Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Reverse (-)

57387575 .. 57388891

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATCACACCAATTACTTAAACAATCAGCTGGGAAACAACCTCGTCTCTGCCGCTGGAGATCATCACGACGATCATGTGGGAATGGAAGATCCCATCCAGCTCCACCACCATCATCATCACCAAATTTCGTACGATTCAGTTTGGCCGAACTTCCCTCTCCAACTACATCATCAAGTGCCATCGTCATCCAGTACTCACCTTCATTATGATCAATTTGGTCATCATGATCAACTAGTTCTACCTGGGAACTATAGTAACTTTATGGATCAAGAAGATATTCAACATGAAGAGGAGCCGGAAGAGGAAGAGGAAGAGGAGCTGGGAGCTATGAAGGAAATGATGTACAAGATCGCCGCGATGCAACCAGTGGACATTGATCCTGCCACAATCCAAAAGCCAAAAAGGAGGAACGTCCGAATCAGTGACGACCCGCAGAGCGTGGCTGCGCGTCACCGGCGGGAGAGGATAAGCGAGAAGATCCGGATCCTGCAAAGACTTGTTCCCGGGGAACGAAAATGGACACTGCTTCCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

179

Amino Acids

20.94

Weight (kDa)

5.61

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	359, 451
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	4 cut(s)	54, 357, 434, 460
AclWI	GGATC	7 cut(s)	12, 86, 276, 374, 475, 481, 494
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	3 cut(s)	134, 196, 347
AgsI	TTSAA	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	4 cut(s)	31, 103, 322, 329
AluI	AGCT	4 cut(s)	31, 103, 322, 329
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	7 cut(s)	12, 86, 276, 374, 475, 481, 494
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	2 cut(s)	507, 508
AsuHPI	GGTGA	3 cut(s)	113, 191, 446
AvaI	CYCGRG	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	104, 120, 190
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	2 cut(s)	211, 229
BcnI	CCSGG	2 cut(s)	507, 508
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	3 cut(s)	54, 357, 447
BlsI	GCNGC	3 cut(s)	55, 358, 448
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	246, 507, 508
BmeT110I	CYCGRG	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	297, 488
BmrFI	CCNGG	3 cut(s)	246, 507, 508
BmsI	GCATC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	507, 508
BsaBI	GATNNNNATC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	245, 506, 507
BsaWI	WCCGGW	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	192, 368
Bse8I	GATNNNNATC	1 cut(s)	485
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	245, 506, 507
BseGI	GGATG	2 cut(s)	96, 188
BseJI	GATNNNNATC	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	192, 368
BseRI	GAGGAG	2 cut(s)	308, 332
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	2 cut(s)	31, 322
Bsh1236I	CGCG	2 cut(s)	359, 451
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	4 cut(s)	299, 457, 484, 507
BsiWI	CGTACG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	345
BspACI	CCGC	4 cut(s)	54, 357, 434, 460
BspANI	GGCC	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	2 cut(s)	359, 451
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	297, 488
BspPI	GGATC	7 cut(s)	12, 86, 276, 374, 475, 481, 494
BsrFI	RCCGGY	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	192, 368
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	3 cut(s)	245, 506, 507
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	4 cut(s)	285, 297, 303, 309
BstAUI	TGTACA	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	96, 188
BstFNI	CGCG	2 cut(s)	359, 451
BstHHI	GCGC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	3 cut(s)	244, 505, 506
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	2 cut(s)	359, 451
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	3 cut(s)	91, 480, 486
BstYI	RGATCY	3 cut(s)	91, 480, 486
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	96, 188
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	3 cut(s)	375, 430, 524
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	456
Cfr9I	CCCGGG	1 cut(s)	506
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	133, 195, 346
CviAII	CATG	4 cut(s)	77, 227, 287, 534
CviJI	RGCY	8 cut(s)	31, 103, 148, 298, 322, 329, 400, 446
CviKI_1	RGCY	8 cut(s)	31, 103, 148, 298, 322, 329, 400, 446
CviQI	GTAC	3 cut(s)	133, 195, 346
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	4 cut(s)	285, 297, 303, 309
EarI	CTCTTC	4 cut(s)	285, 297, 303, 309
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	4 cut(s)	80, 230, 290, 537
FaiI	YATR	8 cut(s)	78, 210, 228, 255, 266, 288, 332, 535
FatI	CATG	4 cut(s)	76, 226, 286, 533
FauI	CCCGC	2 cut(s)	441, 453
FbaI	TGATCA	2 cut(s)	211, 229
Fnu4HI	GCNGC	3 cut(s)	54, 357, 447
FokI	GGATG	2 cut(s)	83, 175
Fsp4HI	GCNGC	3 cut(s)	54, 357, 447
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	3 cut(s)	54, 357, 447
GsaI	CCCAGC	2 cut(s)	35, 326
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	4 cut(s)	299, 457, 484, 507
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	80, 230, 290, 537
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	2 cut(s)	137, 420
HpaII	CCGG	4 cut(s)	299, 457, 484, 507
HphI	GGTGA	3 cut(s)	113, 191, 446
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	4 cut(s)	68, 227, 272, 484
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	212, 328
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	364, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	80, 230, 290, 537
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	483
Ksp22I	TGATCA	2 cut(s)	211, 229
LmnI	GCTCC	4 cut(s)	108, 295, 319, 326
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	257, 425, 452
MboII	GAAGA	7 cut(s)	101, 287, 302, 314, 320, 326, 490
MflI	RGATCY	3 cut(s)	91, 480, 486
MluCI	AATT	3 cut(s)	13, 126, 215
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	8 cut(s)	53, 168, 286, 298, 304, 310, 402, 459
MroI	TCCGGA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	31, 56
MspI	CCGG	4 cut(s)	299, 457, 484, 507
MspR9I	CCNGG	3 cut(s)	246, 507, 508
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	359, 451
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	2 cut(s)	507, 508
NlaIII	CATG	4 cut(s)	80, 230, 290, 537
NlaIV	GGNNCC	2 cut(s)	297, 488
NmuCI	GTSAC	2 cut(s)	425, 452
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	137, 420
Pfl23II	CGTACG	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	55, 358, 448
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	31, 322
PspGI	CCWGG	1 cut(s)	244
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	297, 488
PsuI	RGATCY	3 cut(s)	91, 480, 486
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	134, 196, 347
RsaNI	GTAC	3 cut(s)	133, 195, 346
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	3 cut(s)	54, 357, 447
ScaI	AGTACT	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	246, 507, 508
SetI	ASST	8 cut(s)	33, 45, 105, 204, 247, 324, 331, 417
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	253
SgrAI	CRCCGGYG	1 cut(s)	456
SmaI	CCCGGG	1 cut(s)	508
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	3 cut(s)	13, 126, 215
SsiI	CCGC	4 cut(s)	54, 357, 434, 460
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	244, 505, 506
TaiI	ACGT	1 cut(s)	417
TasI	AATT	3 cut(s)	13, 126, 215
TatI	WGTACW	2 cut(s)	194, 345
TauI	GCSGC	2 cut(s)	56, 359
TfiI	GAWTC	2 cut(s)	137, 420
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	3 cut(s)	375, 430, 531
TseFI	GTSAC	2 cut(s)	425, 452
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	425, 452
TspDTI	ATGAA	3 cut(s)	194, 303, 347
TspMI	CCCGGG	1 cut(s)	506
TspRI	CASTG	3 cut(s)	375, 430, 531
XapI	RAATTY	1 cut(s)	126
XmaI	CCCGGG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.