Helix-loop-helix DNA-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00120 AT5G09750 |
| fragaria_vesca | FvH4_1g24110 |
| malus_domestica | MD01G1002500.v1.1 |
| prunus_persica | Prupe.6G159200_v2.0.a1 |
| pyrus_communis | pycom01g02490 |
| rosa_chinensis | RchiOBHm_Chr2g0120331 |
| rosa_laevigata | RLG00000018548 |
| rosa_multiflora | Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00123560 |
| rosa_rugosa | Rorug02G0228500 |
| rosa_samantha | Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800 |
| rosa_wichuraiana | Rw2G022860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1433 |
| Acc65I | GGTACC | 1 cut(s) | 282 |
| AccB1I | GGYRCC | 2 cut(s) | 282, 741 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3247 |
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| AclWI | GGATC | 8 cut(s) | 1314, 1327, 2582, 2790, 2807, 3164, 3179, 3230 |
| AcoI | YGGCCR | 6 cut(s) | 190, 916, 927, 1849, 2864, 3587 |
| AcsI | RAATTY | 6 cut(s) | 133, 589, 2120, 2321, 2704, 3285 |
| AcvI | CACGTG | 1 cut(s) | 1844 |
| AcyI | GRCGYC | 1 cut(s) | 742 |
| AflIII | ACRYGT | 3 cut(s) | 565, 909, 1489 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 301 |
| AhlI | ACTAGT | 2 cut(s) | 1078, 3652 |
| AjnI | CCWGG | 2 cut(s) | 883, 3096 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3111, 3143, 3291, 3323 |
| Alw21I | GWGCWC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| Alw26I | GTCTC | 3 cut(s) | 377, 1344, 2763 |
| Alw44I | GTGCAC | 2 cut(s) | 1332, 1820 |
| AlwI | GGATC | 8 cut(s) | 1314, 1327, 2582, 2790, 2807, 3164, 3179, 3230 |
| Ama87I | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| ApaLI | GTGCAC | 2 cut(s) | 1332, 1820 |
| ApoI | RAATTY | 6 cut(s) | 133, 589, 2120, 2321, 2704, 3285 |
| AseI | ATTAAT | 3 cut(s) | 2192, 3528, 3677 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3354 |
| Asp718I | GGTACC | 1 cut(s) | 282 |
| AspLEI | GCGC | 5 cut(s) | 744, 900, 945, 1039, 3256 |
| AspS9I | GGNCC | 9 cut(s) | 222, 254, 321, 1710, 1870, 1914, 2069, 2424, 3533 |
| AsuC2I | CCSGG | 5 cut(s) | 307, 1287, 1748, 1874, 3312 |
| AvaI | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| AvaII | GGWCC | 7 cut(s) | 222, 321, 1710, 1870, 1914, 2069, 2424 |
| AxyI | CCTNAGG | 1 cut(s) | 622 |
| BaeGI | GKGCMC | 2 cut(s) | 1336, 1824 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3421, 3454 |
| BalI | TGGCCA | 1 cut(s) | 2866 |
| BamHI | GGATCC | 1 cut(s) | 1319 |
| BanI | GGYRCC | 2 cut(s) | 282, 741 |
| BanII | GRGCYC | 2 cut(s) | 1272, 1474 |
| BauI | CACGAG | 3 cut(s) | 465, 1435, 1495 |
| BbrPI | CACGTG | 1 cut(s) | 1844 |
| BbsI | GAAGAC | 1 cut(s) | 768 |
| Bbv12I | GWGCWC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1421, 1455 |
