Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Forward (+)

56737280 .. 56739573

Gene Structure 2294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCAGCCACCCCTTCATCCGCCACCTCACGTCCCTTCACCGCCGCCGTAACCCTCGCCGCCGGCGCTGCCGCATTCGCCGGAGTGGCGGCCGTCACGCACACTAACCCCACGAACCCATTTCTCCAGAACGCACTGAATTTCTTCCTCGCCGATCGCTCGCTGCCGCCGCTTTGGGGCTCGCTGTCCCTGAACGACACTCCGGCCTCCGTCGTCGATTCCAAGACGGGGGTGTCGTTTCCGTCGGTGCTGGACGGGACTCGGCGACTTCTGGGAATTGGGTTGAGGAGAAAACGCGTGCTGGGGTTGAAGAACATCGATGTGTATGCATATGGTATTTATGCTGATGATATAGACGTAAAGAAATTACTCAGCAAAAAATATGGGAAATTGTCCCTTTCTGAACTCAAGCAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAAATTGAGCATCGGTTCTGTACGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGGTCAGATAATCAAGAATTGCTACAAAGATTCACTTCTCAATTCAAAGATGAAATTAAAATACCACGAGGATCTATAATAGATCTGTCAAGGGAACCGGGCTATGTACTTCGAACAACCATTGACGGAAATGATGTAGGAAGCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCCTCTGTCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

287

Amino Acids

31.34

Weight (kDa)

