AT3G63420

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010807
Physical Location & Seq
Forward (+)
23417249 .. 23419024
1776 bp
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UTR
Exon/CDS
Intron
AT3G63420.3

Sequence Viewer

Length: 297 bp
ATGCGAGAGGAAACTGTGGTTTACGAGCAGGAGGAGTCTGTTTCTCACGGCGGGGGCAAGCACAGGATCCTTGCAGAGCTTGCCCGCGTTGAACAGGAAGTCGCTTTCTTGGAGAAAGAGTTGAAGGAGGTCGAGAACACAGATATTGTATCAACCGTGTGTGAGGAGCTGCTATCTGTCATCGAGAAAGGACCCGATCCTCTGTTGCCACTAACCAATGGACCTTTGAACTTAGGATGGGACCGGTGGTTTGAAGGACCAAATGGAGGAGAAGGCTGCAGATGCTTAATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010540 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

98

Amino Acids

10.95

Weight (kDa)

4.49

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 66 - 138 1.7e-14 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63420 AT3G63420 AT3G63420
fragaria_vesca FvH4_2g22840
malus_domestica MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica Prupe.8G233500_v2.0.a1
pyrus_communis pycom03g20330 pycom11g24520
rosa_chinensis RchiOBHm_Chr6g0289751
rosa_laevigata RLG00000012269
rosa_multiflora Rmu_sc0005640.1_g000016
rosa_roxburghii Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa Rorug06G0206300
rosa_samantha Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana Rw6G027430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 2 cut(s) 51, 85
AclWI GGATC 3 cut(s) 61, 74, 191
AfiI CCNNNNNNNGG 1 cut(s) 266
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 4 cut(s) 92, 124, 229, 254
AluBI AGCT 2 cut(s) 79, 169
AluI AGCT 2 cut(s) 79, 169
AlwI GGATC 3 cut(s) 61, 74, 191
ApeKI GCWGC 2 cut(s) 169, 276
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AsiGI ACCGGT 1 cut(s) 243
AspS9I GGNCC 4 cut(s) 191, 221, 241, 257
AvaII GGWCC 4 cut(s) 191, 221, 241, 257
BamHI GGATCC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 156, 263
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 170, 277
BlsI GCNGC 2 cut(s) 171, 278
Bme18I GGWCC 4 cut(s) 191, 221, 241, 257
BmgT120I GGNCC 4 cut(s) 191, 221, 241, 257
BmiI GGNNCC 3 cut(s) 68, 193, 242
BmsI GCATC 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 243
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 266
BseRI GAGGAG 3 cut(s) 47, 179, 282
BseXI GCAGC 2 cut(s) 156, 263
Bsh1236I CGCG 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 243
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 66, 196
BspACI CCGC 2 cut(s) 51, 85
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 68, 193, 242
BspMAI CTGCAG 1 cut(s) 281
BspPI GGATC 3 cut(s) 61, 74, 191
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssMI GATC 2 cut(s) 66, 196
Bst4CI ACNGT 2 cut(s) 16, 157
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 59, 81, 85
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 2 cut(s) 69, 199
BstMBI GATC 2 cut(s) 66, 196
BstMWI GCNNNNNNNGC 2 cut(s) 80, 282
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 156, 263
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsCI GGATG 1 cut(s) 242
Cac8I GCNNGC 3 cut(s) 59, 81, 85
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 4 cut(s) 191, 221, 241, 257
CspAI ACCGGT 1 cut(s) 243
CviJI RGCY 3 cut(s) 79, 169, 276
CviKI_1 RGCY 3 cut(s) 79, 169, 276
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 68, 198
DpnII GATC 2 cut(s) 66, 196
Eco47I GGWCC 4 cut(s) 191, 221, 241, 257
EcoO109I RGGNCCY 1 cut(s) 191
FaqI GGGAC 1 cut(s) 254
FauI CCCGC 2 cut(s) 44, 92
Fnu4HI GCNGC 2 cut(s) 170, 277
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 170, 277
GluI GCNGC 2 cut(s) 170, 277
HapII CCGG 1 cut(s) 244
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 133, 184
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 118, 248, 266
HpyCH4III ACNGT 2 cut(s) 16, 157
HpyCH4V TGCA 2 cut(s) 74, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 282
HpyF3I CTNAG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 66, 196
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 4 cut(s) 14, 49, 80, 257
Lsp1109I GCAGC 2 cut(s) 156, 263
LweI GCATC 1 cut(s) 272
MalI GATC 2 cut(s) 68, 198
MboI GATC 2 cut(s) 66, 196
MflI RGATCY 1 cut(s) 66
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 5 cut(s) 25, 121, 157, 210, 260
MseI TTAA 1 cut(s) 287
MspI CCGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 80, 282
NdeII GATC 2 cut(s) 66, 196
NlaIV GGNNCC 3 cut(s) 68, 193, 242
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 2 cut(s) 171, 278
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 68, 193, 242
PspPI GGNCC 4 cut(s) 191, 221, 241, 257
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 66
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 170, 277
Sau3AI GATC 2 cut(s) 66, 196
Sau96I GGNCC 4 cut(s) 191, 221, 241, 257
SchI GAGTC 1 cut(s) 44
SetI ASST 4 cut(s) 81, 132, 171, 226
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 4 cut(s) 191, 221, 241, 257
SsiI CCGC 2 cut(s) 51, 85
TaaI ACNGT 2 cut(s) 16, 157
TaqI TCGA 2 cut(s) 132, 183
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseI GCWGC 2 cut(s) 169, 276
VpaK11BI GGWCC 4 cut(s) 191, 221, 241, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.