Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008044

Physical Location & Seq

Genomic Coordinates Forward (+)

64915377 .. 64923508

Gene Structure 8132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTATCGCATCGGCTCTTGGGATGAAGCTGTTGCGGCGAGAGATATTCGGAAGAGAAGTACTCGAATGCTTTCCTCGGATTCCGGCCGGAAGAAACGAACTTTGTCTGTGGATTGGAACCATCTTGATGAGGAGATGAATAGAAGGAGGCAAGAGAGCCGGAAGAAGAAGAAGAGTTTTTTACGGATGCTTGACGGCATGGACCAATTGGGAGGAAATTGGGAGTTCGGGGACTTTTTAGATGTTCTCAAAGTTTTGGAAGATGGAGATCTGCAAACAGTTGGCTTGTTGGATTATGACAAGAGATTGAAGCATTCCTTCACTGCTCATCCAAAGGTTGACCCTTTCACTGGGGAGATGTTTACATTTGGCTATTCGCATGATCCACCATATGTCACATACAGAGTAATTTCAAAGGATGGTTTCATGCATGATCCTATACCTATAACAGTACCAGCTCCTATCATGATGCATGATTTTGCGATTACTGAGAACTATGCAATTTTCATGGATCTTCCCTTGTATTTCAGACCAAAGGAAATGGTTAAGGCAGGCAAGCTGATATTCTCATTTGATGAAACAAAAAAAGCTCGCTTTGGAGTCCTTCCACGTTATGCAAAGGATGATTTGCTAATCAGATGGTTTGAGCTTCCAAATTGCTTCATTTTCCATAATGCTAATGCTTGGGAGGAAGAGGACGAAGTTGTTTTAATGACATGCCGCCTTGAGAATCCAGATTTAGACATGGTCAATGGACCTATCAAGAAAAAGCCTGACAACTTCAAAAATGAGCTGTATGAGATGAGATTCAACTTAAAAACCGGTTTAGCAACACAGAAGAAATTATCAGAATCAGATGTAGATTTTCCTAGGGTGAATGAGAGCTACACTGGAAGAAAATCAGCAATTCATGTACTAGATGCAAAAACAATGTCCAGTGATCCTGTTGCAATTGTTGAGTTGCCCCACAGAGTTCCATATGGGTTCCATGCCTTCTTTGTGACAGAGGAGCAATTGCAAGAACAAGCTAACAACAGGACTAACCTAGCTAGCTTTGTTGGGTTTGCTGTGTTGGAGTTCTTGGACCTCTCTCATAACAGTTTGTTTGGGAGCATTTCCTTAGAGTTAGATGGATTGGTTGGGCTTAAAAGGTTGAACCTTAGCTTCAACCATTTCGGAGGGTCTGTTCCTACTTATCTTGGGAAATGCATGGTTTTGGGGGAGCTTGTGCTTTCTATGAATGGATTTCACGGTCTAATGCCTGTTGAAATTGTGGGCTATCAGAATTTGACTCTGATTGATCTAAGCACAAATAGTCTTTATGGGTCCATTAATTCCTCAGAGAATGGGAGAGCTTTCCAAGCTGGAAGTTTTGATTCTATCTTCAAATATGTTGACTGGGAAAATCCCACAAAGCCTTTTCAACATCACAAGTCTCAAGCGTTTTGCGGCACATTCAAAATATTTCCGGGGTCCACTTTCCGGTGCAATTACAAAGTATTTGGAAAGTTTGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPE65

Protein Analysis

506

Amino Acids

57.96

Weight (kDa)