| BciT130I | CCWGG | 2 cut(s) | 885, 3098 |
| BciVI | GTATCC | 2 cut(s) | 3302, 3322 |
| BclI | TGATCA | 8 cut(s) | 2685, 2794, 2959, 2965, 3076, 3088, 3463, 3505 |
| BcnI | CCSGG | 5 cut(s) | 307, 1287, 1748, 1874, 3312 |
| BcoDI | GTCTC | 3 cut(s) | 377, 1344, 2763 |
| BcuI | ACTAGT | 2 cut(s) | 1078, 3652 |
| BfmI | CTRYAG | 5 cut(s) | 1357, 3039, 3480, 3561, 3685 |
| BfoI | RGCGCY | 1 cut(s) | 745 |
| BfuAI | ACCTGC | 1 cut(s) | 1433 |
| BfuI | GTATCC | 2 cut(s) | 3302, 3322 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3211 |
| BglII | AGATCT | 2 cut(s) | 262, 2832 |
| BmcAI | AGTACT | 4 cut(s) | 553, 1501, 1614, 3024 |
| Bme1390I | CCNGG | 7 cut(s) | 307, 885, 1287, 1748, 1874, 3098, 3312 |
| Bme18I | GGWCC | 7 cut(s) | 222, 321, 1710, 1870, 1914, 2069, 2424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 301 |
| BmeT110I | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| BmgT120I | GGNCC | 9 cut(s) | 222, 254, 321, 1710, 1870, 1914, 2069, 2424, 3533 |
| BmiI | GGNNCC | 8 cut(s) | 284, 743, 1321, 1367, 1429, 2425, 2426, 3604 |
| BmrFI | CCNGG | 7 cut(s) | 307, 885, 1287, 1748, 1874, 3098, 3312 |
| BmrI | ACTGGG | 1 cut(s) | 715 |
| BmsI | GCATC | 4 cut(s) | 859, 1248, 2703, 2902 |
| BmuI | ACTGGG | 1 cut(s) | 715 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1868 |
| BpiI | GAAGAC | 1 cut(s) | 768 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 361, 393, 2822, 2854 |
| BpmI | CTGGAG | 1 cut(s) | 777 |
| BpuMI | CCSGG | 5 cut(s) | 307, 1287, 1748, 1874, 3312 |
| Bsa29I | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| BsaAI | YACGTR | 2 cut(s) | 568, 1844 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2787, 2964, 2985, 3447 |
| BsaHI | GRCGYC | 1 cut(s) | 742 |
| BsaI | GGTCTC | 1 cut(s) | 1344 |
| BsaJI | CCNNGG | 6 cut(s) | 924, 1027, 1285, 1746, 1768, 2256 |
| BsaWI | WCCGGW | 3 cut(s) | 2644, 3387, 3619 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3086, 3116 |
| Bse118I | RCCGGY | 3 cut(s) | 929, 2710, 3172 |
| Bse1I | ACTGG | 3 cut(s) | 721, 3118, 3417 |
| Bse21I | CCTNAGG | 1 cut(s) | 622 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2787, 2964, 2985, 3447 |
| BseBI | CCWGG | 2 cut(s) | 885, 3098 |
| BseCI | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| BseDI | CCNNGG | 6 cut(s) | 924, 1027, 1285, 1746, 1768, 2256 |
| BseGI | GGATG | 5 cut(s) | 346, 2464, 2817, 2906, 3628 |
| BseJI | GATNNNNATC | 4 cut(s) | 2787, 2964, 2985, 3447 |
| BseMII | CTCAG | 2 cut(s) | 1532, 2394 |
| BseNI | ACTGG | 3 cut(s) | 721, 3118, 3417 |
| BseRI | GAGGAG | 5 cut(s) | 2528, 2827, 2830, 2902, 3400 |
| BseSI | GKGCMC | 2 cut(s) | 1336, 1824 |
| BseYI | CCCAGC | 1 cut(s) | 3475 |
| BsgI | GTGCAG | 2 cut(s) | 1461, 1738 |
