Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Forward (+)

15965797 .. 15967652

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATCACACCAATTACTTAAACAATCAGCTGGGAAACAACCTTGTCTCAGCCGCCGGAGATCATCTCGAAGATCATGTGAGAATGGAAGATCCCATTCAGCTTCACCACCATCATCATCAACACCAAATTTCATACGACTCAGTTTGGCCGAACTTCCCTCTCCAACTACATCATCAAGTGCCCTCGTCATCCAGTACTCACCTTCATTATGATCAGTTTGGTCACCACGATCACGATCATCATCATCATCAACTAGTTCTACCTGGGAACTATAATAACTTTATGGATCAAGAAGATATTCATCATGAAGAGGAGCCGGGGGAAGAGGAAGAGGAGCTGGGAGCTATGAAGGAAATGATGTATAAGATCGCCGCGATGCAACCGGTGGATATCGACCCTGCCACAATCCGAAAGCCGAAAAGGAGGAACGTCCGAATCAGCGACGACCCGCAGAGCGTGGCTGCGCGTCACCGGCGGGAGAGGATAAGCGAGAAGATCCGGATCCTGCAAAGACTTGTTCCGGGGGGAACAAAAATGGACACAGCTTCCATGTTAGAGGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCCGCTTGCTACAACAGTCGAGTCATCATCATCCCCAGCCATGCATTAATGTTAACAACACTGGAGTACTACTTAGTAGCATACCTAGTGCAAGTAACGCTGCAGCGTTAGCCGGTGGTGGAGGGACGGCATTGGATTGGCTGCAGCCACCGCCTATTCATCCGCGTTCTGCCGCCACCTCCTCTTCCACGGAAACTCCGACAACCAGAGCAGCTCTTGGATTCACCGCCTTCGGAGTTAGCCGGGGAGATGTTGCAGCTTTGAGCTTCAATCATGAGGTACTTAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

297

Amino Acids

33.3

Weight (kDa)

