Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Reverse (-)

3026109 .. 3027114

Gene Structure 1006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATCAACAGCAGCAACAACAACAACAAGAATGATGATCATCATCATCAACATAATAATGATCCAATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCTCATTTCCCTCCTCTCTCTTCTTCCCTCACAACCACCACTCTTCTCTCCGGAGATCAAGAAGACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTACAAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGCCGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGAATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACGGCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTACTCAATAATAATACCGGATATACTCCTCCGCCGCCGCAAGATCAAGCTTCTCAGGCGGTGACGACGTCATGGGTTTCACCGCCACCACCGCCAAGTTTCGGCCGTGGGGGAAGAGGAGTAGGAGAATTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

224

Amino Acids

25.4

Weight (kDa)

6.16

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	134 - 175	1.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	136 - 178	5.4e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AatII	GACGTC	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	7 cut(s)	398, 569, 572, 575, 596, 620, 629
AclWI	GGATC	4 cut(s)	110, 380, 440, 526
AcoI	YGGCCR	2 cut(s)	129, 640
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	143, 299
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgsI	TTSAA	3 cut(s)	163, 486, 523
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	151, 500, 587
AluI	AGCT	3 cut(s)	151, 500, 587
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	4 cut(s)	110, 380, 440, 526
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	2 cut(s)	129, 640
ApeKI	GCWGC	2 cut(s)	66, 308
ApoI	RAATTY	1 cut(s)	438
AseI	ATTAAT	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	609, 610
AvaII	GGWCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	131
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	246, 255
BbvI	GCAGC	2 cut(s)	78, 320
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	5 cut(s)	345, 396, 495, 542, 627
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	3 cut(s)	266, 402, 673
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	5 cut(s)	67, 309, 399, 572, 575
BlsI	GCNGC	5 cut(s)	68, 310, 400, 573, 576
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	246, 255
BsaBI	GATNNNNATC	2 cut(s)	93, 96
BsaHI	GRCGYC	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	132, 643
BsaWI	WCCGGW	2 cut(s)	227, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	139
Bse8I	GATNNNNATC	2 cut(s)	93, 96
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	132, 643
BseJI	GATNNNNATC	2 cut(s)	93, 96
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	401, 605
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	3 cut(s)	180, 555, 669
BseX3I	CGGCCG	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	78, 320
BseYI	CCCAGC	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	643
BshFI	GGCC	2 cut(s)	131, 642
BsiEI	CGRYCG	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	228, 535, 555
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	131, 642
Bsp13I	TCCGGA	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	7 cut(s)	398, 569, 572, 575, 596, 620, 629
BspANI	GGCC	2 cut(s)	131, 642
BspCNI	CTCAG	2 cut(s)	400, 604
BspEI	TCCGGA	1 cut(s)	227
BspPI	GGATC	4 cut(s)	110, 380, 440, 526
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	132, 643
BssMI	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
BssNI	GRCGYC	1 cut(s)	605
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	5 cut(s)	35, 178, 202, 225, 646
BstACI	GRCGYC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	387, 591
BstDSI	CCRYGG	2 cut(s)	132, 643
BstKTI	GATC	8 cut(s)	94, 118, 235, 306, 375, 435, 534, 583
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	3 cut(s)	535, 593, 628
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	78, 320
BstV2I	GAAGAC	2 cut(s)	246, 255