| Bsh1236I | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| BshNI | GGYRCC | 2 cut(s) | 282, 741 |
| BshVI | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| BsiHKAI | GWGCWC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| BsiHKCI | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| BslFI | GGGAC | 3 cut(s) | 289, 350, 2410 |
| BsmAI | GTCTC | 3 cut(s) | 377, 1344, 2763 |
| BsmFI | GGGAC | 3 cut(s) | 289, 350, 2410 |
| BsmI | GAATGC | 2 cut(s) | 1521, 1855 |
| Bso31I | GGTCTC | 1 cut(s) | 1344 |
| BsoBI | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| Bsp1286I | GDGCHC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| Bsp1407I | TGTACA | 1 cut(s) | 3150 |
| BspCNI | CTCAG | 2 cut(s) | 1533, 2393 |
| BspDI | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| BspFNI | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| BspHI | TCATGA | 4 cut(s) | 2791, 2956, 2962, 3502 |
| BspLI | GGNNCC | 8 cut(s) | 284, 743, 1321, 1367, 1429, 2425, 2426, 3604 |
| BspMAI | CTGCAG | 3 cut(s) | 3043, 3484, 3565 |
| BspMI | ACCTGC | 1 cut(s) | 1433 |
| BspPI | GGATC | 8 cut(s) | 1314, 1327, 2582, 2790, 2807, 3164, 3179, 3230 |
| BspQI | GCTCTTC | 1 cut(s) | 3117 |
| BspT107I | GGYRCC | 2 cut(s) | 282, 741 |
| BspTNI | GGTCTC | 1 cut(s) | 1344 |
| BsrFI | RCCGGY | 3 cut(s) | 929, 2710, 3172 |
| BsrGI | TGTACA | 1 cut(s) | 3150 |
| BsrI | ACTGG | 3 cut(s) | 721, 3118, 3417 |
| BssAI | RCCGGY | 3 cut(s) | 929, 2710, 3172 |
| BssECI | CCNNGG | 6 cut(s) | 924, 1027, 1285, 1746, 1768, 2256 |
| BssNI | GRCGYC | 1 cut(s) | 742 |
| BssSI | CACGAG | 3 cut(s) | 465, 1435, 1495 |
| BssT1I | CCWWGG | 3 cut(s) | 924, 1768, 2256 |
| Bst2BI | CACGAG | 3 cut(s) | 465, 1435, 1495 |
| Bst2UI | CCWGG | 2 cut(s) | 885, 3098 |
| Bst4CI | ACNGT | 4 cut(s) | 556, 1819, 1955, 2235 |
| Bst6I | CTCTTC | 4 cut(s) | 2773, 3117, 3371, 3418 |
| BstACI | GRCGYC | 1 cut(s) | 742 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2370 |
| BstAUI | TGTACA | 1 cut(s) | 3150 |
| BstBAI | YACGTR | 2 cut(s) | 568, 1844 |
| BstC8I | GCNNGC | 6 cut(s) | 896, 931, 1853, 2371, 2375, 2777 |
| BstDEI | CTNAG | 5 cut(s) | 476, 622, 1541, 1805, 2380 |
| BstEII | GGTNACC | 1 cut(s) | 1379 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3561 |
| BstF5I | GGATG | 5 cut(s) | 346, 2464, 2817, 2906, 3628 |
| BstFNI | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| BstH2I | RGCGCY | 1 cut(s) | 745 |
| BstHHI | GCGC | 5 cut(s) | 744, 900, 945, 1039, 3256 |
| BstMAI | GTCTC | 3 cut(s) | 377, 1344, 2763 |
| BstNI | CCWGG | 2 cut(s) | 885, 3098 |
| BstNSI | RCATGY | 2 cut(s) | 1281, 1493 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1868 |
| BstPI | GGTNACC | 1 cut(s) | 1379 |
