Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Forward (+)

32853898 .. 32854746

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATCACACCAATTACTTAAACAATCAGCTGGGAAACAACCTCGTCTCTGCCGCTGGAGATCATCTCGACGATCATGTGGGAATGGAAGAACCCATCCAGCTCCACCACCATCATCATCACCAAATTTTGTACGATTCAGTTTGGCCGAACTTCCCTCTCCAACTACATCATCAAGTGCCATCGTCATCCAGTACTCACCTTCATTATGATCAATTTGGTCATCATGATCAACTAGTTCTACCTGGGAACTATAGTAGCTTTATGGATCAAGAAGATATTCAACATGAAGAGGAGCCGGAAGAGGAAGAGGAGCTGGGAGCTATGAAGGAAATGATGTACAAGATCGCCGCGATGCAACCAGTGGACATTGATCCTGCCACAATCCAAAAGCCGAAAAGGAGGAACGTCCGAATCAGTGACGACCCGCAGAGCGTGGCTGCGCGTCACCGGCGGGAGAGGATAAGCGAAAAGATCCGGATCCTGCAAAGACTTGTTCCCGGGGGAACGAAAATGGACACTGCTTCCATGTTAGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCCGCTTGCTACAACAATCGAGTCACCATCATCCTCACCAGCAATGCATGAATGTTAACGCTGGAATACTTGGTACACCCAGTGCAAGTACCGCTGCAGCCTTAGCTGGCGGTGGAGGGGCATTGGATTGGCTCCCACCGAATATTCCTGGTTCTGCCACCTCCTCTTCCACGGAAACTCCGACAACGAGACCAGCTCTTGGATTCAGAACCTTTGGAGGTAGCCGGGGAGATATTGCAGCTTTGAGCTTCAATCATGAGGTACTTAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

282

Amino Acids

31.5

Weight (kDa)