6.58

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	90 - 301	5.8e-62	Retinal pigment epithelial membrane protein
RPE65	PF03055	300 - 334	2.1e-09	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63520
fragaria_vesca	FvH4_7g01130 FvH4_7g01130 FvH4_7g01130
malus_domestica	MD02G1309700.v1.1 MD07G1011500.v1.1
prunus_persica	Prupe.2G014700_v2.0.a1 Prupe.2G014700_v2.0.a1
pyrus_communis	pycom02g26070 pycom02g26080 pycom07g00960
rosa_chinensis	RchiOBHm_Chr1g0316181 RchiOBHm_Chr1g0316311
rosa_laevigata	RLG00000030681 RLG00000030689
rosa_multiflora	Rmu_sc0002531.1_g000009 Rmu_sc0008559.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331080 Rroxscaffold_4G00331110
rosa_rugosa	Rorug01G0009600
rosa_samantha	Rh1AG019400 Rh1BG014400 Rh1DG014400
rosa_wichuraiana	Rw1G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 721, 1449
AclWI	GGATC	4 cut(s)	377, 428, 519, 935
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	1285
AfaI	GTAC	3 cut(s)	61, 453, 915
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1482
AgeI	ACCGGT	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	1170, 1202
Alw26I	GTCTC	1 cut(s)	1440
AlwI	GGATC	4 cut(s)	377, 428, 519, 935
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	1285
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AseI	ATTAAT	1 cut(s)	1332
AsiGI	ACCGGT	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	70
AspA2I	CCTAGG	1 cut(s)	869
AspS9I	GGNCC	5 cut(s)	202, 755, 1084, 1326, 1473
AsuC2I	CCSGG	1 cut(s)	1470
AsuHPI	GGTGA	1 cut(s)	886
AsuNHI	GCTAGC	1 cut(s)	1049
AvaII	GGWCC	5 cut(s)	202, 755, 1084, 1326, 1473
AvrII	CCTAGG	1 cut(s)	869
BccI	CCATC	5 cut(s)	129, 257, 413, 633, 1124
BceAI	ACGGC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	1470
BcoDI	GTCTC	1 cut(s)	1440
BfaI	CTAG	4 cut(s)	870, 917, 1046, 1050
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	36, 721, 1450
BlnI	CCTAGG	1 cut(s)	869
BlsI	GCNGC	3 cut(s)	37, 722, 1451
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	1470
Bme18I	GGWCC	5 cut(s)	202, 755, 1084, 1326, 1473
BmgT120I	GGNCC	5 cut(s)	202, 755, 1084, 1326, 1473
BmiI	GGNNCC	4 cut(s)	119, 986, 1327, 1474
BmrFI	CCNGG	1 cut(s)	1470
BmrI	ACTGGG	2 cut(s)	360, 1408
BmsI	GCATC	4 cut(s)	18, 177, 459, 910
BmtI	GCTAGC	1 cut(s)	1053
BmuI	ACTGGG	2 cut(s)	360, 1408
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
Bpu10I	CCTNAGC	1 cut(s)	1160
BpuEI	CTTGAG	2 cut(s)	746, 1422
BpuMI	CCSGG	1 cut(s)	1470
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	75, 869, 1469
BsaWI	WCCGGW	2 cut(s)	821, 1482
BsaXI	ACNNNNNCTCC	2 cut(s)	1170, 1200
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1482
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	4 cut(s)	355, 895, 936, 1403
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	75, 869, 1469
BseGI	GGATG	5 cut(s)	28, 192, 328, 424, 628
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1482
BseMII	CTCAG	2 cut(s)	480, 1353
BseNI	ACTGG	4 cut(s)	355, 895, 936, 1403
BseRI	GAGGAG	2 cut(s)	146, 1022
BseX3I	CGGCCG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	87
BshTI	ACCGGT	1 cut(s)	821
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	6 cut(s)	84, 88, 160, 822, 1469, 1483
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	350, 1482
