Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

21068787 .. 21069296

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGTCCTTCCGCTTCCCCTTCTCGTTTCCTCAGCGCCAAAAGCACACTCCTCCCATCTACTCCTTCTCCTCCTCTGCCACGTCGCGTCCCTTCTTTGCCACCACCGCCGCCGTATACTTCGCCGCTGGTGCCGCATCAGTCGCCGGAGTGGCTGCTGCCACCCACAACTCCACAAACCAAGCACACCCATTTCTCCAAAACGCACTGAATCTCTTCTTTGCCAATCGCTCTCTGCCACTTTGGAGTTCGCTCTCTCTAAACTACACTTCGAGCTCCGTCGTTGATTCCAAGACCCAATTGCAGTTCTTCAAGAAATTCAAGCCTTCTTTGGGCATTCTTGGCGTCTTTTTGGTCACTCTTCTCTCTTCATCAGCCGCTTCTCCTGCTTGGATTACAATACAGTTCGTAGCGGGATTCGTTCTCGTGGGGTTGCCTTGCTGGGTTTTAGATGATTTATGTGTTAATGAGAACGAACTGTGTGCCATCTGCTCCAACCCAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

170

Amino Acids

18.31

Weight (kDa)

9.42

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	88
AciI	CCGC	7 cut(s)	13, 108, 111, 126, 135, 378, 413
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	313, 322
AjiI	CACGTC	1 cut(s)	84
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	155, 158
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	142, 145
BccI	CCATC	2 cut(s)	65, 494
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BfoI	RGCGCY	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	6 cut(s)	111, 126, 135, 156, 159, 378
BlsI	GCNGC	6 cut(s)	112, 127, 136, 157, 160, 379
BmgBI	CACGTC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	42, 61, 64
BseXI	GCAGC	2 cut(s)	142, 145
BseYI	CCCAGC	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	278
BspACI	CCGC	7 cut(s)	13, 108, 111, 126, 135, 378, 413
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	131
BssNAI	GTATAC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	425
Bst1107I	GTATAC	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	405, 480
Bst6I	CTCTTC	3 cut(s)	221, 366, 373
BstACI	GRCGYC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	8 cut(s)	43, 107, 131, 134, 143, 152, 342, 386
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	142, 145
BstZ17I	GTATAC	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	39
CseI	GACGC	2 cut(s)	77, 334
CviJI	RGCY	4 cut(s)	155, 276, 325, 377
CviKI_1	RGCY	4 cut(s)	155, 276, 325, 377
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	221, 366, 373
EarI	CTCTTC	3 cut(s)	221, 366, 373
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	278
FaiI	YATR	2 cut(s)	118, 460
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	111, 126, 135, 156, 159, 378
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	6 cut(s)	111, 126, 135, 156, 159, 378
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	6 cut(s)	111, 126, 135, 156, 159, 378
GsaI	CCCAGC	1 cut(s)	445
HaeII	RGCGCY	1 cut(s)	40
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	77, 334
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	3 cut(s)	211, 287, 417
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	88, 284
HpyAV	CCTTC	5 cut(s)	19, 31, 76, 103, 336
HpyCH4III	ACNGT	2 cut(s)	405, 480
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	8 cut(s)	43, 107, 131, 134, 143, 152, 342, 386
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	281, 497
LpnPI	CCDG	4 cut(s)	114, 160, 399, 427
Lsp1109I	GCAGC	2 cut(s)	142, 145
LweI	GCATC	1 cut(s)	146
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	355
MboII	GAAGA	4 cut(s)	208, 301, 353, 360
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	299, 317
MnlI	CCTC	4 cut(s)	42, 63, 82, 85
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	8 cut(s)	43, 107, 131, 134, 143, 152, 342, 386
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	355
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	211, 287, 417
PkrI	GCNGC	6 cut(s)	112, 127, 136, 157, 160, 379
Psp124BI	GAGCTC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	6 cut(s)	111, 126, 135, 156, 159, 378
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	2 cut(s)	86, 278
SfaNI	GCATC	1 cut(s)	146
Sse9I	AATT	2 cut(s)	299, 317
SsiI	CCGC	7 cut(s)	13, 108, 111, 126, 135, 378, 413
SstI	GAGCTC	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	405, 480
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	299, 317
TauI	GCSGC	4 cut(s)	113, 128, 137, 380
TfiI	GAWTC	3 cut(s)	211, 287, 417
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	155, 158
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.