| BstSCI | CCNGG | 7 cut(s) | 305, 883, 1285, 1746, 1872, 3096, 3310 |
| BstSFI | CTRYAG | 5 cut(s) | 1357, 3039, 3480, 3561, 3685 |
| BstSLI | GKGCMC | 2 cut(s) | 1336, 1824 |
| BstUI | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| BstV2I | GAAGAC | 1 cut(s) | 768 |
| BstX2I | RGATCY | 5 cut(s) | 262, 1319, 2782, 2812, 2832 |
| BstYI | RGATCY | 5 cut(s) | 262, 1319, 2782, 2812, 2832 |
| Bsu15I | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 622 |
| BsuI | GTATCC | 2 cut(s) | 3302, 3322 |
| BsuTUI | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| BtsCI | GGATG | 5 cut(s) | 346, 2464, 2817, 2906, 3628 |
| BtsI | GCAGTG | 1 cut(s) | 2319 |
| BtsIMutI | CAGTG | 5 cut(s) | 1815, 2319, 2333, 3235, 3515 |
| BveI | ACCTGC | 1 cut(s) | 1433 |
| Cac8I | GCNNGC | 6 cut(s) | 896, 931, 1853, 2371, 2375, 2777 |
| CciI | TCATGA | 4 cut(s) | 2791, 2956, 2962, 3502 |
| CfoI | GCGC | 5 cut(s) | 744, 900, 945, 1039, 3256 |
| Cfr10I | RCCGGY | 3 cut(s) | 929, 2710, 3172 |
| Cfr13I | GGNCC | 9 cut(s) | 222, 254, 321, 1710, 1870, 1914, 2069, 2424, 3533 |
| ClaI | ATCGAT | 3 cut(s) | 2979, 3183, 3441 |
| CpoI | CGGWCCG | 1 cut(s) | 1870 |
| CseI | GACGC | 2 cut(s) | 1248, 3245 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 895, 930 |
| CspI | CGGWCCG | 1 cut(s) | 1870 |
| DdeI | CTNAG | 5 cut(s) | 476, 622, 1541, 1805, 2380 |
| DinI | GGCGCC | 1 cut(s) | 743 |
| DraI | TTTAAA | 1 cut(s) | 1161 |
| DriI | GACNNNNNGTC | 1 cut(s) | 301 |
| EaeI | YGGCCR | 6 cut(s) | 190, 916, 927, 1849, 2864, 3587 |
| Eam1104I | CTCTTC | 4 cut(s) | 2773, 3117, 3371, 3418 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 301 |
| EarI | CTCTTC | 4 cut(s) | 2773, 3117, 3371, 3418 |
| EciI | GGCGGA | 1 cut(s) | 3229 |
| Ecl136II | GAGCTC | 2 cut(s) | 1270, 1472 |
| Eco130I | CCWWGG | 3 cut(s) | 924, 1768, 2256 |
| Eco147I | AGGCCT | 1 cut(s) | 3101 |
| Eco24I | GRGCYC | 2 cut(s) | 1272, 1474 |
| Eco31I | GGTCTC | 1 cut(s) | 1344 |
| Eco47I | GGWCC | 7 cut(s) | 222, 321, 1710, 1870, 1914, 2069, 2424 |
| Eco53kI | GAGCTC | 2 cut(s) | 1270, 1472 |
| Eco72I | CACGTG | 1 cut(s) | 1844 |
| Eco81I | CCTNAGG | 1 cut(s) | 622 |
| Eco88I | CYCGRG | 6 cut(s) | 367, 532, 631, 1026, 1046, 1667 |
| Eco91I | GGTNACC | 1 cut(s) | 1379 |
| EcoICRI | GAGCTC | 2 cut(s) | 1270, 1472 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3561 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2424 |
| EcoO65I | GGTNACC | 1 cut(s) | 1379 |
| EcoRII | CCWGG | 2 cut(s) | 883, 3096 |
| EcoT14I | CCWWGG | 3 cut(s) | 924, 1768, 2256 |
| EcoT22I | ATGCAT | 3 cut(s) | 1198, 1263, 2036 |
| EcoT38I | GRGCYC | 2 cut(s) | 1272, 1474 |
| EgeI | GGCGCC | 1 cut(s) | 743 |
| EheI | GGCGCC | 1 cut(s) | 743 |
