Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008044

Physical Location & Seq

Genomic Coordinates Forward (+)

23452808 .. 23456078

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGCGGAGAAACTCAGTGATGGCAGCAGCATCATCTCAGTCCATCCTAGACCCTCCAAGGGTTTCTCCTCGAAGCTTCTCGATCTTCTCGAGAGACTTGTTGTCAAGCTCATGCACGATGCTTCTCTCCCTCTCCACTACCTCTCAGGCAACTTCGCTCCCATCCGTGATGAAACTCCTCCCGTCAAGGATCTCCCCGTCCATGGATTTCTTCCCGAATGCTTGAATGGTGAATTTGTGAGGGTTGGTCCAAACCCCAAGTTTGATGCTGTCGCTGGATATCACTGGTTTGATGGAGATGGGATGATTCATGGGGTACGCATCAAAGATGGGAAAGCTACTTATGTTTCTCGATATGTTAAGACATCACGTCTTAAGCAGGAAGAGTTCTTCGGAGCTGCCAAATTCATGAAGATTGGTGACCTTAAGGGGTTTTTCGGATTGCTAATGGTCAATGTCCAACAGCTGAGAACGAAGCTCAAAATATTGGACAACACTTATGGAAATGGAACTGCCAATACAGCACTCGTATATCACCATGGAAAACTTCTAGCATTACAGGAGGCAGATAAGCCGTACGTCATCAAAGTTTTGGAAGATGGAGACCTGCAAACTCTTGGTATAATAGATTATGACAAGAGATTGACCCACTCCTTCACTGCTCACCCAAAAGTTGACCCGGTTACGGGTGAAATGTTTACATTCGGCTATTCGCATACGCCACCTTATCTCACATACAGAGTTATCTCGAAAGATGGCATTATGCATGACCCAGTCCCAATTACTATATCAGAGCCTATCATGATGCATGATTTTGCTATTACTGAGACTTATGCAATCTTCATGGATCTTCCTATGCACTTCAGGCCAAAGGAAATGGTGAAAGAGAAGAAAATGATATACTCATTTGATCCCACAAAAAAGGCTCGTTTTGGTGTTCTTCCACGCTATGCCAAGGATGAACTTATGATTAGATGGTTTGAGCTTCCCAACTGCTTTATTTTCCACAACGCCAATGCTTGGGAAGAAGAGGATGAAGTCGTCCTCATCACTTGTCGTCTTGAGAATCCAGATCTTGACATGGTCAGTGGGAAAGTGAAAGAAAAACTCGAAAATTTTGGCAACGAACTGTACGAAATGAGATTCAACATGAAAACGGGCTCAGCTTCTCAAAAAAAACTATCCGCATCTGCGGTTGATTTCCCCAGAATCAATGAGTGCTACACCGGAAAGAAACAGAGATACGTATATGGAACAATTCTGGACAGTATCGCAAAGGTTACCGGAATCATCAAGTTTGATCTGCATGCAGAAGCTGAGACAGGGAAAAGAATGCTGGAAGTAGGAGGTAATATCAAAGGAATATATGACCTGGGAGAAGGCAGATATGGTTCAGAGGCTATCTATGTTCCGCGTGAGACAGCAGAAGAAGACGACGGTTACTTGATATTCTTTGTTCATGATGAAAACACAGGGAAATCATGCGTGACTGTGATAGACGCAAAAACAATGTCGGCTGAACCGGTGGCAGTGGTGGAGCTGCCGCACAGGGTCCCATATGGCTTCCATGCCTTGTTTGTTACAGAGGAACAACTCCAGGAACAAACTCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009506 GO:0009987 GO:0010436 GO:0012505 GO:0016020 GO:0016042 GO:0016108 GO:0016110 GO:0016115 GO:0016116 GO:0016118 GO:0016119 GO:0016121 GO:0016122 GO:0016124 GO:0016491 GO:0016701 GO:0016702 GO:0030054 GO:0031090 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046247 GO:0051213 GO:0055044 GO:0055114 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

538

Amino Acids

60.91

Weight (kDa)

