Rroxscaffold_7G00178090

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010807
Physical Location & Seq
Forward (+)
17790389 .. 17792665
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178090.1

Sequence Viewer

Length: 366 bp
ATGGCGTCCGATACGGCGTCGTCTGTGGACGAACAACAGGCACAGCTTGTCGCTGCTACGTCAACTGACAACAGAGGAAGGCATCGGGTTCTTGCCGAGCTCAACCGACTCGAACAAGAACTCAAATTCTTGCAGGGGTTTATACACAGACAGCACAAGGCCTTCTTTTGCACATTGTATATGGAAGAGTTGGGAGAGCTTGAACAAACTGAAAACGTTTCCACCATATGTTCTGAATTGCTGCCCTATACCGAAGGCCGGCCGGATCCTCTACTTCCACTAACAAATGGGCCTATAAATGTAATATGGGATCGATGGTTTGAAGGACCTCAAAACTCACAAAGTTGCAGTTGCTTGATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

121

Amino Acids

13.74

Weight (kDa)

4.72

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 62 - 121 7.3e-08 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63420 AT3G63420 AT3G63420
fragaria_vesca FvH4_2g22840
malus_domestica MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica Prupe.8G233500_v2.0.a1
pyrus_communis pycom03g20330 pycom11g24520
rosa_chinensis RchiOBHm_Chr6g0289751
rosa_laevigata RLG00000012269
rosa_multiflora Rmu_sc0005640.1_g000016
rosa_roxburghii Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa Rorug06G0206300
rosa_samantha Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana Rw6G027430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 216
AclWI GGATC 3 cut(s) 260, 273, 318
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 5, 17
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 203, 323
AluBI AGCT 3 cut(s) 46, 100, 199
AluI AGCT 3 cut(s) 46, 100, 199
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 3 cut(s) 260, 273, 318
AoxI GGCC 4 cut(s) 159, 256, 260, 290
ApeKI GCWGC 2 cut(s) 53, 241
ApoI RAATTY 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 290, 326
AvaII GGWCC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 40, 228
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 30
BisI GCNGC 2 cut(s) 54, 242
BlsI GCNGC 2 cut(s) 55, 243
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 290, 326
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 313
BsaHI GRCGYC 2 cut(s) 5, 17
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 258
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 40, 228
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 4 cut(s) 161, 258, 262, 292
BshVI ATCGAT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 259, 263
BslI CCNNNNNNNGG 1 cut(s) 258
BsnI GGCC 4 cut(s) 161, 258, 262, 292
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 265, 310
BspANI GGCC 4 cut(s) 161, 258, 262, 292
BspDI ATCGAT 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 260, 273, 318
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 2 cut(s) 265, 310
BssNI GRCGYC 2 cut(s) 5, 17
Bst4CI ACNGT 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 5, 17
BstC8I GCNNGC 1 cut(s) 260
BstKTI GATC 2 cut(s) 268, 313
BstMBI GATC 2 cut(s) 265, 310
BstMCI CGRYCG 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 40, 228
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZI CGGCCG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 313
BsuRI GGCC 4 cut(s) 161, 258, 262, 292
BsuTUI ATCGAT 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 290, 326
ClaI ATCGAT 1 cut(s) 313
CseI GACGC 1 cut(s) 6
CviJI RGCY 7 cut(s) 46, 100, 161, 199, 258, 262, 292
CviKI_1 RGCY 7 cut(s) 46, 100, 161, 199, 258, 262, 292
DpnI GATC 2 cut(s) 267, 312
DpnII GATC 2 cut(s) 265, 310
EaeI YGGCCR 1 cut(s) 260
EagI CGGCCG 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 102
FaiI YATR 8 cut(s) 143, 180, 182, 227, 229, 249, 296, 307
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FauNDI CATATG 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 54, 242
FriOI GRGCYC 1 cut(s) 102
FseI GGCCGGCC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 54, 242
GluI GCNGC 2 cut(s) 54, 242
HaeIII GGCC 4 cut(s) 161, 258, 262, 292
HapII CCGG 2 cut(s) 259, 263
HgaI GACGC 1 cut(s) 6
Hin1I GRCGYC 2 cut(s) 5, 17
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 1 cut(s) 108
HpaII CCGG 2 cut(s) 259, 263
Hpy166II GTNNAC 2 cut(s) 28, 63
Hpy188I TCNGA 2 cut(s) 10, 235
Hpy8I GTNNAC 2 cut(s) 28, 63
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 72, 172, 248, 317
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 2 cut(s) 59, 216
HpyCH4V TGCA 3 cut(s) 133, 171, 348
HpySE526I ACGT 2 cut(s) 59, 216
Hsp92I GRCGYC 2 cut(s) 5, 17
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Kzo9I GATC 2 cut(s) 265, 310
LpnPI CCDG 4 cut(s) 23, 119, 272, 276
Lsp1109I GCAGC 2 cut(s) 40, 228
LweI GCATC 1 cut(s) 91
MaeII ACGT 2 cut(s) 59, 216
MalI GATC 2 cut(s) 267, 312
MboI GATC 2 cut(s) 265, 310
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 125, 236
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 3 cut(s) 68, 279, 339
MroNI GCCGGC 1 cut(s) 258
MspI CCGG 2 cut(s) 259, 263
NaeI GCCGGC 1 cut(s) 260
NdeI CATATG 1 cut(s) 227
NdeII GATC 2 cut(s) 265, 310
NgoMIV GCCGGC 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 267
NmeAIII GCCGAG 1 cut(s) 121
PceI AGGCCT 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 55, 243
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 290, 326
PspPPI RGGWCCY 1 cut(s) 326
PsuI RGATCY 1 cut(s) 265
RigI GGCCGGCC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 2 cut(s) 54, 242
Sau3AI GATC 2 cut(s) 265, 310
Sau96I GGNCC 2 cut(s) 290, 326
SchI GAGTC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 102
SetI ASST 6 cut(s) 48, 62, 102, 201, 219, 331
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 326
Sse9I AATT 2 cut(s) 125, 236
SseBI AGGCCT 1 cut(s) 161
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 161
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 2 cut(s) 62, 219
TaqI TCGA 2 cut(s) 111, 313
TasI AATT 2 cut(s) 125, 236
TseI GCWGC 2 cut(s) 53, 241
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.