6.19

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	156 - 197	1.6e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	158 - 201	6.4e-11	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	377, 469, 763
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	9 cut(s)	54, 375, 452, 478, 601, 749, 761, 771, 825
AclWI	GGATC	6 cut(s)	12, 86, 297, 493, 499, 512
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	3 cut(s)	199, 666, 879
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	589, 868
AhlI	ACTAGT	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	8 cut(s)	31, 103, 340, 347, 548, 812, 857, 864
AluI	AGCT	8 cut(s)	31, 103, 340, 347, 548, 812, 857, 864
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	6 cut(s)	12, 86, 297, 493, 499, 512
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	7 cut(s)	464, 698, 701, 739, 742, 809, 854
ApoI	RAATTY	1 cut(s)	129
AseI	ATTAAT	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	385
Asp700I	GAANNNNTTC	2 cut(s)	300, 567
AspLEI	GCGC	1 cut(s)	469
AsuC2I	CCSGG	3 cut(s)	321, 525, 842
AsuHPI	GGTGA	5 cut(s)	98, 194, 218, 464, 814
BaeGI	GKGCMC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	504
BbvI	GCAGC	7 cut(s)	451, 685, 713, 726, 754, 821, 866
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	3 cut(s)	321, 525, 842
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 684
BfmI	CTRYAG	2 cut(s)	699, 740
BmcAI	AGTACT	2 cut(s)	199, 666
Bme1390I	CCNGG	4 cut(s)	267, 321, 525, 842
BmiI	GGNNCC	2 cut(s)	318, 506
BmrFI	CCNGG	4 cut(s)	267, 321, 525, 842
BmsI	GCATC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	681
BpuMI	CCSGG	3 cut(s)	321, 525, 842
BsaBI	GATNNNNATC	4 cut(s)	237, 243, 303, 503
BsaJI	CCNNGG	5 cut(s)	266, 320, 524, 786, 841
BsaWI	WCCGGW	2 cut(s)	385, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bse118I	RCCGGY	3 cut(s)	385, 474, 710
Bse1I	ACTGG	2 cut(s)	195, 664
Bse8I	GATNNNNATC	4 cut(s)	237, 243, 303, 503
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	5 cut(s)	266, 320, 524, 786, 841
BseGI	GGATG	3 cut(s)	191, 628, 757
BseJI	GATNNNNATC	4 cut(s)	237, 243, 303, 503
BseMII	CTCAG	2 cut(s)	63, 156
BseNI	ACTGG	2 cut(s)	195, 664
BseRI	GAGGAG	3 cut(s)	329, 350, 769
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	7 cut(s)	451, 685, 713, 726, 754, 821, 866
BseYI	CCCAGC	3 cut(s)	31, 340, 633
Bsh1236I	CGCG	3 cut(s)	377, 469, 763
BshFI	GGCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	385
BsiSI	CCGG	8 cut(s)	57, 320, 386, 475, 502, 524, 711, 841
BslFI	GGGAC	1 cut(s)	736
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	501
BspACI	CCGC	9 cut(s)	54, 375, 452, 478, 601, 749, 761, 771, 825
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	62, 155
BspEI	TCCGGA	1 cut(s)	501
BspFNI	CGCG	3 cut(s)	377, 469, 763
BspHI	TCATGA	2 cut(s)	307, 871
BspLI	GGNNCC	2 cut(s)	318, 506
BspMAI	CTGCAG	2 cut(s)	703, 744
BspPI	GGATC	6 cut(s)	12, 86, 297, 493, 499, 512
BsrFI	RCCGGY	3 cut(s)	385, 474, 710
BsrI	ACTGG	2 cut(s)	195, 664
BssAI	RCCGGY	3 cut(s)	385, 474, 710
BssECI	CCNNGG	5 cut(s)	266, 320, 524, 786, 841
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	615
Bst6I	CTCTTC	5 cut(s)	306, 321, 327, 584, 787
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	4 cut(s)	49, 142, 671, 881
BstDSI	CCRYGG	1 cut(s)	786
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	191, 628, 757
BstFNI	CGCG	3 cut(s)	377, 469, 763
BstHHI	GCGC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	475, 695, 707, 748
BstNI	CCWGG	1 cut(s)	267
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	4 cut(s)	265, 319, 523, 840
BstSFI	CTRYAG	2 cut(s)	699, 740
BstSLI	GKGCMC	1 cut(s)	186
BstUI	CGCG	3 cut(s)	377, 469, 763
BstV1I	GCAGC	7 cut(s)	451, 685, 713, 726, 754, 821, 866
BstX2I	RGATCY	3 cut(s)	91, 498, 504
BstYI	RGATCY	3 cut(s)	91, 498, 504
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	786
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	191, 628, 757
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	605
CciI	TCATGA	2 cut(s)	307, 871
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	3 cut(s)	385, 474, 710
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	198, 665, 878
CspAI	ACCGGT	1 cut(s)	385
CviAII	CATG	5 cut(s)	77, 308, 553, 639, 872
CviQI	GTAC	3 cut(s)	198, 665, 878
DdeI	CTNAG	4 cut(s)	49, 142, 671, 881
