Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005640.1

Orthogroup ID

OG0010807

Physical Location & Seq

Genomic Coordinates Forward (+)

71378 .. 73172

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005640.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcgtcggatacggcgtcgtctatggacgaacaacaggcacagcttgtcgctgctacttcaacagacaacagaggaaggcatcgggttcttgccgagctcaaccgactcgaacaagaactcaaattcttggaggaagagttgggagagcttgaacaaactgaaaacgtttccaccatatgttctgaattgctgccctataccgaaggccggccggatcctctacttccactaacaaatgggcctataaatgtaatatgggatcgatggtttgaaggacctcaaaactcacaaagttgcagttgcttgatactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

4.26

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63420 AT3G63420 AT3G63420
fragaria_vesca	FvH4_2g22840
malus_domestica	MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica	Prupe.8G233500_v2.0.a1
pyrus_communis	pycom03g20330 pycom11g24520
rosa_chinensis	RchiOBHm_Chr6g0289751
rosa_laevigata	RLG00000012269
rosa_multiflora	Rmu_sc0005640.1_g000016
rosa_roxburghii	Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa	Rorug06G0206300
rosa_samantha	Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana	Rw6G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	3 cut(s)	212, 225, 270
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	5, 17
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	63, 155, 275
AluBI	AGCT	3 cut(s)	46, 100, 151
AluI	AGCT	3 cut(s)	46, 100, 151
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	212, 225, 270
AoxI	GGCC	3 cut(s)	208, 212, 242
ApeKI	GCWGC	2 cut(s)	53, 193
ApoI	RAATTY	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	242, 278
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	40, 180
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	4
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	2 cut(s)	54, 194
BlsI	GCNGC	2 cut(s)	55, 195
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	242, 278
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	265
BsaHI	GRCGYC	2 cut(s)	5, 17
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	40, 180
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	210, 214, 244
BshVI	ATCGAT	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	211, 215
BslI	CCNNNNNNNGG	1 cut(s)	210
BsnI	GGCC	3 cut(s)	210, 214, 244
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	217, 262
BspANI	GGCC	3 cut(s)	210, 214, 244
BspDI	ATCGAT	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	212, 225, 270
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	2 cut(s)	217, 262
BssNI	GRCGYC	2 cut(s)	5, 17
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	5, 17
BstC8I	GCNNGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	220, 265
BstMBI	GATC	2 cut(s)	217, 262
BstMCI	CGRYCG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	40, 180
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZI	CGGCCG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	210, 214, 244
BsuTUI	ATCGAT	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	242, 278
ClaI	ATCGAT	1 cut(s)	265
CseI	GACGC	1 cut(s)	6
CviJI	RGCY	6 cut(s)	46, 100, 151, 210, 214, 244
CviKI_1	RGCY	6 cut(s)	46, 100, 151, 210, 214, 244
DpnI	GATC	2 cut(s)	219, 264
DpnII	GATC	2 cut(s)	217, 262
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	102
FaiI	YATR	6 cut(s)	26, 179, 181, 201, 248, 259
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	54, 194
FriOI	GRGCYC	1 cut(s)	102
FseI	GGCCGGCC	1 cut(s)	214
Fsp4HI	GCNGC	2 cut(s)	54, 194
GluI	GCNGC	2 cut(s)	54, 194
HaeIII	GGCC	3 cut(s)	210, 214, 244
HapII	CCGG	2 cut(s)	211, 215
HgaI	GACGC	1 cut(s)	6
Hin1I	GRCGYC	2 cut(s)	5, 17
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	211, 215
Hpy188I	TCNGA	2 cut(s)	10, 187
Hpy99I	CGWCG	2 cut(s)	10, 22
HpyAV	CCTTC	3 cut(s)	72, 200, 269
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	2 cut(s)	5, 17
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	217, 262
LpnPI	CCDG	3 cut(s)	23, 224, 228
Lsp1109I	GCAGC	2 cut(s)	40, 180
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	219, 264
MboI	GATC	2 cut(s)	217, 262
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	125, 188
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	68, 127, 231, 291
MroNI	GCCGGC	1 cut(s)	210
MspI	CCGG	2 cut(s)	211, 215
NaeI	GCCGGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	2 cut(s)	217, 262
NgoMIV	GCCGGC	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	55, 195
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	242, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	217
RigI	GGCCGGCC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	2 cut(s)	54, 194
Sau3AI	GATC	2 cut(s)	217, 262
Sau96I	GGNCC	2 cut(s)	242, 278
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	5 cut(s)	48, 102, 153, 171, 283
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	2 cut(s)	125, 188
SstI	GAGCTC	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	111, 265
TasI	AATT	2 cut(s)	125, 188
TseI	GCWGC	2 cut(s)	53, 193
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.