6.05

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	52 - 527	9.2e-145	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63520
fragaria_vesca	FvH4_7g01130 FvH4_7g01130 FvH4_7g01130
malus_domestica	MD02G1309700.v1.1 MD07G1011500.v1.1
prunus_persica	Prupe.2G014700_v2.0.a1 Prupe.2G014700_v2.0.a1
pyrus_communis	pycom02g26070 pycom02g26080 pycom07g00960
rosa_chinensis	RchiOBHm_Chr1g0316181 RchiOBHm_Chr1g0316311
rosa_laevigata	RLG00000030681 RLG00000030689
rosa_multiflora	Rmu_sc0002531.1_g000009 Rmu_sc0008559.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331080 Rroxscaffold_4G00331110
rosa_rugosa	Rorug01G0009600
rosa_samantha	Rh1AG019400 Rh1BG014400 Rh1DG014400
rosa_wichuraiana	Rw1G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	1020
AccII	CGCG	1 cut(s)	1414
AciI	CCGC	5 cut(s)	5, 1185, 1193, 1412, 1544
AclWI	GGATC	3 cut(s)	198, 855, 905
AcsI	RAATTY	3 cut(s)	233, 404, 1114
AcuI	CTGAAG	1 cut(s)	847
AfaI	GTAC	3 cut(s)	318, 578, 1133
AfiI	CCNNNNNNNGG	5 cut(s)	59, 203, 685, 686, 1020
AflII	CTTAAG	2 cut(s)	374, 425
AgeI	ACCGGT	1 cut(s)	1522
AgsI	TTSAA	2 cut(s)	226, 1147
AhdI	GACNNNNNGTC	2 cut(s)	101, 369
AjiI	CACGTC	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	1371, 1596
Alw26I	GTCTC	5 cut(s)	88, 597, 821, 1313, 1412
AlwI	GGATC	3 cut(s)	198, 855, 905
AlwNI	CAGNNNCTG	1 cut(s)	1316
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	866
ApeKI	GCWGC	4 cut(s)	24, 27, 398, 1540
ApoI	RAATTY	3 cut(s)	233, 404, 1114
ArsI	GACNNNNNNTTYG	2 cut(s)	1496, 1528
AsiGI	ACCGGT	1 cut(s)	1522
AspS9I	GGNCC	2 cut(s)	248, 1552
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	6 cut(s)	242, 431, 527, 656, 701, 892
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	248, 1552
BanII	GRGCYC	1 cut(s)	1163
BbsI	GAAGAC	1 cut(s)	1437
BbvI	GCAGC	4 cut(s)	36, 39, 385, 1527
BccI	CCATC	9 cut(s)	14, 51, 170, 287, 293, 323, 593, 749, 969
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	1373, 1598
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	5 cut(s)	88, 597, 821, 1313, 1412
BfaI	CTAG	2 cut(s)	48, 551
BfrI	CTTAAG	2 cut(s)	374, 425
BfuAI	ACCTGC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	1072
BisI	GCNGC	5 cut(s)	25, 28, 399, 1541, 1544
BlpI	GCTNAGC	1 cut(s)	1162
BlsI	GCNGC	5 cut(s)	26, 29, 400, 1542, 1545
Bme1390I	CCNGG	3 cut(s)	680, 1373, 1598
Bme18I	GGWCC	2 cut(s)	248, 1552
BmeRI	GACNNNNNGTC	2 cut(s)	101, 369
BmeT110I	CYCGRG	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	248, 1552
BmiI	GGNNCC	2 cut(s)	1553, 1554
BmrFI	CCNGG	3 cut(s)	680, 1373, 1598
BmrI	ACTGGG	1 cut(s)	767
BmsI	GCATC	6 cut(s)	39, 109, 256, 330, 795, 1196
BmuI	ACTGGG	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	1437
BpmI	CTGGAG	1 cut(s)	1580
Bpu1102I	GCTNAGC	1 cut(s)	1162
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	1246
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	57, 202, 538, 954, 1372
BsaWI	WCCGGW	3 cut(s)	1226, 1283, 1522