| ErhI | CCWWGG | 3 cut(s) | 924, 1768, 2256 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 497, 529, 3111, 3143 |
| FaqI | GGGAC | 3 cut(s) | 289, 350, 2410 |
| FauI | CCCGC | 5 cut(s) | 1309, 1392, 2280, 2768, 3496 |
| FbaI | TGATCA | 8 cut(s) | 2685, 2794, 2959, 2965, 3076, 3088, 3463, 3505 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| FokI | GGATG | 5 cut(s) | 333, 2451, 2804, 2893, 3635 |
| FriOI | GRGCYC | 2 cut(s) | 1272, 1474 |
| GlaI | GCGC | 5 cut(s) | 743, 899, 944, 1038, 3255 |
| GsaI | CCCAGC | 1 cut(s) | 3479 |
| GsuI | CTGGAG | 1 cut(s) | 777 |
| HaeII | RGCGCY | 1 cut(s) | 745 |
| HgaI | GACGC | 2 cut(s) | 1248, 3245 |
| HhaI | GCGC | 5 cut(s) | 744, 900, 945, 1039, 3256 |
| Hin1I | GRCGYC | 1 cut(s) | 742 |
| Hin6I | GCGC | 5 cut(s) | 742, 898, 943, 1037, 3254 |
| HinP1I | GCGC | 5 cut(s) | 742, 898, 943, 1037, 3254 |
| HincII | GTYRAC | 1 cut(s) | 816 |
| HindII | GTYRAC | 1 cut(s) | 816 |
| HindIII | AAGCTT | 2 cut(s) | 1630, 2589 |
| HpaI | GTTAAC | 1 cut(s) | 816 |
| Hpy166II | GTNNAC | 8 cut(s) | 13, 402, 816, 1334, 1822, 2240, 2680, 3178 |
| Hpy188I | TCNGA | 7 cut(s) | 1432, 1542, 1689, 1918, 3200, 3459, 3674 |
| Hpy8I | GTNNAC | 8 cut(s) | 13, 402, 816, 1334, 1822, 2240, 2680, 3178 |
| Hpy99I | CGWCG | 4 cut(s) | 735, 738, 741, 770 |
| HpyAV | CCTTC | 6 cut(s) | 523, 600, 1078, 2440, 2592, 3133 |
| HpyCH4III | ACNGT | 4 cut(s) | 556, 1819, 1955, 2235 |
| HpyCH4IV | ACGT | 8 cut(s) | 239, 429, 567, 953, 1832, 1843, 2014, 3363 |
| HpyF3I | CTNAG | 5 cut(s) | 476, 622, 1541, 1805, 2380 |
| HpySE526I | ACGT | 8 cut(s) | 239, 429, 567, 953, 1832, 1843, 2014, 3363 |
| Hsp92I | GRCGYC | 1 cut(s) | 742 |
| HspAI | GCGC | 5 cut(s) | 742, 898, 943, 1037, 3254 |
| KasI | GGCGCC | 1 cut(s) | 741 |
| KflI | GGGWCCC | 1 cut(s) | 2424 |
| KpnI | GGTACC | 1 cut(s) | 286 |
| KroI | GCCGGC | 1 cut(s) | 929 |
| KroNI | GCCGGC | 1 cut(s) | 931 |
| Ksp22I | TGATCA | 8 cut(s) | 2685, 2794, 2959, 2965, 3076, 3088, 3463, 3505 |
| KspAI | GTTAAC | 1 cut(s) | 816 |
| LguI | GCTCTTC | 1 cut(s) | 3117 |
| LmnI | GCTCC | 3 cut(s) | 33, 1303, 3131 |
| LweI | GCATC | 4 cut(s) | 859, 1248, 2703, 2902 |
| MaeII | ACGT | 8 cut(s) | 239, 429, 567, 953, 1832, 1843, 2014, 3363 |
| MfeI | CAATTG | 1 cut(s) | 2595 |
| MflI | RGATCY | 5 cut(s) | 262, 1319, 2782, 2812, 2832 |
| MhlI | GDGCHC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| MlsI | TGGCCA | 1 cut(s) | 2866 |
| MluI | ACGCGT | 1 cut(s) | 909 |
| MluNI | TGGCCA | 1 cut(s) | 2866 |
| Mly113I | GGCGCC | 1 cut(s) | 742 |
| MlyI | GAGTC | 3 cut(s) | 379, 1427, 3297 |
| MmeI | TCCRAC | 7 cut(s) | 1393, 1440, 1455, 2552, 2681, 3529, 3561 |
| Mox20I | TGGCCA | 1 cut(s) | 2866 |
| Mph1103I | ATGCAT | 3 cut(s) | 1198, 1263, 2036 |
