Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Reverse (-)

41665 .. 43197

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAAATGGTATGTATAAAAAGAAAGGAGTGTGCGACTCTTGTGTCTCGTCCAAAAGCAGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCACCATCTCCTCATGGATTGGAACAAAGCTAATGATCTTCTCACACAAGAACACGCAGCTTTTCTCAATGATCCTCACCATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGACGAAGACGAAGAGTACGATGAAGACATGGATGCGATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCCGTAGACATCGACCCTGCCACGGTCCCTAAGCCGAACCGCCGTAACGTAAGGATAAGCGACGATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATTCTCAAGAGGATCGTGCCTGGTGGTGCGAAGATGGACACAGCTTCCATGCTCGACGAAGCCATACGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATTGGAGCTCCTATGGCTAACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

198

Amino Acids

22.95

Weight (kDa)

7.13

Isoelectric Point (pI)

69.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	127 - 167	4.9e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	129 - 171	3e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	7 cut(s)	57, 170, 191, 356, 406, 407, 437
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	2 cut(s)	242, 278
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	4 cut(s)	134, 164, 461, 545
AluI	AGCT	4 cut(s)	134, 164, 461, 545
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	7 cut(s)	57, 170, 191, 356, 406, 407, 437
ApeKI	GCWGC	2 cut(s)	161, 295
ApoI	RAATTY	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	98, 173, 523
AvaII	GGWCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	237, 255
Bbv12I	GWGCWC	1 cut(s)	547
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	173, 307
BccI	CCATC	4 cut(s)	85, 117, 192, 445
BceAI	ACGGC	3 cut(s)	272, 324, 521
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	2 cut(s)	162, 296
BlsI	GCNGC	2 cut(s)	163, 297
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	96, 324
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	247, 261
BpiI	GAAGAC	2 cut(s)	237, 255
Bpu10I	CCTNAGC	2 cut(s)	99, 327
BpuEI	CTTGAG	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	3 cut(s)	260, 290, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	113, 380, 548
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	173, 307
BsiHKAI	GWGCWC	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	112, 379, 547
BspLI	GGNNCC	2 cut(s)	96, 324
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	7 cut(s)	57, 170, 191, 356, 406, 407, 437
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
BssNI	GRCGYC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	322, 373
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	99, 327, 366, 534
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	9 cut(s)	65, 142, 178, 199, 285, 364, 402, 414, 432
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	173, 307
BstV2I	GAAGAC	2 cut(s)	237, 255
BstX2I	RGATCY	3 cut(s)	62, 196, 411
BstYI	RGATCY	3 cut(s)	62, 196, 411
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	241, 277
CviAII	CATG	7 cut(s)	88, 118, 190, 253, 280, 292, 466
CviQI	GTAC	2 cut(s)	241, 277
DdeI	CTNAG	4 cut(s)	99, 327, 366, 534
DpnI	GATC	9 cut(s)	64, 141, 177, 198, 284, 363, 401, 413, 431
DpnII	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	7 cut(s)	91, 121, 193, 256, 283, 295, 469
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	7 cut(s)	87, 117, 189, 252, 279, 291, 465
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	162, 296
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	162, 296
GluI	GCNGC	2 cut(s)	162, 296
HgaI	GACGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	7 cut(s)	91, 121, 193, 256, 283, 295, 469
HinfI	GANTC	2 cut(s)	38, 517
HphI	GGTGA	3 cut(s)	98, 173, 523
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	369, 416, 537
Hpy188III	TCNNGA	4 cut(s)	206, 392, 424, 499
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	4 cut(s)	362, 387, 393, 476
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	322, 373
HpyCH4IV	ACGT	2 cut(s)	345, 484
HpyCH4V	TGCA	2 cut(s)	274, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	4 cut(s)	99, 327, 366, 534
HpySE526I	ACGT	2 cut(s)	345, 484
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	7 cut(s)	91, 121, 193, 256, 283, 295, 469
Kzo9I	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
LmnI	GCTCC	3 cut(s)	94, 542, 550
LpnPI	CCDG	4 cut(s)	327, 423, 450, 494
Lsp1109I	GCAGC	2 cut(s)	173, 307
LweI	GCATC	2 cut(s)	247, 261
MaeII	ACGT	2 cut(s)	345, 484
MaeIII	GTNAC	2 cut(s)	341, 485
MalI	GATC	9 cut(s)	64, 141, 177, 198, 284, 363, 401, 413, 431
MboI	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
MboII	GAAGA	7 cut(s)	134, 242, 248, 260, 421, 460, 512
MflI	RGATCY	3 cut(s)	62, 196, 411
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	2 cut(s)	216, 417
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
NlaIII	CATG	7 cut(s)	91, 121, 193, 256, 283, 295, 469
NlaIV	GGNNCC	2 cut(s)	96, 324
PaqCI	CACCTGC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	163, 297
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	96, 324
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	62, 196, 411
RsaI	GTAC	2 cut(s)	242, 278
RsaNI	GTAC	2 cut(s)	241, 277
SacI	GAGCTC	1 cut(s)	547
SatI	GCNGC	2 cut(s)	162, 296
Sau3AI	GATC	9 cut(s)	62, 139, 175, 196, 282, 361, 399, 411, 429
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	9 cut(s)	136, 166, 205, 348, 463, 487, 513, 547, 570
SfaNI	GCATC	2 cut(s)	247, 261
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	216, 417
SsiI	CCGC	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	322, 373
TaiI	ACGT	2 cut(s)	348, 487
TaqI	TCGA	2 cut(s)	309, 471
TasI	AATT	2 cut(s)	216, 417
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	161, 295
TspDTI	ATGAA	2 cut(s)	261, 278
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.