BsmAI	GTCTC	1 cut(s)	1440
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	2 cut(s)	72, 313
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
BspACI	CCGC	3 cut(s)	35, 721, 1449
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	481, 1352
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	119, 986, 1327, 1474
BspOI	GCTAGC	1 cut(s)	1053
BspPI	GGATC	4 cut(s)	377, 428, 519, 935
BsrFI	RCCGGY	1 cut(s)	821
BsrI	ACTGG	4 cut(s)	355, 895, 936, 1403
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	3 cut(s)	75, 869, 1469
BssMI	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
BssT1I	CCWWGG	1 cut(s)	869
Bst4CI	ACNGT	4 cut(s)	280, 451, 1100, 1253
Bst6I	CTCTTC	3 cut(s)	47, 167, 687
BstC8I	GCNNGC	4 cut(s)	553, 557, 592, 1051
BstDEI	CTNAG	6 cut(s)	489, 1120, 1160, 1304, 1339, 1518
BstF5I	GGATG	5 cut(s)	28, 192, 328, 424, 628
BstKTI	GATC	7 cut(s)	271, 385, 436, 514, 943, 1303, 1517
BstMAI	GTCTC	1 cut(s)	1440
BstMBI	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 1361
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	1 cut(s)	1468
BstX2I	RGATCY	3 cut(s)	268, 511, 1514
BstYI	RGATCY	3 cut(s)	268, 511, 1514
BstZI	CGGCCG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	5 cut(s)	28, 192, 328, 424, 628
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	4 cut(s)	321, 348, 888, 943
Cac8I	GCNNGC	4 cut(s)	553, 557, 592, 1051
CciI	TCATGA	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	202, 755, 1084, 1326, 1473
Csp6I	GTAC	3 cut(s)	60, 452, 914
CspAI	ACCGGT	1 cut(s)	821
CviQI	GTAC	3 cut(s)	60, 452, 914
DdeI	CTNAG	6 cut(s)	489, 1120, 1160, 1304, 1339, 1518
DpnI	GATC	7 cut(s)	270, 384, 435, 513, 942, 1302, 1516
DpnII	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
EaeI	YGGCCR	1 cut(s)	85
EagI	CGGCCG	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	47, 167, 687
EarI	CTCTTC	3 cut(s)	47, 167, 687
EclXI	CGGCCG	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	869
Eco47I	GGWCC	5 cut(s)	202, 755, 1084, 1326, 1473
Eco52I	CGGCCG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	869
EcoT22I	ATGCAT	3 cut(s)	432, 474, 1211
ErhI	CCWWGG	1 cut(s)	869
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	1 cut(s)	245
FauNDI	CATATG	2 cut(s)	391, 979
Fnu4HI	GCNGC	3 cut(s)	36, 721, 1450
FokI	GGATG	5 cut(s)	35, 199, 315, 431, 635
Fsp4HI	GCNGC	3 cut(s)	36, 721, 1450
FspBI	CTAG	4 cut(s)	870, 917, 1046, 1050
GluI	GCNGC	3 cut(s)	36, 721, 1450
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	6 cut(s)	84, 88, 160, 822, 1469, 1483
HincII	GTYRAC	2 cut(s)	340, 1396
HindII	GTYRAC	2 cut(s)	340, 1396
HinfI	GANTC	7 cut(s)	80, 600, 730, 807, 851, 1291, 1376
HpaII	CCGG	6 cut(s)	84, 88, 160, 822, 1469, 1483
HphI	GGTGA	1 cut(s)	886
Hpy166II	GTNNAC	4 cut(s)	340, 363, 1396, 1476
Hpy188III	TCNNGA	4 cut(s)	125, 466, 734, 763
Hpy8I	GTNNAC	4 cut(s)	340, 363, 1396, 1476
HpyAV	CCTTC	4 cut(s)	138, 328, 614, 1003
HpyCH4III	ACNGT	4 cut(s)	280, 451, 1100, 1253
HpyCH4IV	ACGT	1 cut(s)	610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 1361
HpyF3I	CTNAG	6 cut(s)	489, 1120, 1160, 1304, 1339, 1518
HpySE526I	ACGT	1 cut(s)	610
Kzo9I	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
LmnI	GCTCC	4 cut(s)	463, 1009, 1110, 1222