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 203, 685, 686, 1020
Bse118I	RCCGGY	1 cut(s)	1522
Bse1I	ACTGG	2 cut(s)	290, 773
BseBI	CCWGG	2 cut(s)	1373, 1598
BseDI	CCNNGG	5 cut(s)	57, 202, 538, 954, 1372
BseGI	GGATG	5 cut(s)	43, 162, 309, 964, 1039
BseLI	CCNNNNNNNGG	5 cut(s)	59, 203, 685, 686, 1020
BseMII	CTCAG	7 cut(s)	28, 51, 159, 458, 816, 1176, 1308
BseNI	ACTGG	2 cut(s)	290, 773
BseRI	GAGGAG	2 cut(s)	58, 168
BseXI	GCAGC	4 cut(s)	36, 39, 385, 1527
Bsh1236I	CGCG	1 cut(s)	1414
BshFI	GGCC	1 cut(s)	868
BshTI	ACCGGT	1 cut(s)	1522
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	680, 1227, 1284, 1523
BsiWI	CGTACG	1 cut(s)	576
BslFI	GGGAC	2 cut(s)	761, 1538
BslI	CCNNNNNNNGG	5 cut(s)	59, 203, 685, 686, 1020
BsmAI	GTCTC	5 cut(s)	88, 597, 821, 1313, 1412
BsmFI	GGGAC	2 cut(s)	761, 1538
BsmI	GAATGC	2 cut(s)	224, 1338
BsnI	GGCC	1 cut(s)	868
Bso31I	GGTCTC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	1163
Bsp143I	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
Bsp1720I	GCTNAGC	1 cut(s)	1162
Bsp19I	CCATGG	2 cut(s)	202, 538
BspACI	CCGC	5 cut(s)	5, 1185, 1193, 1412, 1544
BspANI	GGCC	1 cut(s)	868
BspCNI	CTCAG	7 cut(s)	27, 50, 158, 459, 817, 1175, 1309
BspFNI	CGCG	1 cut(s)	1414
BspHI	TCATGA	3 cut(s)	408, 801, 1459
BspLI	GGNNCC	2 cut(s)	1553, 1554
BspMI	ACCTGC	1 cut(s)	615
BspPI	GGATC	3 cut(s)	198, 855, 905
BspTI	CTTAAG	2 cut(s)	374, 425
BspTNI	GGTCTC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	1522
BsrI	ACTGG	2 cut(s)	290, 773
BssAI	RCCGGY	1 cut(s)	1522
BssECI	CCNNGG	5 cut(s)	57, 202, 538, 954, 1372
BssMI	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
BssT1I	CCWWGG	4 cut(s)	57, 202, 538, 954
Bst2UI	CCWGG	2 cut(s)	1373, 1598
Bst4CI	ACNGT	4 cut(s)	1131, 1268, 1439, 1492
Bst6I	CTCTTC	2 cut(s)	378, 1023
BstAFI	CTTAAG	2 cut(s)	374, 425
BstBAI	YACGTR	1 cut(s)	1246
BstC8I	GCNNGC	1 cut(s)	1308
BstDEI	CTNAG	7 cut(s)	14, 37, 145, 467, 825, 1162, 1317
BstDSI	CCRYGG	2 cut(s)	202, 538
BstEII	GGTNACC	2 cut(s)	419, 1279
BstF5I	GGATG	5 cut(s)	43, 162, 309, 964, 1039
BstFNI	CGCG	1 cut(s)	1414
BstKTI	GATC	6 cut(s)	85, 193, 850, 913, 1075, 1303
BstMAI	GTCTC	5 cut(s)	88, 597, 821, 1313, 1412
BstMBI	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 865
BstNI	CCWGG	2 cut(s)	1373, 1598
BstNSI	RCATGY	1 cut(s)	1310
BstPI	GGTNACC	2 cut(s)	419, 1279
BstSCI	CCNGG	3 cut(s)	678, 1371, 1596
BstSNI	TACGTA	1 cut(s)	1246
BstUI	CGCG	1 cut(s)	1414
BstV1I	GCAGC	4 cut(s)	36, 39, 385, 1527
BstV2I	GAAGAC	1 cut(s)	1437
BstX2I	RGATCY	3 cut(s)	190, 847, 1072
BstYI	RGATCY	3 cut(s)	190, 847, 1072
BsuRI	GGCC	1 cut(s)	868
BtgI	CCRYGG	2 cut(s)	202, 538
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	5 cut(s)	43, 162, 309, 964, 1039
BtsI	GCAGTG	2 cut(s)	657, 1536
BtsIMutI	CAGTG	5 cut(s)	22, 283, 657, 1093, 1536
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	1308
CaiI	CAGNNNCTG	1 cut(s)	1316
CciI	TCATGA	3 cut(s)	408, 801, 1459
Cfr10I	RCCGGY	1 cut(s)	1522
Cfr13I	GGNCC	2 cut(s)	248, 1552
CseI	GACGC	1 cut(s)	1508
