MD11G1277200.v1.1

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010807
Physical Location & Seq
Reverse (-)
39448864 .. 39451524
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1277200.v1.1.491

Sequence Viewer

Length: 348 bp
ATGGCGTCCGATACGGCGTCGTCGGTGGACGAACAGGCGCAGCAGCTGGATGTTCCGGGTGGTTTGGTCGGAGGAGGAGGAGGAGGAGGGTCCACTGATAAGAGAGGAAGGCATCGGATTCTCGCCGAACTCAGCCTCCTCGAACAAGAACTTAAGTTCTTGCAGGAGGAGTTGGGAGAGCTCGAAAGAACCGAAAATGTTTCAACCATTTGTTCAGAATTGCTTCCCTACGTCGAAGGCAGGTTGGATCCTCTACTCCCATTAACAAATGGACCTGTAAATCTGGTATGGGATCGATGGTTCGAAGGACCGCAGGATTCACAAAGTTGCAGCTGCTGGATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

116

Amino Acids

12.51

Weight (kDa)

4.27

Isoelectric Point (pI)

65.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 47 - 115 1.2e-12 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63420 AT3G63420 AT3G63420
fragaria_vesca FvH4_2g22840
malus_domestica MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica Prupe.8G233500_v2.0.a1
pyrus_communis pycom03g20330 pycom11g24520
rosa_chinensis RchiOBHm_Chr6g0289751
rosa_laevigata RLG00000012269
rosa_multiflora Rmu_sc0005640.1_g000016
rosa_roxburghii Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa Rorug06G0206300
rosa_samantha Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana Rw6G027430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 311
AclWI GGATC 3 cut(s) 242, 255, 300
AcyI GRCGYC 2 cut(s) 5, 17
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 204
AloI GAACNNNNNNTCC 4 cut(s) 120, 152, 284, 316
AluBI AGCT 3 cut(s) 46, 181, 333
AluI AGCT 3 cut(s) 46, 181, 333
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 3 cut(s) 242, 255, 300
AlwNI CAGNNNCTG 2 cut(s) 46, 336
ApeKI GCWGC 4 cut(s) 40, 43, 330, 333
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 3 cut(s) 90, 272, 308
AsuC2I CCSGG 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 3 cut(s) 90, 272, 308
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 52, 55, 320, 342
BccI CCATC 1 cut(s) 291
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 333
BcnI CCSGG 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 4 cut(s) 41, 44, 331, 334
BlsI GCNGC 4 cut(s) 42, 45, 332, 335
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 90, 272, 308
BmgT120I GGNCC 3 cut(s) 90, 272, 308
BmiI GGNNCC 2 cut(s) 91, 249
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 295
BsaHI GRCGYC 2 cut(s) 5, 17
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
BseCI ATCGAT 1 cut(s) 295
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 7 cut(s) 87, 90, 93, 96, 99, 128, 182
BseXI GCAGC 4 cut(s) 52, 55, 320, 342
BshVI ATCGAT 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 247, 292
BspACI CCGC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 91, 249
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 3 cut(s) 242, 255, 300
BspT104I TTCGAA 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 152
BssMI GATC 2 cut(s) 247, 292
BssNI GRCGYC 2 cut(s) 5, 17
BstACI GRCGYC 2 cut(s) 5, 17
BstAFI CTTAAG 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 2 cut(s) 250, 295
BstMBI GATC 2 cut(s) 247, 292
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 52, 55, 320, 342
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 295
BsuI GTATCC 1 cut(s) 333
BsuTUI ATCGAT 1 cut(s) 295
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 46, 336
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 90, 272, 308
ClaI ATCGAT 1 cut(s) 295
CseI GACGC 1 cut(s) 6
CviJI RGCY 4 cut(s) 46, 135, 181, 333
CviKI_1 RGCY 4 cut(s) 46, 135, 181, 333
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 249, 294
DpnII GATC 2 cut(s) 247, 292
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 90, 272, 308
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 183
FaiI YATR 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 41, 44, 331, 334
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 41, 44, 331, 334
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 41, 44, 331, 334
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 2 cut(s) 5, 17
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 118, 317
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 28, 93
Hpy188I TCNGA 5 cut(s) 10, 71, 117, 217, 347
Hpy8I GTNNAC 2 cut(s) 28, 93
Hpy99I CGWCG 3 cut(s) 22, 25, 236
HpyAV CCTTC 3 cut(s) 102, 230, 299
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 163, 330
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 2 cut(s) 5, 17
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 247, 292
LpnPI CCDG 9 cut(s) 20, 32, 69, 149, 226, 269, 288, 299, 322
Lsp1109I GCAGC 4 cut(s) 52, 55, 320, 342
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 231
MalI GATC 2 cut(s) 249, 294
MboI GATC 2 cut(s) 247, 292
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 49, 225
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 2 cut(s) 153, 263
MspA1I CMGCKG 2 cut(s) 46, 333
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 247, 292
NlaIV GGNNCC 2 cut(s) 91, 249
NspV TTCGAA 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 118, 317
PkrI GCNGC 4 cut(s) 42, 45, 332, 335
Psp124BI GAGCTC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 91, 249
PspPI GGNCC 3 cut(s) 90, 272, 308
PstNI CAGNNNCTG 2 cut(s) 46, 336
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 2 cut(s) 46, 333
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 153, 263
SatI GCNGC 4 cut(s) 41, 44, 331, 334
Sau3AI GATC 2 cut(s) 247, 292
Sau96I GGNCC 3 cut(s) 90, 272, 308
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 183
SetI ASST 6 cut(s) 48, 183, 234, 245, 277, 335
SfaNI GCATC 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 3 cut(s) 90, 272, 308
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 311
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 234
TaqI TCGA 5 cut(s) 141, 183, 234, 295, 303
TasI AATT 1 cut(s) 218
TfiI GAWTC 2 cut(s) 118, 317
Tru1I TTAA 2 cut(s) 153, 263
Tru9I TTAA 2 cut(s) 153, 263
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 40, 43, 330, 333
TspRI CASTG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 152
VpaK11BI GGWCC 3 cut(s) 90, 272, 308
XmnI GAANNNNTTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.