Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010807

Physical Location & Seq

Genomic Coordinates Reverse (-)

27449805 .. 27451925

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCGTCCGATACGGCGTCGTCGGTGGAAGAACAGGCGCAGCAGCTGGTTGCTCCTGGTGGTTTAGTCGGAGGAGAAGGAGGAGGGTCCACTGATAAGAGAGGAAGGCATCGGATTCTCGCCGAACTCAGCCGCCTCGAACAAGAACTTAAGTTCTTGCAGGACGAGTTGGGAGAGCTCGAAAGAACCGAAAATGTTTCAACCATTTGTTCAGGATTGCTGCCATACGTCGAAGGCAGGCCAGATCCTCTACTCCCATTAACAAATGGACCTGTAAATCTGGTATGGGATCGATGGTTCGAAGGACCGCAGGATTCACAAAGTTGCAGCTGCTGGATACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

115

Amino Acids

12.44

Weight (kDa)

4.43

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63420 AT3G63420 AT3G63420
fragaria_vesca	FvH4_2g22840
malus_domestica	MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica	Prupe.8G233500_v2.0.a1
pyrus_communis	pycom03g20330 pycom11g24520
rosa_chinensis	RchiOBHm_Chr6g0289751
rosa_laevigata	RLG00000012269
rosa_multiflora	Rmu_sc0005640.1_g000016
rosa_roxburghii	Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa	Rorug06G0206300
rosa_samantha	Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana	Rw6G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	133, 308
AclWI	GGATC	2 cut(s)	239, 297
AcyI	GRCGYC	2 cut(s)	5, 17
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	3 cut(s)	46, 178, 330
AluI	AGCT	3 cut(s)	46, 178, 330
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	239, 297
AlwNI	CAGNNNCTG	2 cut(s)	46, 333
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	5 cut(s)	40, 43, 220, 327, 330
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	87, 269, 305
AsuII	TTCGAA	1 cut(s)	300
AvaII	GGWCC	3 cut(s)	87, 269, 305
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	52, 55, 207, 317, 339
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	6 cut(s)	41, 44, 133, 221, 328, 331
BlsI	GCNGC	6 cut(s)	42, 45, 134, 222, 329, 332
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	3 cut(s)	87, 269, 305
BmgT120I	GGNCC	3 cut(s)	87, 269, 305
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	292
BsaHI	GRCGYC	2 cut(s)	5, 17
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	142
BseRI	GAGGAG	2 cut(s)	87, 96
BseXI	GCAGC	5 cut(s)	52, 55, 207, 317, 339
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	244, 289
BspACI	CCGC	2 cut(s)	133, 308
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	2 cut(s)	239, 297
BspT104I	TTCGAA	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	149
BssMI	GATC	2 cut(s)	244, 289
BssNI	GRCGYC	2 cut(s)	5, 17
Bst2UI	CCWGG	1 cut(s)	57
BstACI	GRCGYC	2 cut(s)	5, 17
BstAFI	CTTAAG	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	247, 292
BstMBI	GATC	2 cut(s)	244, 289
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	52, 55, 207, 317, 339
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	2 cut(s)	46, 333
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	87, 269, 305
ClaI	ATCGAT	1 cut(s)	292
CseI	GACGC	1 cut(s)	6
CviJI	RGCY	5 cut(s)	46, 132, 178, 241, 330
CviKI_1	RGCY	5 cut(s)	46, 132, 178, 241, 330
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	246, 291
DpnII	GATC	2 cut(s)	244, 289
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	87, 269, 305
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	2 cut(s)	226, 286
Fnu4HI	GCNGC	6 cut(s)	41, 44, 133, 221, 328, 331
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	41, 44, 133, 221, 328, 331
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	41, 44, 133, 221, 328, 331
HaeIII	GGCC	1 cut(s)	241
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	5, 17
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	115, 314
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	10, 71, 114, 344
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	3 cut(s)	22, 25, 233
HpyAV	CCTTC	4 cut(s)	71, 99, 227, 296
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	160, 327
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	2 cut(s)	5, 17
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	244, 289
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	5 cut(s)	52, 55, 207, 317, 339
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	246, 291
MboI	GATC	2 cut(s)	244, 289
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	6 cut(s)	65, 74, 77, 95, 146, 258
MseI	TTAA	2 cut(s)	150, 260
MspA1I	CMGCKG	2 cut(s)	46, 330
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	244, 289
NlaIV	GGNNCC	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	115, 314
PkrI	GCNGC	6 cut(s)	42, 45, 134, 222, 329, 332
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	87, 269, 305
PstNI	CAGNNNCTG	2 cut(s)	46, 333
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	46, 330
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	150, 260
SatI	GCNGC	6 cut(s)	41, 44, 133, 221, 328, 331
Sau3AI	GATC	2 cut(s)	244, 289
Sau96I	GGNCC	3 cut(s)	87, 269, 305
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	48, 180, 231, 274, 332
SfaNI	GCATC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	300
SinI	GGWCC	3 cut(s)	87, 269, 305
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	2 cut(s)	133, 308
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	5 cut(s)	138, 180, 231, 292, 300
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	115, 314
Tru1I	TTAA	2 cut(s)	150, 260
Tru9I	TTAA	2 cut(s)	150, 260
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	5 cut(s)	40, 43, 220, 327, 330
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	87, 269, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.