5.96

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	148 - 189	3.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	150 - 193	5.5e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	773
AccII	CGCG	2 cut(s)	353, 445
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	7 cut(s)	54, 351, 428, 454, 577, 666, 684
AclWI	GGATC	6 cut(s)	12, 276, 368, 469, 475, 488
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	6 cut(s)	134, 196, 341, 649, 664, 837
AfiI	CCNNNNNNNGG	1 cut(s)	773
AgsI	TTSAA	3 cut(s)	284, 565, 826
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	244, 721
AluBI	AGCT	9 cut(s)	31, 103, 261, 316, 323, 680, 770, 815, 822
AluI	AGCT	9 cut(s)	31, 103, 261, 316, 323, 680, 770, 815, 822
Alw26I	GTCTC	2 cut(s)	52, 757
AlwI	GGATC	6 cut(s)	12, 276, 368, 469, 475, 488
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	440, 668, 671, 812
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	2 cut(s)	279, 543
AspLEI	GCGC	1 cut(s)	445
AsuC2I	CCSGG	3 cut(s)	501, 502, 800
AsuHPI	GGTGA	5 cut(s)	113, 191, 440, 590, 602
AvaI	CYCGRG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	427, 655, 683, 824
BccI	CCATC	4 cut(s)	104, 120, 190, 609
BciT130I	CCWGG	2 cut(s)	246, 723
BclI	TGATCA	2 cut(s)	211, 229
BcnI	CCSGG	3 cut(s)	501, 502, 800
BcoDI	GTCTC	2 cut(s)	52, 757
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	253, 669
BisI	GCNGC	6 cut(s)	54, 351, 441, 669, 672, 813
BlsI	GCNGC	6 cut(s)	55, 352, 442, 670, 673, 814
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	5 cut(s)	246, 501, 502, 723, 800
BmeT110I	CYCGRG	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	297, 482, 707
BmrFI	CCNGG	5 cut(s)	246, 501, 502, 723, 800
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	648
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 754, 786
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	676
BpuMI	CCSGG	3 cut(s)	501, 502, 800
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	757
BsaJI	CCNNGG	5 cut(s)	245, 500, 501, 744, 799
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	3 cut(s)	192, 362, 654
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	246, 723
BseDI	CCNNGG	5 cut(s)	245, 500, 501, 744, 799
BseGI	GGATG	3 cut(s)	96, 188, 604
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMI	GCAATG	1 cut(s)	623
BseNI	ACTGG	3 cut(s)	192, 362, 654
BseRI	GAGGAG	3 cut(s)	308, 326, 727
BseXI	GCAGC	4 cut(s)	427, 655, 683, 824
BseYI	CCCAGC	2 cut(s)	31, 316
Bsh1236I	CGCG	2 cut(s)	353, 445
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	5 cut(s)	299, 451, 478, 501, 799
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	2 cut(s)	52, 757
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	757
BsoBI	CYCGRG	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	339
BspACI	CCGC	7 cut(s)	54, 351, 428, 454, 577, 666, 684
BspANI	GGCC	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	477
BspFNI	CGCG	2 cut(s)	353, 445
BspHI	TCATGA	2 cut(s)	226, 829
BspLI	GGNNCC	3 cut(s)	297, 482, 707
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	6 cut(s)	12, 276, 368, 469, 475, 488
BspTNI	GGTCTC	1 cut(s)	757
BsrDI	GCAATG	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	192, 362, 654
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	5 cut(s)	245, 500, 501, 744, 799
Bst2UI	CCWGG	2 cut(s)	246, 723
Bst6I	CTCTTC	5 cut(s)	285, 297, 303, 560, 745
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	581, 682
BstDEI	CTNAG	2 cut(s)	676, 839
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	3 cut(s)	96, 188, 604
BstFNI	CGCG	2 cut(s)	353, 445
BstHHI	GCGC	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	52, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	451, 665, 677
BstNI	CCWGG	2 cut(s)	246, 723
BstSCI	CCNGG	5 cut(s)	244, 499, 500, 721, 798
BstSFI	CTRYAG	2 cut(s)	253, 669
BstUI	CGCG	2 cut(s)	353, 445
BstV1I	GCAGC	4 cut(s)	427, 655, 683, 824
BstX2I	RGATCY	2 cut(s)	474, 480
BstYI	RGATCY	2 cut(s)	474, 480
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	96, 188, 604
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	369, 424, 519, 661
Cac8I	GCNNGC	2 cut(s)	581, 682
CciI	TCATGA	2 cut(s)	226, 829
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	450
Cfr9I	CCCGGG	1 cut(s)	500
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	6 cut(s)	133, 195, 340, 648, 663, 836
CviAII	CATG	6 cut(s)	77, 227, 287, 529, 622, 830
CviQI	GTAC	6 cut(s)	133, 195, 340, 648, 663, 836