Csp6I	GTAC	3 cut(s)	317, 577, 1132
CspAI	ACCGGT	1 cut(s)	1522
CviQI	GTAC	3 cut(s)	317, 577, 1132
DdeI	CTNAG	7 cut(s)	14, 37, 145, 467, 825, 1162, 1317
DpnI	GATC	6 cut(s)	84, 192, 849, 912, 1074, 1302
DpnII	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
DriI	GACNNNNNGTC	2 cut(s)	101, 369
Eam1104I	CTCTTC	2 cut(s)	378, 1023
Eam1105I	GACNNNNNGTC	2 cut(s)	101, 369
EarI	CTCTTC	2 cut(s)	378, 1023
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	1246
Eco130I	CCWWGG	4 cut(s)	57, 202, 538, 954
Eco24I	GRGCYC	1 cut(s)	1163
Eco31I	GGTCTC	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	248, 1552
Eco57I	CTGAAG	1 cut(s)	847
Eco88I	CYCGRG	1 cut(s)	89
Eco91I	GGTNACC	2 cut(s)	419, 1279
EcoO109I	RGGNCCY	1 cut(s)	1552
EcoO65I	GGTNACC	2 cut(s)	419, 1279
EcoRII	CCWGG	2 cut(s)	1371, 1596
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	4 cut(s)	57, 202, 538, 954
EcoT22I	ATGCAT	2 cut(s)	768, 810
EcoT38I	GRGCYC	1 cut(s)	1163
ErhI	CCWWGG	4 cut(s)	57, 202, 538, 954
FaqI	GGGAC	2 cut(s)	761, 1538
FauNDI	CATATG	1 cut(s)	1558
Fnu4HI	GCNGC	5 cut(s)	25, 28, 399, 1541, 1544
FokI	GGATG	5 cut(s)	30, 149, 316, 971, 1046
FriOI	GRGCYC	1 cut(s)	1163
Fsp4HI	GCNGC	5 cut(s)	25, 28, 399, 1541, 1544
FspBI	CTAG	2 cut(s)	48, 551
GluI	GCNGC	5 cut(s)	25, 28, 399, 1541, 1544
GsuI	CTGGAG	1 cut(s)	1580
HaeIII	GGCC	1 cut(s)	868
HapII	CCGG	4 cut(s)	680, 1227, 1284, 1523
HgaI	GACGC	1 cut(s)	1508
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	5 cut(s)	307, 1066, 1143, 1209, 1287
HpaII	CCGG	4 cut(s)	680, 1227, 1284, 1523
HphI	GGTGA	6 cut(s)	242, 431, 527, 656, 701, 892
Hpy166II	GTNNAC	2 cut(s)	676, 699
Hpy188I	TCNGA	4 cut(s)	395, 440, 793, 1396
Hpy8I	GTNNAC	2 cut(s)	676, 699
Hpy99I	CGWCG	1 cut(s)	1439
HpyAV	CCTTC	2 cut(s)	664, 1373
HpyCH4III	ACNGT	4 cut(s)	1131, 1268, 1439, 1492
HpyCH4IV	ACGT	3 cut(s)	370, 579, 1245
HpyCH4V	TGCA	8 cut(s)	115, 610, 766, 808, 836, 859, 1306, 1310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 865
HpyF3I	CTNAG	7 cut(s)	14, 37, 145, 467, 825, 1162, 1317
HpySE526I	ACGT	3 cut(s)	370, 579, 1245
KflI	GGGWCCC	1 cut(s)	1552
Kzo9I	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
LmnI	GCTCC	3 cut(s)	163, 395, 1537
Lsp1109I	GCAGC	4 cut(s)	36, 39, 385, 1527
LweI	GCATC	6 cut(s)	39, 109, 256, 330, 795, 1196
MaeI	CTAG	2 cut(s)	48, 551
MaeII	ACGT	3 cut(s)	370, 579, 1245
MaeIII	GTNAC	6 cut(s)	419, 682, 1279, 1439, 1486, 1579
MalI	GATC	6 cut(s)	84, 192, 849, 912, 1074, 1302
MboI	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
MflI	RGATCY	3 cut(s)	190, 847, 1072
MhlI	GDGCHC	1 cut(s)	1163
MluCI	AATT	5 cut(s)	233, 404, 780, 1114, 1257
MmeI	TCCRAC	1 cut(s)	484
Mph1103I	ATGCAT	2 cut(s)	768, 810
MseI	TTAA	3 cut(s)	360, 375, 426
MspA1I	CMGCKG	1 cut(s)	466
MspCI	CTTAAG	2 cut(s)	374, 425
MspI	CCGG	4 cut(s)	680, 1227, 1284, 1523
MspR9I	CCNGG	3 cut(s)	680, 1373, 1598
Mva1269I	GAATGC	2 cut(s)	224, 1338
MvaI	CCWGG	2 cut(s)	1373, 1598
MvnI	CGCG	1 cut(s)	1414