| MroNI | GCCGGC | 1 cut(s) | 929 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3354 |
| MscI | TGGCCA | 1 cut(s) | 2866 |
| MslI | CAYNNNNRTG | 9 cut(s) | 291, 956, 1079, 1152, 2796, 2931, 2961, 3084, 3459 |
| Msp20I | TGGCCA | 1 cut(s) | 2866 |
| MspA1I | CMGCKG | 3 cut(s) | 3038, 3479, 3644 |
| MspR9I | CCNGG | 7 cut(s) | 307, 885, 1287, 1748, 1874, 3098, 3312 |
| MunI | CAATTG | 1 cut(s) | 2595 |
| Mva1269I | GAATGC | 2 cut(s) | 1521, 1855 |
| MvaI | CCWGG | 2 cut(s) | 885, 3098 |
| MvnI | CGCG | 6 cut(s) | 900, 911, 945, 1387, 3256, 3267 |
| NaeI | GCCGGC | 1 cut(s) | 931 |
| NarI | GGCGCC | 1 cut(s) | 742 |
| NciI | CCSGG | 5 cut(s) | 307, 1287, 1748, 1874, 3312 |
| NgoMIV | GCCGGC | 1 cut(s) | 929 |
| NlaIV | GGNNCC | 8 cut(s) | 284, 743, 1321, 1367, 1429, 2425, 2426, 3604 |
| NmuCI | GTSAC | 7 cut(s) | 293, 1041, 1379, 1492, 1833, 1844, 3257 |
| NsiI | ATGCAT | 3 cut(s) | 1198, 1263, 2036 |
| NspI | RCATGY | 2 cut(s) | 1281, 1493 |
| PaeR7I | CTCGAG | 3 cut(s) | 532, 1046, 1667 |
| PagI | TCATGA | 4 cut(s) | 2791, 2956, 2962, 3502 |
| PceI | AGGCCT | 1 cut(s) | 3101 |
| PciI | ACATGT | 1 cut(s) | 1489 |
| PciSI | GCTCTTC | 1 cut(s) | 3117 |
| PctI | GAATGC | 2 cut(s) | 1521, 1855 |
| PdiI | GCCGGC | 1 cut(s) | 931 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3354 |
| PfeI | GAWTC | 8 cut(s) | 673, 827, 1465, 1674, 1923, 2092, 2143, 3225 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3247 |
| PfoI | TCCNGGA | 2 cut(s) | 305, 3310 |
| PleI | GAGTC | 3 cut(s) | 378, 1427, 3297 |
| PluTI | GGCGCC | 1 cut(s) | 745 |
| PmaCI | CACGTG | 1 cut(s) | 1844 |
| PmlI | CACGTG | 1 cut(s) | 1844 |
| PpsI | GAGTC | 3 cut(s) | 378, 1427, 3297 |
| Ppu21I | YACGTR | 2 cut(s) | 568, 1844 |
| PpuMI | RGGWCCY | 1 cut(s) | 2424 |
| PscI | ACATGT | 1 cut(s) | 1489 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1868 |
| PshBI | ATTAAT | 3 cut(s) | 2192, 3528, 3677 |
| Psp124BI | GAGCTC | 2 cut(s) | 1272, 1474 |
| Psp5II | RGGWCCY | 1 cut(s) | 2424 |
| Psp6I | CCWGG | 2 cut(s) | 883, 3096 |
| PspCI | CACGTG | 1 cut(s) | 1844 |
| PspEI | GGTNACC | 1 cut(s) | 1379 |
| PspFI | CCCAGC | 1 cut(s) | 3475 |
| PspGI | CCWGG | 2 cut(s) | 883, 3096 |
| PspN4I | GGNNCC | 8 cut(s) | 284, 743, 1321, 1367, 1429, 2425, 2426, 3604 |
| PspPI | GGNCC | 9 cut(s) | 222, 254, 321, 1710, 1870, 1914, 2069, 2424, 3533 |
| PspPPI | RGGWCCY | 1 cut(s) | 2424 |
| PspXI | VCTCGAGB | 1 cut(s) | 1046 |
| PstI | CTGCAG | 3 cut(s) | 3043, 3484, 3565 |
| PsuI | RGATCY | 5 cut(s) | 262, 1319, 2782, 2812, 2832 |
| PvuII | CAGCTG | 2 cut(s) | 3479, 3644 |
| RseI | CAYNNNNRTG | 9 cut(s) | 291, 956, 1079, 1152, 2796, 2931, 2961, 3084, 3459 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1870 |
