Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Reverse (-)

22651151 .. 22651566

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGAAGTTTTTGACCATCTTAAATGCACAAAAGATGGTTTGAGCTCTGATGAAGTTAAAGAGCGGTTGAATTTATTTGGTTATAATAAGCTTGAAGAAAAGAAGGAAAGCAAACTTTTGAAGTTTTTGGGCTTTATGTGGAATCCTCTGTCCTGGTTCATGGAAGCTGCAGCTATCCTAGCCATTGTTTTTAGCCAAGGAGGGGCAAATCTACACTATAACCCTTGCTCCTCTTTTTTTTCCTTATTTTTCCCCTCTCTTCCTGTAGAGTACAAAGTGTTGAAAACAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

99

Amino Acids

11.5

Weight (kDa)

7.76

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	1 - 61	1.5e-15	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccBSI	CCGCTC	1 cut(s)	67
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	73, 98, 124, 286
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	4 cut(s)	48, 94, 170, 176
AluI	AGCT	4 cut(s)	48, 94, 170, 176
Alw21I	GWGCWC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	170, 173
ApoI	RAATTY	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	157, 185
BccI	CCATC	2 cut(s)	27, 32
BciT130I	CCWGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	2 cut(s)	171, 267
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	157, 185
BsiHKAI	GWGCWC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	171, 267
BstV1I	GCAGC	2 cut(s)	157, 185
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	7 cut(s)	48, 94, 135, 170, 176, 185, 198
CviKI_1	RGCY	7 cut(s)	48, 94, 135, 170, 176, 185, 198
CviQI	GTAC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	87, 140, 164, 222
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	171, 174
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	171, 174
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	171, 174
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	100, 288
HpyCH4V	TGCA	2 cut(s)	30, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	3 cut(s)	142, 169, 279
Lsp1109I	GCAGC	2 cut(s)	157, 185
MaeI	CTAG	1 cut(s)	182
MbiI	CCGCTC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	17, 110, 254
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	4 cut(s)	159, 197, 244, 268
MseI	TTAA	2 cut(s)	24, 60
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	172, 175
PsiI	TTATAA	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	24, 60
SatI	GCNGC	2 cut(s)	171, 174
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	50, 96, 172, 178, 299
SfcI	CTRYAG	2 cut(s)	171, 267
SgeI	CNNG	8 cut(s)	107, 168, 169, 175, 194, 212, 240, 278
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	199
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	24, 60
Tru9I	TTAA	2 cut(s)	24, 60
TseI	GCWGC	2 cut(s)	170, 173
TspDTI	ATGAA	2 cut(s)	69, 151
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.