DdeI	CTNAG	2 cut(s)	676, 839
DraIII	CACNNNGTG	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	5 cut(s)	285, 297, 303, 560, 745
EarI	CTCTTC	5 cut(s)	285, 297, 303, 560, 745
Eco31I	GGTCTC	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	244, 721
EcoT22I	ATGCAT	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	6 cut(s)	80, 230, 290, 532, 625, 833
FatI	CATG	6 cut(s)	76, 226, 286, 528, 621, 829
FauI	CCCGC	2 cut(s)	435, 447
FbaI	TGATCA	2 cut(s)	211, 229
Fnu4HI	GCNGC	6 cut(s)	54, 351, 441, 669, 672, 813
FokI	GGATG	3 cut(s)	83, 175, 591
Fsp4HI	GCNGC	6 cut(s)	54, 351, 441, 669, 672, 813
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	6 cut(s)	54, 351, 441, 669, 672, 813
GsaI	CCCAGC	2 cut(s)	35, 320
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	5 cut(s)	299, 451, 478, 501, 799
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	6 cut(s)	80, 230, 290, 532, 625, 833
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	137, 414, 595, 777
HpaI	GTTAAC	1 cut(s)	631
HpaII	CCGG	5 cut(s)	299, 451, 478, 501, 799
HphI	GGTGA	5 cut(s)	113, 191, 440, 590, 602
Hpy166II	GTNNAC	3 cut(s)	367, 631, 650
Hpy188I	TCNGA	3 cut(s)	413, 756, 782
Hpy188III	TCNNGA	6 cut(s)	68, 227, 272, 478, 562, 830
Hpy8I	GTNNAC	3 cut(s)	367, 631, 650
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	212, 322
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	6 cut(s)	358, 487, 621, 659, 671, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	451, 665, 677
HpyF3I	CTNAG	2 cut(s)	676, 839
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	80, 230, 290, 532, 625, 833
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	477
Ksp22I	TGATCA	2 cut(s)	211, 229
KspAI	GTTAAC	1 cut(s)	631
LmnI	GCTCC	5 cut(s)	108, 295, 313, 320, 711
Lsp1109I	GCAGC	4 cut(s)	427, 655, 683, 824
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	419, 446, 596
MboII	GAAGA	7 cut(s)	101, 287, 302, 314, 320, 577, 732
MflI	RGATCY	2 cut(s)	474, 480
MluCI	AATT	3 cut(s)	13, 126, 215
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	2 cut(s)	187, 779
Mph1103I	ATGCAT	1 cut(s)	623
MroI	TCCGGA	1 cut(s)	477
MroXI	GAANNNNTTC	2 cut(s)	279, 543
MseI	TTAA	3 cut(s)	20, 630, 847
MspA1I	CMGCKG	3 cut(s)	31, 56, 668
MspI	CCGG	5 cut(s)	299, 451, 478, 501, 799
MspR9I	CCNGG	5 cut(s)	246, 501, 502, 723, 800
MvaI	CCWGG	2 cut(s)	246, 723
MvnI	CGCG	2 cut(s)	353, 445
MwoI	GCNNNNNNNGC	3 cut(s)	451, 665, 677
NciI	CCSGG	3 cut(s)	501, 502, 800
NlaIII	CATG	6 cut(s)	80, 230, 290, 532, 625, 833
NlaIV	GGNNCC	3 cut(s)	297, 482, 707
NmuCI	GTSAC	3 cut(s)	419, 446, 596
NsiI	ATGCAT	1 cut(s)	623
PagI	TCATGA	2 cut(s)	226, 829
PcsI	WCGNNNNNNNCGW	1 cut(s)	752
PdmI	GAANNNNTTC	2 cut(s)	279, 543
PfeI	GAWTC	3 cut(s)	137, 414, 777
PflMI	CCANNNNNTGG	1 cut(s)	773
PkrI	GCNGC	6 cut(s)	55, 352, 442, 670, 673, 814
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	244, 721
PspFI	CCCAGC	2 cut(s)	31, 316
PspGI	CCWGG	2 cut(s)	244, 721
PspN4I	GGNNCC	3 cut(s)	297, 482, 707
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	474, 480
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	6 cut(s)	134, 196, 341, 649, 664, 837
RsaNI	GTAC	6 cut(s)	133, 195, 340, 648, 663, 836
SaqAI	TTAA	3 cut(s)	20, 630, 847
SatI	GCNGC	6 cut(s)	54, 351, 441, 669, 672, 813
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	5 cut(s)	246, 501, 502, 723, 800
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	2 cut(s)	253, 669
SgrAI	CRCCGGYG	1 cut(s)	450
SmaI	CCCGGG	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	3 cut(s)	13, 126, 215
SsiI	CCGC	7 cut(s)	54, 351, 428, 454, 577, 666, 684
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	5 cut(s)	244, 499, 500, 721, 798
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	69, 593
TasI	AATT	3 cut(s)	13, 126, 215
TatI	WGTACW	2 cut(s)	194, 339
TauI	GCSGC	2 cut(s)	56, 353
TfiI	GAWTC	3 cut(s)	137, 414, 777
Tru1I	TTAA	3 cut(s)	20, 630, 847
Tru9I	TTAA	3 cut(s)	20, 630, 847
TscAI	CASTG	4 cut(s)	369, 424, 526, 661
TseFI	GTSAC	3 cut(s)	419, 446, 596
TseI	GCWGC	4 cut(s)	440, 668, 671, 812
Tsp45I	GTSAC	3 cut(s)	419, 446, 596
TspDTI	ATGAA	4 cut(s)	194, 303, 341, 638
TspGWI	ACGGA	1 cut(s)	761
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	4 cut(s)	369, 424, 526, 661
Van91I	CCANNNNNTGG	1 cut(s)	773
XapI	RAATTY	1 cut(s)	126
XmaI	CCCGGG	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	279, 543
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.