9.01

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	105 - 277	7.1e-12	Chalcone isomerase like
Chalcone_3	PF16036	155 - 275	9e-09	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	280
AccII	CGCG	1 cut(s)	345
AciI	CCGC	9 cut(s)	13, 69, 90, 93, 108, 120, 137, 215, 218
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	575, 839
AfaI	GTAC	3 cut(s)	483, 555, 711
AfiI	CCNNNNNNNGG	2 cut(s)	224, 276
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	358, 521, 649
AjiI	CACGTC	1 cut(s)	80
AluBI	AGCT	1 cut(s)	835
AluI	AGCT	1 cut(s)	835
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	3 cut(s)	138, 252, 843
ApeKI	GCWGC	2 cut(s)	116, 211
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	79, 806
AsuII	TTCGAA	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	103, 198
BceAI	ACGGC	2 cut(s)	80, 125
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BcnI	CCSGG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	8 cut(s)	93, 108, 117, 120, 138, 212, 215, 218
BlsI	GCNGC	8 cut(s)	94, 109, 118, 121, 139, 213, 216, 219
Bme1390I	CCNGG	1 cut(s)	702
BmgBI	CACGTC	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	583, 699, 801
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	2 cut(s)	552, 756
BpmI	CTGGAG	2 cut(s)	36, 158
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	702
Bsa29I	ATCGAT	2 cut(s)	366, 773
BsaAI	YACGTR	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 276
Bse118I	RCCGGY	1 cut(s)	110
BseCI	ATCGAT	2 cut(s)	366, 773
BseGI	GGATG	2 cut(s)	65, 747
BseLI	CCNNNNNNNGG	2 cut(s)	224, 276
BseMII	CTCAG	2 cut(s)	47, 433
BseRI	GAGGAG	2 cut(s)	349, 584
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	103, 198
BseYI	CCCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	2 cut(s)	141, 205
BshFI	GGCC	3 cut(s)	140, 254, 845
BshVI	ATCGAT	2 cut(s)	366, 773
BsiEI	CGRYCG	2 cut(s)	141, 205
BsiSI	CCGG	4 cut(s)	111, 129, 251, 701
BslFI	GGGAC	4 cut(s)	66, 220, 319, 427
BslI	CCNNNNNNNGG	2 cut(s)	224, 276
BsmFI	GGGAC	4 cut(s)	66, 220, 319, 427
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	140, 254, 845
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	202, 674, 685
BspACI	CCGC	9 cut(s)	13, 69, 90, 93, 108, 120, 137, 215, 218
BspANI	GGCC	3 cut(s)	140, 254, 845
BspCNI	CTCAG	2 cut(s)	46, 432
BspDI	ATCGAT	2 cut(s)	366, 773
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	583, 699, 801
BspPI	GGATC	1 cut(s)	682
BspT104I	TTCGAA	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	3 cut(s)	202, 674, 685
BssSI	CACGAG	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	4 cut(s)	112, 209, 230, 347
BstDEI	CTNAG	2 cut(s)	33, 419
BstF5I	GGATG	2 cut(s)	65, 747
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	205, 677, 688
BstMBI	GATC	3 cut(s)	202, 674, 685
BstMCI	CGRYCG	2 cut(s)	141, 205
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 134, 217, 540, 753
BstSCI	CCNGG	1 cut(s)	700
BstSNI	TACGTA	1 cut(s)	557
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	103, 198
BstX2I	RGATCY	2 cut(s)	674, 685
BstYI	RGATCY	2 cut(s)	674, 685
BstZI	CGGCCG	1 cut(s)	138
Bsu15I	ATCGAT	2 cut(s)	366, 773
BsuRI	GGCC	3 cut(s)	140, 254, 845
BsuTUI	ATCGAT	2 cut(s)	366, 773
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	65, 747
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	4 cut(s)	112, 209, 230, 347
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
ClaI	ATCGAT	2 cut(s)	366, 773
Csp6I	GTAC	3 cut(s)	482, 554, 710
CviJI	RGCY	9 cut(s)	37, 56, 140, 228, 254, 705, 818, 835, 845
CviKI_1	RGCY	9 cut(s)	37, 56, 140, 228, 254, 705, 818, 835, 845
CviQI	GTAC	3 cut(s)	482, 554, 710
DdeI	CTNAG	2 cut(s)	33, 419
DpnI	GATC	3 cut(s)	204, 676, 687
DpnII	GATC	3 cut(s)	202, 674, 685
DrdI	GACNNNNNNGTC	1 cut(s)	280
DseDI	GACNNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	575, 839
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	230
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	4 cut(s)	66, 220, 319, 427
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	93, 108, 117, 120, 138, 212, 215, 218
FokI	GGATG	2 cut(s)	52, 734
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	8 cut(s)	93, 108, 117, 120, 138, 212, 215, 218
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	8 cut(s)	93, 108, 117, 120, 138, 212, 215, 218
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	2 cut(s)	36, 158
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	140, 254, 845
HapII	CCGG	4 cut(s)	111, 129, 251, 701
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	5 cut(s)	266, 307, 572, 633, 775
HpaII	CCGG	4 cut(s)	111, 129, 251, 701
HphI	GGTGA	2 cut(s)	79, 806
Hpy188I	TCNGA	3 cut(s)	451, 594, 610
Hpy188III	TCNNGA	4 cut(s)	175, 617, 779, 857
Hpy99I	CGWCG	3 cut(s)	263, 266, 295
HpyAV	CCTTC	4 cut(s)	31, 72, 94, 863
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	3 cut(s)	79, 405, 556
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 134, 217, 540, 753
HpyF3I	CTNAG	2 cut(s)	33, 419
HpySE526I	ACGT	3 cut(s)	79, 405, 556
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	202, 674, 685
Lsp1109I	GCAGC	2 cut(s)	103, 198
LweI	GCATC	2 cut(s)	552, 756
MaeII	ACGT	3 cut(s)	79, 405, 556
MaeIII	GTNAC	3 cut(s)	97, 142, 505
MalI	GATC	3 cut(s)	204, 676, 687
MboI	GATC	3 cut(s)	202, 674, 685
MboII	GAAGA	3 cut(s)	184, 370, 836
MflI	RGATCY	2 cut(s)	674, 685
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	9 cut(s)	187, 324, 413, 437, 536, 620, 644, 657, 838
MluI	ACGCGT	1 cut(s)	343
MlyI	GAGTC	2 cut(s)	301, 581
MnlI	CCTC	9 cut(s)	85, 113, 206, 265, 327, 562, 665, 790, 856
Mph1103I	ATGCAT	1 cut(s)	379
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	4 cut(s)	111, 129, 251, 701
MspR9I	CCNGG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	7 cut(s)	113, 116, 125, 134, 217, 540, 753
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	702
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	3 cut(s)	202, 674, 685
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	583, 699, 801
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	142, 505
NsiI	ATGCAT	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	266, 633, 775
PkrI	GCNGC	8 cut(s)	94, 109, 118, 121, 139, 213, 216, 219
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	301, 580
PpsI	GAGTC	2 cut(s)	301, 580
Ppu21I	YACGTR	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	583, 699, 801
PsuI	RGATCY	2 cut(s)	674, 685
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	483, 555, 711
RsaNI	GTAC	3 cut(s)	482, 554, 710
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	8 cut(s)	93, 108, 117, 120, 138, 212, 215, 218
Sau3AI	GATC	3 cut(s)	202, 674, 685
SchI	GAGTC	2 cut(s)	301, 581
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	7 cut(s)	77, 82, 408, 505, 559, 796, 837
SfaNI	GCATC	2 cut(s)	552, 756
SfuI	TTCGAA	1 cut(s)	715
SgrAI	CRCCGGYG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SnaBI	TACGTA	1 cut(s)	557
Sse9I	AATT	9 cut(s)	187, 324, 413, 437, 536, 620, 644, 657, 838
SsiI	CCGC	9 cut(s)	13, 69, 90, 93, 108, 120, 137, 215, 218
StyD4I	CCNGG	1 cut(s)	700
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	3 cut(s)	82, 408, 559
TaqI	TCGA	4 cut(s)	264, 366, 715, 773
TasI	AATT	9 cut(s)	187, 324, 413, 437, 536, 620, 644, 657, 838
TatI	WGTACW	2 cut(s)	481, 709
TauI	GCSGC	6 cut(s)	95, 110, 122, 140, 217, 220
TfiI	GAWTC	3 cut(s)	266, 633, 775
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	142, 505
TseI	GCWGC	2 cut(s)	116, 211
Tsp45I	GTSAC	2 cut(s)	142, 505
TspDTI	ATGAA	2 cut(s)	54, 669
TspGWI	ACGGA	3 cut(s)	247, 279, 744
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.