	591, 641
BstSNI	TACGTA	1 cut(s)	572
BstUI	CGCG	2 cut(s)	181, 200
BstV1I	GCAGC	4 cut(s)	79, 130, 216, 486
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BstZI	CGGCCG	1 cut(s)	123
Bsu15I	ATCGAT	2 cut(s)	381, 788
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	5 cut(s)	125, 218, 269, 317, 860
BsuTUI	ATCGAT	2 cut(s)	381, 788
BtrI	CACGTC	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	156, 160
CciNI	GCGGCCGC	1 cut(s)	123
CfoI	GCGC	2 cut(s)	183, 202
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	2 cut(s)	381, 788
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	569, 725
CviQI	GTAC	2 cut(s)	569, 725
DdeI	CTNAG	2 cut(s)	33, 434
DpnI	GATC	2 cut(s)	622, 691
DpnII	GATC	2 cut(s)	620, 689
EaeI	YGGCCR	3 cut(s)	123, 216, 315
EagI	CGGCCG	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	2 cut(s)	590, 854
EcoRII	CCWGG	2 cut(s)	312, 471
EcoT14I	CCWWGG	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	236
FaqI	GGGAC	4 cut(s)	66, 235, 334, 442
FauNDI	CATATG	1 cut(s)	394
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	2 cut(s)	182, 201
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	5 cut(s)	125, 218, 269, 317, 860
HapII	CCGG	4 cut(s)	135, 266, 318, 716
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	183, 202
Hin6I	GCGC	2 cut(s)	181, 200
HinP1I	GCGC	2 cut(s)	181, 200
HinfI	GANTC	5 cut(s)	138, 281, 322, 587, 790
HpaII	CCGG	4 cut(s)	135, 266, 318, 716
HphI	GGTGA	2 cut(s)	532, 821
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	3 cut(s)	466, 609, 625
Hpy188III	TCNNGA	4 cut(s)	632, 766, 794, 872
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	2 cut(s)	181, 278
HpyAV	CCTTC	4 cut(s)	31, 72, 94, 878
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	79, 420, 571
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 119, 122, 131, 140, 208
HpyF3I	CTNAG	2 cut(s)	33, 434
HpySE526I	ACGT	3 cut(s)	79, 420, 571
HspAI	GCGC	2 cut(s)	181, 200
Kzo9I	GATC	2 cut(s)	620, 689
LmnI	GCTCC	2 cut(s)	167, 814
Lsp1109I	GCAGC	4 cut(s)	79, 130, 216, 486
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	3 cut(s)	79, 420, 571
MaeIII	GTNAC	2 cut(s)	148, 520
MalI	GATC	2 cut(s)	622, 691
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	2 cut(s)	620, 689
MboII	GAAGA	2 cut(s)	385, 851
MflI	RGATCY	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	7 cut(s)	428, 452, 551, 635, 659, 672, 853
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	3 cut(s)	147, 316, 596
MnlI	CCTC	9 cut(s)	76, 175, 280, 342, 577, 639, 680, 805, 871
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	104, 675
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	4 cut(s)	135, 266, 318, 716
MspR9I	CCNGG	4 cut(s)	314, 319, 473, 717
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	2 cut(s)	314, 473
MvnI	CGCG	2 cut(s)	181, 200
MwoI	GCNNNNNNNGC	6 cut(s)	98, 119, 122, 131, 140, 208
NciI	CCSGG	2 cut(s)	319, 717
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	2 cut(s)	620, 689
NheI	GCTAGC	1 cut(s)	158
NlaIV	GGNNCC	4 cut(s)	174, 598, 714, 816
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	148, 520
NotI	GCGGCCGC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	394
NspV	TTCGAA	1 cut(s)	730
PaqCI	CACCTGC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	281, 790
PfoI	TCCNGGA	1 cut(s)	471
PleI	GAGTC	3 cut(s)	146, 316, 595
PpsI	GAGTC	3 cut(s)	146, 316, 595
Ppu21I	YACGTR	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	312, 471
PspGI	CCWGG	2 cut(s)	312, 471
PspN4I	GGNNCC	4 cut(s)	174, 598, 714, 816
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	2 cut(s)	570, 726
RsaNI	GTAC	2 cut(s)	569, 725
SaqAI	TTAA	2 cut(s)	104, 675
Sau3AI	GATC	2 cut(s)	620, 689
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	3 cut(s)	147, 316, 596
ScrFI	CCNGG	4 cut(s)	314, 319, 473, 717
SetI	ASST	9 cut(s)	82, 121, 164, 423, 574, 650, 705, 811, 852
SfcI	CTRYAG	2 cut(s)	591, 641
SfuI	TTCGAA	1 cut(s)	730
SinI	GGWCC	1 cut(s)	172
SnaBI	TACGTA	1 cut(s)	572
Sse9I	AATT	7 cut(s)	428, 452, 551, 635, 659, 672, 853
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	4 cut(s)	312, 317, 471, 715
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	82, 423, 574
TaqI	TCGA	3 cut(s)	381, 730, 788
TasI	AATT	7 cut(s)	428, 452, 551, 635, 659, 672, 853
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	8 cut(s)	98, 101, 116, 125, 128, 235, 294, 331
TfiI	GAWTC	2 cut(s)	281, 790
Tru1I	TTAA	2 cut(s)	104, 675
Tru9I	TTAA	2 cut(s)	104, 675
TseFI	GTSAC	2 cut(s)	148, 520
TseI	GCWGC	4 cut(s)	92, 143, 229, 499
Tsp45I	GTSAC	2 cut(s)	148, 520
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	2 cut(s)	262, 294
VpaK11BI	GGWCC	1 cut(s)	172
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.