LweI	GCATC	4 cut(s)	18, 177, 459, 910
MaeI	CTAG	4 cut(s)	870, 917, 1046, 1050
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	2 cut(s)	394, 1000
MalI	GATC	7 cut(s)	270, 384, 435, 513, 942, 1302, 1516
MboI	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
MfeI	CAATTG	3 cut(s)	206, 951, 1013
MflI	RGATCY	3 cut(s)	268, 511, 1514
MlyI	GAGTC	2 cut(s)	609, 1285
MmeI	TCCRAC	2 cut(s)	270, 1053
Mph1103I	ATGCAT	3 cut(s)	432, 474, 1211
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	5 cut(s)	546, 710, 815, 1146, 1332
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	6 cut(s)	84, 88, 160, 822, 1469, 1483
MspR9I	CCNGG	1 cut(s)	1470
MunI	CAATTG	3 cut(s)	206, 951, 1013
Mva1269I	GAATGC	2 cut(s)	72, 313
MwoI	GCNNNNNNNGC	2 cut(s)	35, 1361
NciI	CCSGG	1 cut(s)	1470
NdeI	CATATG	2 cut(s)	391, 979
NdeII	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
NheI	GCTAGC	1 cut(s)	1049
NlaIV	GGNNCC	4 cut(s)	119, 986, 1327, 1474
NmuCI	GTSAC	2 cut(s)	394, 1000
NsiI	ATGCAT	3 cut(s)	432, 474, 1211
NspI	RCATGY	1 cut(s)	720
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	2 cut(s)	72, 313
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	5 cut(s)	80, 730, 807, 851, 1376
PflFI	GACNNNGTC	1 cut(s)	746
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	3 cut(s)	37, 722, 1451
PleI	GAGTC	2 cut(s)	608, 1285
PpsI	GAGTC	2 cut(s)	608, 1285
PshBI	ATTAAT	1 cut(s)	1332
PspN4I	GGNNCC	4 cut(s)	119, 986, 1327, 1474
PspPI	GGNCC	5 cut(s)	202, 755, 1084, 1326, 1473
PsuI	RGATCY	3 cut(s)	268, 511, 1514
PsyI	GACNNNGTC	1 cut(s)	746
RsaI	GTAC	3 cut(s)	61, 453, 915
RsaNI	GTAC	3 cut(s)	60, 452, 914
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	546, 710, 815, 1146, 1332
SatI	GCNGC	3 cut(s)	36, 721, 1450
Sau3AI	GATC	7 cut(s)	268, 382, 433, 511, 940, 1300, 1514
Sau96I	GGNCC	5 cut(s)	202, 755, 1084, 1326, 1473
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	2 cut(s)	609, 1285
ScrFI	CCNGG	1 cut(s)	1470
SfaNI	GCATC	4 cut(s)	18, 177, 459, 910
SinI	GGWCC	5 cut(s)	202, 755, 1084, 1326, 1473
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	725, 1437
SmoI	CTYRAG	2 cut(s)	725, 1437
SsiI	CCGC	3 cut(s)	35, 721, 1449
SspI	AATATT	1 cut(s)	1464
SspMI	CTAG	4 cut(s)	870, 917, 1046, 1050
StyD4I	CCNGG	1 cut(s)	1468
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	4 cut(s)	280, 451, 1100, 1253
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	64
TatI	WGTACW	2 cut(s)	59, 913
TauI	GCSGC	3 cut(s)	38, 723, 1452
TfiI	GAWTC	5 cut(s)	80, 730, 807, 851, 1376
Tru1I	TTAA	5 cut(s)	546, 710, 815, 1146, 1332
Tru9I	TTAA	5 cut(s)	546, 710, 815, 1146, 1332
TscAI	CASTG	4 cut(s)	328, 355, 895, 943
TseFI	GTSAC	2 cut(s)	394, 1000
Tsp45I	GTSAC	2 cut(s)	394, 1000
TspDTI	ATGAA	8 cut(s)	39, 152, 415, 496, 591, 652, 899, 1253
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	4 cut(s)	328, 355, 895, 943
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	5 cut(s)	202, 755, 1084, 1326, 1473
VspI	ATTAAT	1 cut(s)	1332
XapI	RAATTY	1 cut(s)	1285
XceI	RCATGY	1 cut(s)	720
XmaJI	CCTAGG	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	4 cut(s)	870, 917, 1046, 1050
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	3 cut(s)	432, 474, 1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.