Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014112

Physical Location & Seq

Genomic Coordinates Reverse (-)

15832796 .. 15835050

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCACGTGCCAACCTCCCTAGTTTTGTGCTACAACACAACCGAATCAAAGAAACCACTGGCTTCACGTTTGGAGCTGAAACCATGGTGTCATTCCGCTTCCCCTTCTCGTTTTCTCAGCCCCCAAATCCCACTCCCGCCACCCCTTCATCCGCCACCTCACGCCCCTTCACCGCCGCCGTAACCCTCGCCGCCGGCGCTGCCGCATTCGAAAACAAGGAGTATAATGATGTACTGCTGGAAACTGATATAGGTGTGACTGTTAGACTTCAAATAGTTTATGGCAAATTGAGCATCGGTTCTGTCCGTAGTGCTTTTGAGGAGTCGGTAGGAACCAGACTTCAGAAGTTTGGGGGATCAGATAATGAAGAATTACTACAAAGGTATACCATTATCTTTGTTGACGGAAATGATGTAGGAAGCATCCAAAGCAAACTCCTGTGTAAATCGATTCTGGATTTGTATATAGGTGAGGAACCATTTGATAAACAAGCCAAAGAAGATGTCAAGCTCAATTTGGCCTCTGTCCTTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0019752 GO:0031406 GO:0031967 GO:0031975 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

180

Amino Acids

19.59

Weight (kDa)

5.13

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63170
fragaria_vesca	FvH4_2g23480
malus_domestica	MD03G1263700.v1.1
prunus_persica	Prupe.8G240000_v2.0.a1 Prupe.8G240100_v2.0.a1 Prupe.8G240100_v2.0.a1
pyrus_communis	pycom03g21140
rosa_chinensis	RchiOBHm_Chr6g0290951
rosa_laevigata	RLG00000012162
rosa_multiflora	Rmu_sc0001577.1_g000014
rosa_roxburghii	Rroxscaffold_7G00176520
rosa_rugosa	Rorug06G0216400
rosa_samantha	Rh6AG326300 Rh6BG333900 Rh6CG340000 Rh6DG327200
rosa_wichuraiana	Rw6G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	7 cut(s)	97, 138, 153, 174, 177, 192, 204
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	326, 515
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	77, 511
AluI	AGCT	2 cut(s)	77, 511
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	163, 482
AsuII	TTCGAA	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbrPI	CACGTG	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	4 cut(s)	177, 192, 201, 204
BlsI	GCNGC	4 cut(s)	178, 193, 202, 205
BmiI	GGNNCC	2 cut(s)	334, 477
BmsI	GCATC	2 cut(s)	303, 432
Bpu14I	TTCGAA	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	149, 423
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	356
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	7 cut(s)	97, 138, 153, 174, 177, 192, 204
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	334, 477
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	356
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	149, 423
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 200, 291, 429
BstV1I	GCAGC	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	521
BsuTUI	ATCGAT	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	149, 423
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	6 cut(s)	63, 77, 121, 494, 511, 521
CviKI_1	RGCY	6 cut(s)	63, 77, 121, 494, 511, 521
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	326, 515
Eco72I	CACGTG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	88
FaiI	YATR	7 cut(s)	86, 225, 251, 282, 387, 465, 467
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	177, 192, 201, 204
FokI	GGATG	2 cut(s)	136, 410
Fsp4HI	GCNGC	4 cut(s)	177, 192, 201, 204
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	4 cut(s)	177, 192, 201, 204
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	45, 323, 451
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	163, 482
Hpy166II	GTNNAC	2 cut(s)	387, 403
Hpy188I	TCNGA	2 cut(s)	345, 361
Hpy188III	TCNNGA	2 cut(s)	455, 533
Hpy8I	GTNNAC	2 cut(s)	387, 403
HpyAV	CCTTC	4 cut(s)	115, 156, 178, 539
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	2 cut(s)	7, 68
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 200, 291, 429
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	7, 68
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	7 cut(s)	45, 208, 224, 349, 440, 452, 518
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	303, 432
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	7, 68
MaeIII	GTNAC	2 cut(s)	181, 256
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	2 cut(s)	380, 512
MluCI	AATT	3 cut(s)	287, 371, 514
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	26, 169, 197, 313, 466, 532
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MspI	CCGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	197, 200, 291, 429
NaeI	GCCGGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	356
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	334, 477
NmuCI	GTSAC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	45, 451
PkrI	GCNGC	4 cut(s)	178, 193, 202, 205
PleI	GAGTC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	334, 477
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SatI	GCNGC	4 cut(s)	177, 192, 201, 204
Sau3AI	GATC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	332
SetI	ASST	9 cut(s)	10, 18, 71, 79, 161, 256, 386, 472, 513
SfaNI	GCATC	2 cut(s)	303, 432
SfuI	TTCGAA	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	287, 371, 514
SsiI	CCGC	7 cut(s)	97, 138, 153, 174, 177, 192, 204
SspMI	CTAG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	2 cut(s)	10, 71
TaqI	TCGA	2 cut(s)	210, 449
TasI	AATT	3 cut(s)	287, 371, 514
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	3 cut(s)	179, 194, 206
TfiI	GAWTC	2 cut(s)	45, 451
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	138, 381
TspGWI	ACGGA	2 cut(s)	296, 420
TspRI	CASTG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.