FvH4_2g22840

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010807
Physical Location & Seq
Reverse (-)
18758042 .. 18759800
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22840.t1

Sequence Viewer

Length: 318 bp
ATGGCGTCCGATACGGCGTCGTCTGTGGACGAACAACAGGCACAGCTTGTCACTGCTACTTCAACTGACAACAGAGGACGGCATCGGATTCTTGCTGAACTCAACCGACTCGAACAAGAACTCAAATTCTTACAGGAAGAGGTGGGAGAACTTGAAAATACTGAAAACGTTTCCACCATATGTTCGGAATTGCTACCCTACATCGAAGGCAGGCCGGATCCTCTACTCCCAGTAACAAATGGACCTATAAATCTAATATGGGATCAATGGTTTGAAGGACCTCAAAATTCACAAAGTTGCAGTTGCTTGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

4.19

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 33 - 105 1.2e-11 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63420 AT3G63420 AT3G63420
fragaria_vesca FvH4_2g22840
malus_domestica MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica Prupe.8G233500_v2.0.a1
pyrus_communis pycom03g20330 pycom11g24520
rosa_chinensis RchiOBHm_Chr6g0289751
rosa_laevigata RLG00000012269
rosa_multiflora Rmu_sc0005640.1_g000016
rosa_roxburghii Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa Rorug06G0206300
rosa_samantha Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana Rw6G027430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 168
AclWI GGATC 3 cut(s) 212, 225, 270
AcsI RAATTY 2 cut(s) 125, 286
AcyI GRCGYC 2 cut(s) 5, 17
AgsI TTSAA 3 cut(s) 63, 155, 275
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AlwI GGATC 3 cut(s) 212, 225, 270
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 125, 286
AspS9I GGNCC 2 cut(s) 242, 278
AvaII GGWCC 2 cut(s) 242, 278
BamHI GGATCC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 30, 95
Bme18I GGWCC 2 cut(s) 242, 278
BmgT120I GGNCC 2 cut(s) 242, 278
BmiI GGNNCC 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 224
BsaHI GRCGYC 2 cut(s) 5, 17
Bse1I ACTGG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 230
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 217, 262
BspANI GGCC 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 3 cut(s) 212, 225, 270
BsrI ACTGG 1 cut(s) 230
BssMI GATC 2 cut(s) 217, 262
BssNI GRCGYC 2 cut(s) 5, 17
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 2 cut(s) 5, 17
BstC8I GCNNGC 1 cut(s) 212
BstKTI GATC 2 cut(s) 220, 265
BstMBI GATC 2 cut(s) 217, 262
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 242, 278
CseI GACGC 1 cut(s) 6
CviJI RGCY 2 cut(s) 46, 214
CviKI_1 RGCY 2 cut(s) 46, 214
DpnI GATC 2 cut(s) 219, 264
DpnII GATC 2 cut(s) 217, 262
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 242, 278
EcoO109I RGGNCCY 1 cut(s) 278
FaiI YATR 4 cut(s) 179, 181, 248, 259
FauNDI CATATG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 6
Hin1I GRCGYC 2 cut(s) 5, 17
HinfI GANTC 2 cut(s) 88, 108
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 10, 87, 187
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 200, 269
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 2 cut(s) 5, 17
Kzo9I GATC 2 cut(s) 217, 262
LpnPI CCDG 5 cut(s) 23, 119, 196, 228, 243
LweI GCATC 1 cut(s) 91
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 49, 232
MalI GATC 2 cut(s) 219, 264
MboI GATC 2 cut(s) 217, 262
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 217
MluCI AATT 3 cut(s) 125, 188, 286
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 4 cut(s) 68, 133, 231, 291
MspI CCGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 179
NdeII GATC 2 cut(s) 217, 262
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 88
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 278
Psp1406I AACGTT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 242, 278
PspPPI RGGWCCY 1 cut(s) 278
PsuI RGATCY 1 cut(s) 217
Sau3AI GATC 2 cut(s) 217, 262
Sau96I GGNCC 2 cut(s) 242, 278
SchI GAGTC 1 cut(s) 102
SetI ASST 5 cut(s) 48, 144, 171, 247, 283
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 2 cut(s) 242, 278
Sse9I AATT 3 cut(s) 125, 188, 286
TaaI ACNGT 1 cut(s) 315
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 111, 204
TasI AATT 3 cut(s) 125, 188, 286
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 242, 278
XapI RAATTY 2 cut(s) 125, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.