MwoI	GCNNNNNNNGC	2 cut(s)	521, 865
NciI	CCSGG	1 cut(s)	680
NcoI	CCATGG	2 cut(s)	202, 538
NdeI	CATATG	1 cut(s)	1558
NdeII	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
NlaIV	GGNNCC	2 cut(s)	1553, 1554
NmuCI	GTSAC	2 cut(s)	419, 1486
NsiI	ATGCAT	2 cut(s)	768, 810
NspI	RCATGY	1 cut(s)	1310
PaeI	GCATGC	1 cut(s)	1310
PaeR7I	CTCGAG	1 cut(s)	89
PagI	TCATGA	3 cut(s)	408, 801, 1459
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 1131
PctI	GAATGC	2 cut(s)	224, 1338
PfeI	GAWTC	5 cut(s)	307, 1066, 1143, 1209, 1287
Pfl23II	CGTACG	1 cut(s)	576
PflFI	GACNNNGTC	2 cut(s)	773, 1082
PflMI	CCANNNNNTGG	1 cut(s)	1020
PfoI	TCCNGGA	1 cut(s)	1596
PinAI	ACCGGT	1 cut(s)	1522
PkrI	GCNGC	5 cut(s)	26, 29, 400, 1542, 1545
Ppu21I	YACGTR	1 cut(s)	1246
PpuMI	RGGWCCY	1 cut(s)	1552
Psp5II	RGGWCCY	1 cut(s)	1552
Psp6I	CCWGG	2 cut(s)	1371, 1596
PspEI	GGTNACC	2 cut(s)	419, 1279
PspGI	CCWGG	2 cut(s)	1371, 1596
PspLI	CGTACG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	1553, 1554
PspPI	GGNCC	2 cut(s)	248, 1552
PspPPI	RGGWCCY	1 cut(s)	1552
PsrI	GAACNNNNNNTAC	2 cut(s)	502, 534
PstNI	CAGNNNCTG	1 cut(s)	1316
PsuI	RGATCY	3 cut(s)	190, 847, 1072
PsyI	GACNNNGTC	2 cut(s)	773, 1082
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	3 cut(s)	318, 578, 1133
RsaNI	GTAC	3 cut(s)	317, 577, 1132
SaqAI	TTAA	3 cut(s)	360, 375, 426
SatI	GCNGC	5 cut(s)	25, 28, 399, 1541, 1544
Sau3AI	GATC	6 cut(s)	82, 190, 847, 910, 1072, 1300
Sau96I	GGNCC	2 cut(s)	248, 1552
ScrFI	CCNGG	3 cut(s)	680, 1373, 1598
SduI	GDGCHC	1 cut(s)	1163
SfaNI	GCATC	6 cut(s)	39, 109, 256, 330, 795, 1196
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	248, 1552
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	4 cut(s)	89, 374, 425, 1061
SmoI	CTYRAG	4 cut(s)	89, 374, 425, 1061
SnaBI	TACGTA	1 cut(s)	1246
SphI	GCATGC	1 cut(s)	1310
Sse9I	AATT	5 cut(s)	233, 404, 780, 1114, 1257
SsiI	CCGC	5 cut(s)	5, 1185, 1193, 1412, 1544
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	2 cut(s)	48, 551
StyD4I	CCNGG	3 cut(s)	678, 1371, 1596
StyI	CCWWGG	4 cut(s)	57, 202, 538, 954
TaaI	ACNGT	4 cut(s)	1131, 1268, 1439, 1492
TaiI	ACGT	3 cut(s)	373, 582, 1248
TaqI	TCGA	6 cut(s)	71, 81, 90, 352, 749, 1110
TasI	AATT	5 cut(s)	233, 404, 780, 1114, 1257
TauI	GCSGC	1 cut(s)	1546
TfiI	GAWTC	5 cut(s)	307, 1066, 1143, 1209, 1287
Tru1I	TTAA	3 cut(s)	360, 375, 426
Tru9I	TTAA	3 cut(s)	360, 375, 426
TscAI	CASTG	5 cut(s)	22, 290, 664, 1093, 1536
TseFI	GTSAC	2 cut(s)	419, 1486
TseI	GCWGC	4 cut(s)	24, 27, 398, 1540
Tsp45I	GTSAC	2 cut(s)	419, 1486
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	5 cut(s)	22, 290, 664, 1093, 1536
Tth111I	GACNNNGTC	2 cut(s)	773, 1082
Van91I	CCANNNNNTGG	1 cut(s)	1020
Vha464I	CTTAAG	2 cut(s)	374, 425
VpaK11BI	GGWCC	2 cut(s)	248, 1552
XapI	RAATTY	3 cut(s)	233, 404, 1114
XceI	RCATGY	1 cut(s)	1310
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	2 cut(s)	48, 551
Zsp2I	ATGCAT	2 cut(s)	768, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.