BstX2I	RGATCY	2 cut(s)	372, 531
BstYI	RGATCY	2 cut(s)	372, 531
BstZI	CGGCCG	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	131, 642
BtgI	CCRYGG	2 cut(s)	132, 643
BtgZI	GCGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	142, 298
CviAII	CATG	3 cut(s)	133, 313, 609
CviJI	RGCY	9 cut(s)	131, 151, 311, 401, 482, 500, 538, 587, 642
CviKI_1	RGCY	9 cut(s)	131, 151, 311, 401, 482, 500, 538, 587, 642
CviQI	GTAC	2 cut(s)	142, 298
DdeI	CTNAG	2 cut(s)	387, 591
DpnI	GATC	8 cut(s)	93, 117, 234, 305, 374, 434, 533, 582
DpnII	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
EaeI	YGGCCR	2 cut(s)	129, 640
EagI	CGGCCG	1 cut(s)	640
Eam1104I	CTCTTC	5 cut(s)	35, 178, 202, 225, 646
EarI	CTCTTC	5 cut(s)	35, 178, 202, 225, 646
EciI	GGCGGA	1 cut(s)	558
EclXI	CGGCCG	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	136, 316, 612
FatI	CATG	3 cut(s)	132, 312, 608
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	67, 309, 399, 572, 575
Fsp4HI	GCNGC	5 cut(s)	67, 309, 399, 572, 575
FspBI	CTAG	3 cut(s)	266, 402, 673
GluI	GCNGC	5 cut(s)	67, 309, 399, 572, 575
GsaI	CCCAGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	131, 642
HapII	CCGG	3 cut(s)	228, 535, 555
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	136, 316, 612
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	2 cut(s)	420, 450
HpaII	CCGG	3 cut(s)	228, 535, 555
HphI	GGTGA	2 cut(s)	609, 610
Hpy166II	GTNNAC	2 cut(s)	144, 325
Hpy188I	TCNGA	4 cut(s)	379, 390, 437, 447
Hpy188III	TCNNGA	5 cut(s)	228, 236, 266, 346, 520
Hpy8I	GTNNAC	2 cut(s)	144, 325
Hpy99I	CGWCG	3 cut(s)	248, 383, 607
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	366, 605
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	535, 593, 628
HpyF3I	CTNAG	2 cut(s)	387, 591
HpySE526I	ACGT	2 cut(s)	366, 605
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	3 cut(s)	136, 316, 612
Kpn2I	TCCGGA	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	8 cut(s)	152, 241, 348, 444, 471, 548, 568, 578
Lsp1109I	GCAGC	2 cut(s)	78, 320
MaeI	CTAG	3 cut(s)	266, 402, 673
MaeII	ACGT	2 cut(s)	366, 605
MaeIII	GTNAC	2 cut(s)	362, 598
MalI	GATC	8 cut(s)	93, 117, 234, 305, 374, 434, 533, 582
MboI	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
MflI	RGATCY	2 cut(s)	372, 531
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	4 cut(s)	7, 37, 438, 665
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	3 cut(s)	111, 411, 470
Msp20I	TGGCCA	1 cut(s)	131
MspI	CCGG	3 cut(s)	228, 535, 555
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	535, 593, 628
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
NlaIII	CATG	3 cut(s)	136, 316, 612
NmuCI	GTSAC	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	604
PkrI	GCNGC	5 cut(s)	68, 310, 400, 573, 576
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	372, 531
PsyI	GACNNNGTC	1 cut(s)	604
RsaI	GTAC	2 cut(s)	143, 299
RsaNI	GTAC	2 cut(s)	142, 298
RseI	CAYNNNNRTG	3 cut(s)	111, 411, 470
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	5 cut(s)	67, 309, 399, 572, 575
Sau3AI	GATC	8 cut(s)	91, 115, 232, 303, 372, 432, 531, 580
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	7 cut(s)	153, 265, 369, 463, 502, 589, 608
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	3 cut(s)	111, 411, 470
Sse9I	AATT	4 cut(s)	7, 37, 438, 665
SsiI	CCGC	7 cut(s)	398, 569, 572, 575, 596, 620, 629
SspMI	CTAG	3 cut(s)	266, 402, 673
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	2 cut(s)	369, 608
TaqI	TCGA	2 cut(s)	330, 492
TasI	AATT	4 cut(s)	7, 37, 438, 665
TatI	WGTACW	2 cut(s)	141, 297
TauI	GCSGC	3 cut(s)	401, 574, 577
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	66, 308
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	17, 32, 299, 510
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	668
XapI	RAATTY	1 cut(s)	438
XbaI	TCTAGA	1 cut(s)	265
XspI	CTAG	3 cut(s)	266, 402, 673
ZraI	GACGTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.