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	5 cut(s)	306, 321, 327, 584, 787
EarI	CTCTTC	5 cut(s)	306, 321, 327, 584, 787
Eco32I	GATATC	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	644
FaeI	CATG	5 cut(s)	80, 311, 556, 642, 875
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	5 cut(s)	76, 307, 552, 638, 871
FauI	CCCGC	2 cut(s)	459, 471
FbaI	TGATCA	1 cut(s)	214
FokI	GGATG	3 cut(s)	178, 615, 744
FspBI	CTAG	2 cut(s)	257, 684
GlaI	GCGC	1 cut(s)	468
GsaI	CCCAGC	3 cut(s)	35, 344, 637
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	8 cut(s)	57, 320, 386, 475, 502, 524, 711, 841
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	5 cut(s)	80, 311, 556, 642, 875
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	4 cut(s)	140, 438, 619, 819
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	8 cut(s)	57, 320, 386, 475, 502, 524, 711, 841
HphI	GGTGA	5 cut(s)	98, 194, 218, 464, 814
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	4 cut(s)	413, 437, 798, 833
Hpy188III	TCNNGA	7 cut(s)	68, 236, 293, 308, 502, 586, 872
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	3 cut(s)	215, 346, 838
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	7 cut(s)	382, 511, 642, 689, 701, 742, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	475, 695, 707, 748
HpyF3I	CTNAG	4 cut(s)	49, 142, 671, 881
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	80, 311, 556, 642, 875
HspAI	GCGC	1 cut(s)	467
Kpn2I	TCCGGA	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	214
KspAI	GTTAAC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	316, 337, 344
Lsp1109I	GCAGC	7 cut(s)	451, 685, 713, 726, 754, 821, 866
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	257, 684
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	224, 470, 692
MboII	GAAGA	9 cut(s)	83, 101, 308, 323, 338, 344, 508, 601, 774
MflI	RGATCY	3 cut(s)	91, 498, 504
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	13, 129
MlyI	GAGTC	2 cut(s)	134, 628
MmeI	TCCRAC	2 cut(s)	190, 821
Mph1103I	ATGCAT	1 cut(s)	644
MroI	TCCGGA	1 cut(s)	501
MroXI	GAANNNNTTC	2 cut(s)	300, 567
MseI	TTAA	4 cut(s)	20, 645, 651, 889
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	8 cut(s)	57, 320, 386, 475, 502, 524, 711, 841
MspR9I	CCNGG	4 cut(s)	267, 321, 525, 842
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	3 cut(s)	377, 469, 763
MwoI	GCNNNNNNNGC	4 cut(s)	475, 695, 707, 748
NciI	CCSGG	3 cut(s)	321, 525, 842
NlaIII	CATG	5 cut(s)	80, 311, 556, 642, 875
NlaIV	GGNNCC	2 cut(s)	318, 506
NmuCI	GTSAC	2 cut(s)	224, 470
NsiI	ATGCAT	1 cut(s)	644
PagI	TCATGA	2 cut(s)	307, 871
PcsI	WCGNNNNNNNCGW	1 cut(s)	794
PdmI	GAANNNNTTC	2 cut(s)	300, 567
PfeI	GAWTC	2 cut(s)	438, 819
PinAI	ACCGGT	1 cut(s)	385
PleI	GAGTC	2 cut(s)	134, 627
PpsI	GAGTC	2 cut(s)	134, 627
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	3 cut(s)	31, 340, 633
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	318, 506
PstI	CTGCAG	2 cut(s)	703, 744
PsuI	RGATCY	3 cut(s)	91, 498, 504
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	199, 666, 879
RsaNI	GTAC	3 cut(s)	198, 665, 878
SaqAI	TTAA	4 cut(s)	20, 645, 651, 889
ScaI	AGTACT	2 cut(s)	199, 666
SchI	GAGTC	2 cut(s)	134, 628
ScrFI	CCNGG	4 cut(s)	267, 321, 525, 842
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	2 cut(s)	699, 740
SgrAI	CRCCGGYG	1 cut(s)	474
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	2 cut(s)	13, 129
SsiI	CCGC	9 cut(s)	54, 375, 452, 478, 601, 749, 761, 771, 825
SspMI	CTAG	2 cut(s)	257, 684
StyD4I	CCNGG	4 cut(s)	265, 319, 523, 840
TaaI	ACNGT	1 cut(s)	615
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	69, 396, 617
TasI	AATT	2 cut(s)	13, 129
TatI	WGTACW	2 cut(s)	197, 664
TauI	GCSGC	3 cut(s)	56, 377, 773
TfiI	GAWTC	2 cut(s)	438, 819
Tru1I	TTAA	4 cut(s)	20, 645, 651, 889
Tru9I	TTAA	4 cut(s)	20, 645, 651, 889
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	224, 470
TseI	GCWGC	7 cut(s)	464, 698, 701, 739, 742, 809, 854
Tsp45I	GTSAC	2 cut(s)	224, 470
TspDTI	ATGAA	6 cut(s)	123, 197, 293, 324, 365, 746
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	1 cut(s)	664
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	300, 567
XspI	CTAG	2 cut(s)	257, 684
ZrmI	AGTACT	2 cut(s)	199, 666
Zsp2I	ATGCAT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.