Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368037.1

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 646

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368037.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggatcacaccaattacttaaacaatcagctgggaaacaacctcgtctctgccgctggagatcatctcgacgatcatgtgggaatggaagatcccatccagctccaccaccatcatcatcaccaaattttgtacgattcagtttggccgaacttccctctccaactacatcatcaagtgccatcgtcatccagtactcaccttcattatgatcaatttggtcatcatgatcaactagttctacctgggaactatagtagctttatggatcaagaagatattcaacatgaagaggagccggaagaggaagaggagctgggagctatgaaggaaatgatgtacaagatcgccgcgatgcaaccagtggacattgatcctgccacaatccaaaagccgaaaaggaggaacgtccgaatcagtgacgacccgcagagcgtggctgcgcgtcaccggcgggagaggataagcgaaaagatccggatcctgcaaagacttgttcccgggggaacgaaaatggacactgcttccatgttagacgaagccattcgctatgtcaagttcttgaagaggcaaatccgcttgctacaacaatcgagtcaccatcatcctcaccagcaatgcattaatgttaacgctggaatactt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

215

Amino Acids

24.94

Weight (kDa)

6.05

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	353, 445
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	5 cut(s)	54, 351, 428, 454, 577
AclWI	GGATC	7 cut(s)	12, 86, 276, 368, 469, 475, 488
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	3 cut(s)	134, 196, 341
AgsI	TTSAA	2 cut(s)	284, 565
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	5 cut(s)	31, 103, 261, 316, 323
AluI	AGCT	5 cut(s)	31, 103, 261, 316, 323
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	7 cut(s)	12, 86, 276, 368, 469, 475, 488
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	624
Asp700I	GAANNNNTTC	2 cut(s)	279, 543
AspLEI	GCGC	1 cut(s)	445
AsuC2I	CCSGG	2 cut(s)	501, 502
AsuHPI	GGTGA	5 cut(s)	113, 191, 440, 590, 602
AvaI	CYCGRG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	4 cut(s)	104, 120, 190, 609
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	2 cut(s)	211, 229
BcnI	CCSGG	2 cut(s)	501, 502
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	3 cut(s)	54, 351, 441
BlsI	GCNGC	3 cut(s)	55, 352, 442
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	246, 501, 502
BmeT110I	CYCGRG	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	297, 482
BmrFI	CCNGG	3 cut(s)	246, 501, 502
BmsI	GCATC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	501, 502
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	245, 500, 501
BsaWI	WCCGGW	1 cut(s)	477
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	192, 362
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	245, 500, 501
BseGI	GGATG	3 cut(s)	96, 188, 604
BseJI	GATNNNNATC	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	623
BseNI	ACTGG	2 cut(s)	192, 362
BseRI	GAGGAG	2 cut(s)	308, 326
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	2 cut(s)	31, 316
Bsh1236I	CGCG	2 cut(s)	353, 445
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	4 cut(s)	299, 451, 478, 501
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	339
BspACI	CCGC	5 cut(s)	54, 351, 428, 454, 577
BspANI	GGCC	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	477
BspFNI	CGCG	2 cut(s)	353, 445
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	297, 482
BspPI	GGATC	7 cut(s)	12, 86, 276, 368, 469, 475, 488
BsrDI	GCAATG	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	192, 362
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	245, 500, 501
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	4 cut(s)	285, 297, 303, 560
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	581
BstF5I	GGATG	3 cut(s)	96, 188, 604
BstFNI	CGCG	2 cut(s)	353, 445
BstHHI	GCGC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	3 cut(s)	244, 499, 500
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	2 cut(s)	353, 445
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	3 cut(s)	91, 474, 480
BstYI	RGATCY	3 cut(s)	91, 474, 480
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	96, 188, 604
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	369, 424, 519