| RsrII | CGGWCCG | 1 cut(s) | 1870 |
| SacI | GAGCTC | 2 cut(s) | 1272, 1474 |
| SapI | GCTCTTC | 1 cut(s) | 3117 |
| Sau96I | GGNCC | 9 cut(s) | 222, 254, 321, 1710, 1870, 1914, 2069, 2424, 3533 |
| ScaI | AGTACT | 4 cut(s) | 553, 1501, 1614, 3024 |
| SchI | GAGTC | 3 cut(s) | 379, 1427, 3297 |
| ScrFI | CCNGG | 7 cut(s) | 307, 885, 1287, 1748, 1874, 3098, 3312 |
| SduI | GDGCHC | 7 cut(s) | 466, 953, 1272, 1300, 1336, 1474, 1824 |
| SfaNI | GCATC | 4 cut(s) | 859, 1248, 2703, 2902 |
| SfcI | CTRYAG | 5 cut(s) | 1357, 3039, 3480, 3561, 3685 |
| SfoI | GGCGCC | 1 cut(s) | 743 |
| Sfr274I | CTCGAG | 3 cut(s) | 532, 1046, 1667 |
| SinI | GGWCC | 7 cut(s) | 222, 321, 1710, 1870, 1914, 2069, 2424 |
| SlaI | CTCGAG | 3 cut(s) | 532, 1046, 1667 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 291, 956, 1079, 1152, 2796, 2931, 2961, 3084, 3459 |
| SmlI | CTYRAG | 3 cut(s) | 532, 1046, 1667 |
| SmoI | CTYRAG | 3 cut(s) | 532, 1046, 1667 |
| SpeI | ACTAGT | 2 cut(s) | 1078, 3652 |
| SseBI | AGGCCT | 1 cut(s) | 3101 |
| SspDI | GGCGCC | 1 cut(s) | 741 |
| SspI | AATATT | 8 cut(s) | 180, 774, 796, 849, 2196, 2737, 2953, 3523 |
| SstI | GAGCTC | 2 cut(s) | 1272, 1474 |
| StuI | AGGCCT | 1 cut(s) | 3101 |
| StyD4I | CCNGG | 7 cut(s) | 305, 883, 1285, 1746, 1872, 3096, 3310 |
| StyI | CCWWGG | 3 cut(s) | 924, 1768, 2256 |
| TaaI | ACNGT | 4 cut(s) | 556, 1819, 1955, 2235 |
| TaiI | ACGT | 8 cut(s) | 242, 432, 570, 956, 1835, 1846, 2017, 3366 |
| TaqII | GACCGA | 1 cut(s) | 1858 |
| TatI | WGTACW | 8 cut(s) | 551, 1499, 1612, 2334, 2652, 3022, 3150, 3646 |
| TauI | GCSGC | 6 cut(s) | 3035, 3038, 3164, 3267, 3592, 3595 |
| TfiI | GAWTC | 8 cut(s) | 673, 827, 1465, 1674, 1923, 2092, 2143, 3225 |
| TscAI | CASTG | 5 cut(s) | 1822, 2319, 2333, 3235, 3515 |
| TseFI | GTSAC | 7 cut(s) | 293, 1041, 1379, 1492, 1833, 1844, 3257 |
| Tsp45I | GTSAC | 7 cut(s) | 293, 1041, 1379, 1492, 1833, 1844, 3257 |
| TspGWI | ACGGA | 4 cut(s) | 419, 783, 839, 3094 |
| TspRI | CASTG | 5 cut(s) | 1822, 2319, 2333, 3235, 3515 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3247 |
| VneI | GTGCAC | 2 cut(s) | 1332, 1820 |
| VpaK11BI | GGWCC | 7 cut(s) | 222, 321, 1710, 1870, 1914, 2069, 2424 |
| VspI | ATTAAT | 3 cut(s) | 2192, 3528, 3677 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3561 |
| XapI | RAATTY | 6 cut(s) | 133, 589, 2120, 2321, 2704, 3285 |
| XbaI | TCTAGA | 1 cut(s) | 1474 |
| XceI | RCATGY | 2 cut(s) | 1281, 1493 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1313 |
| XhoI | CTCGAG | 3 cut(s) | 532, 1046, 1667 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3354 |
| ZrmI | AGTACT | 4 cut(s) | 553, 1501, 1614, 3024 |
| Zsp2I | ATGCAT | 3 cut(s) | 1198, 1263, 2036 |