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	450
Cfr9I	CCCGGG	1 cut(s)	500
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	133, 195, 340
CviAII	CATG	4 cut(s)	77, 227, 287, 529
CviQI	GTAC	3 cut(s)	133, 195, 340
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	4 cut(s)	285, 297, 303, 560
EarI	CTCTTC	4 cut(s)	285, 297, 303, 560
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	4 cut(s)	80, 230, 290, 532
FaiI	YATR	9 cut(s)	78, 210, 228, 255, 266, 288, 326, 530, 552
FatI	CATG	4 cut(s)	76, 226, 286, 528
FauI	CCCGC	2 cut(s)	435, 447
FbaI	TGATCA	2 cut(s)	211, 229
Fnu4HI	GCNGC	3 cut(s)	54, 351, 441
FokI	GGATG	3 cut(s)	83, 175, 591
Fsp4HI	GCNGC	3 cut(s)	54, 351, 441
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	3 cut(s)	54, 351, 441
GsaI	CCCAGC	2 cut(s)	35, 320
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	4 cut(s)	299, 451, 478, 501
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	80, 230, 290, 532
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	137, 414, 595
HpaI	GTTAAC	1 cut(s)	631
HpaII	CCGG	4 cut(s)	299, 451, 478, 501
HphI	GGTGA	5 cut(s)	113, 191, 440, 590, 602
Hpy166II	GTNNAC	2 cut(s)	367, 631
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	5 cut(s)	68, 227, 272, 478, 562
Hpy8I	GTNNAC	2 cut(s)	367, 631
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	212, 322
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	358, 487, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	80, 230, 290, 532
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	477
Ksp22I	TGATCA	2 cut(s)	211, 229
KspAI	GTTAAC	1 cut(s)	631
LmnI	GCTCC	4 cut(s)	108, 295, 313, 320
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	419, 446, 596
MboII	GAAGA	6 cut(s)	101, 287, 302, 314, 320, 577
MflI	RGATCY	3 cut(s)	91, 474, 480
MluCI	AATT	3 cut(s)	13, 126, 215
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	53, 168, 286, 298, 304, 396, 453, 561, 618
Mph1103I	ATGCAT	1 cut(s)	623
MroI	TCCGGA	1 cut(s)	477
MroXI	GAANNNNTTC	2 cut(s)	279, 543
MseI	TTAA	3 cut(s)	20, 624, 630
MspA1I	CMGCKG	2 cut(s)	31, 56
MspI	CCGG	4 cut(s)	299, 451, 478, 501
MspR9I	CCNGG	3 cut(s)	246, 501, 502
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	353, 445
MwoI	GCNNNNNNNGC	1 cut(s)	451
NciI	CCSGG	2 cut(s)	501, 502
NlaIII	CATG	4 cut(s)	80, 230, 290, 532
NlaIV	GGNNCC	2 cut(s)	297, 482
NmuCI	GTSAC	3 cut(s)	419, 446, 596
NsiI	ATGCAT	1 cut(s)	623
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	279, 543
PfeI	GAWTC	2 cut(s)	137, 414
PkrI	GCNGC	3 cut(s)	55, 352, 442
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	31, 316
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	297, 482
PsuI	RGATCY	3 cut(s)	91, 474, 480
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	134, 196, 341
RsaNI	GTAC	3 cut(s)	133, 195, 340
SaqAI	TTAA	3 cut(s)	20, 624, 630
SatI	GCNGC	3 cut(s)	54, 351, 441
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	3 cut(s)	246, 501, 502
SetI	ASST	9 cut(s)	33, 45, 105, 204, 247, 263, 318, 325, 411
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	253
SgrAI	CRCCGGYG	1 cut(s)	450
SmaI	CCCGGG	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	3 cut(s)	13, 126, 215
SsiI	CCGC	5 cut(s)	54, 351, 428, 454, 577
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	244, 499, 500
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	69, 593
TasI	AATT	3 cut(s)	13, 126, 215
TatI	WGTACW	2 cut(s)	194, 339
TauI	GCSGC	2 cut(s)	56, 353
TfiI	GAWTC	2 cut(s)	137, 414
Tru1I	TTAA	3 cut(s)	20, 624, 630
Tru9I	TTAA	3 cut(s)	20, 624, 630
TscAI	CASTG	3 cut(s)	369, 424, 526
TseFI	GTSAC	3 cut(s)	419, 446, 596
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	3 cut(s)	419, 446, 596
TspDTI	ATGAA	3 cut(s)	194, 303, 341
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	3 cut(s)	369, 424, 526
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	1 cut(s)	126
XmaI	CCCGGG	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	279, 543
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.