Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014344

Physical Location & Seq

Genomic Coordinates Forward (+)

14569375 .. 14570980

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGATCAATATTGATTACACAAGTAAGCTGGCAATGAACTCCTCTGGAGTGGATCTGGATGATGATCATGCTAGCATGGAAGACCCCATCCTCCATCAGATTTCCTCCTACGAATATTCTTCTCTTTGGCCAAACTTGCCTCTCCCTCATCATCCACTACATCAAATACCATCTTCATCCACTGCTCCTCCTCCTCCTCCTCATCATCATCAATCAATCGCTGATCATCAAATGCTACTACTAGCTGGCGGGAATAATAACAACATTTTTGTGGAATTAAATGAGCATGAAGATGATGAAGAGGCAGGTGATGGTGGTGGTGGTGAGGAGGAGCTTGGAGCTATGAAGGAAATGATGTACAAGATCGCAGCTATGCAACCGGTGGACATCGATCCGGCCACAATCCGGAGGCCCAAACGGAGAAACGTGCGAATCAGTGACGACCCGCAAAGCGTGGCTGCCCGTCACCGGCGGGAGAGGATAAGCGAGAAAATCCGCATCCTCCAAAGACTTGTTCCGGGGGGAACTAAAATGGACACAGCTTCCATGTTGGACGAAGCCATTCGCTACGTCAAGTTCTTGAAGAGGCAAATCCGGCTACTTCAATCATCTTCATCCTCATCAGCGTTGTCAAATAATAATCATCAGCTTCATGATCATGATCCTCAATCAGCAGCAGCTCATGATGATCATGATCATGGTCAATGCAATATTAATATTATTAATAATATTAATGGATCATCATCAGTTGGTGCCAGAGGCGCAAGGTTGCCTTTGGATTGGCCGCGGCATAATATTAATGTGAATCATATTAACACAGCACAAAAACCCAACAATCATCATGCCGCAGCAGCCGCCGCCGCCACCACCACCACCTCCTCCGCTAGAAACCCTCGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

302

Amino Acids

33.29

Weight (kDa)

6.17

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00120 AT5G09750
fragaria_vesca	FvH4_1g24110
malus_domestica	MD01G1002500.v1.1
prunus_persica	Prupe.6G159200_v2.0.a1
pyrus_communis	pycom01g02490
rosa_chinensis	RchiOBHm_Chr2g0120331
rosa_laevigata	RLG00000018548
rosa_multiflora	Rmu_co8368037.1_g000001 Rmu_sc0004523.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123560
rosa_rugosa	Rorug02G0228500
rosa_samantha	Rh2AG284800 Rh2BG295800 Rh2CG273400 Rh2DG309800
rosa_wichuraiana	Rw2G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	755
AccII	CGCG	1 cut(s)	790
AccIII	TCCGGA	1 cut(s)	408
AclWI	GGATC	4 cut(s)	63, 389, 659, 748
AcoI	YGGCCR	3 cut(s)	131, 399, 785
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	408, 471
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	586, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	8 cut(s)	31, 248, 337, 344, 374, 545, 652, 683
AluI	AGCT	8 cut(s)	31, 248, 337, 344, 374, 545, 652, 683
AlwI	GGATC	4 cut(s)	63, 389, 659, 748
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	4 cut(s)	131, 399, 413, 785
ApeKI	GCWGC	6 cut(s)	371, 461, 677, 680, 851, 854
AseI	ATTAAT	4 cut(s)	717, 726, 735, 801
AsiGI	ACCGGT	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	767
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	323, 338, 461
AsuNHI	GCTAGC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	6 cut(s)	383, 448, 689, 692, 863, 866
BccI	CCATC	4 cut(s)	98, 105, 181, 308
BclI	TGATCA	5 cut(s)	67, 226, 658, 691, 697
BcnI	CCSGG	1 cut(s)	522
BfaI	CTAG	4 cut(s)	75, 245, 888, 904
BfuAI	ACCTGC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	510
BmtI	GCTAGC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	4 cut(s)	66, 663, 696, 745
BsaJI	CCNNGG	2 cut(s)	521, 788
BsaWI	WCCGGW	2 cut(s)	382, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 471
Bse118I	RCCGGY	2 cut(s)	382, 471
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	4 cut(s)	66, 663, 696, 745
BseAI	TCCGGA	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	521, 788
BseGI	GGATG	6 cut(s)	67, 90, 154, 179, 501, 617
BseJI	GATNNNNATC	4 cut(s)	66, 663, 696, 745
BseLI	CCNNNNNNNGG	2 cut(s)	408, 471
BseMI	GCAATG	1 cut(s)	42
BseRI	GAGGAG	9 cut(s)	34, 180, 183, 186, 189, 192, 344, 347, 871
BseXI	GCAGC	6 cut(s)	383, 448, 689, 692, 863, 866
Bsh1236I	CGCG	1 cut(s)	790
BshFI	GGCC	4 cut(s)	133, 401, 415, 787
BshNI	GGYRCC	1 cut(s)	755
BshTI	ACCGGT	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	6 cut(s)	383, 398, 409, 472, 521, 598
BslI	CCNNNNNNNGG	2 cut(s)	408, 471
BsnI	GGCC	4 cut(s)	133, 401, 415, 787
Bsp13I	TCCGGA	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	360
BspANI	GGCC	4 cut(s)	133, 401, 415, 787
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	790
BspHI	TCATGA	4 cut(s)	655, 661, 685, 694
BspLI	GGNNCC	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	299
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	4 cut(s)	63, 389, 659, 748
BspT107I	GGYRCC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	2 cut(s)	382, 471
BsrGI	TGTACA	1 cut(s)	360
BssAI	RCCGGY	2 cut(s)	382, 471
BssECI	CCNNGG	2 cut(s)	521, 788
Bst6I	CTCTTC	2 cut(s)	297, 581
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	33, 76, 250
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	6 cut(s)	67, 90, 154, 179, 501, 617
BstFNI	CGCG	1 cut(s)	790
BstHHI	GCGC	1 cut(s)	767
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 598, 764, 854, 857, 860, 863
BstSCI	CCNGG	1 cut(s)	520
BstUI	CGCG	1 cut(s)	790
BstV1I	GCAGC	6 cut(s)	383, 448, 689, 692, 863, 866
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	133, 401, 415, 787
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	788
BtsCI	GGATG	6 cut(s)	67, 90, 154, 179, 501, 617
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 445
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	3 cut(s)	33, 76, 250
CciI	TCATGA	4 cut(s)	655, 661, 685, 694
CfoI	GCGC	1 cut(s)	767
Cfr10I	RCCGGY	2 cut(s)	382, 471
Cfr13I	GGNCC	1 cut(s)	414
Cfr42I	CCGCGG	1 cut(s)	791
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	382
CviQI	GTAC	1 cut(s)	361
EaeI	YGGCCR	3 cut(s)	131, 399, 785
Eam1104I	CTCTTC	2 cut(s)	297, 581
EarI	CTCTTC	2 cut(s)	297, 581
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FauI	CCCGC	3 cut(s)	245, 456, 468
FbaI	TGATCA	5 cut(s)	67, 226, 658, 691, 697
FokI	GGATG	6 cut(s)	74, 77, 141, 166, 488, 604
FspBI	CTAG	4 cut(s)	75, 245, 888, 904
GlaI	GCGC	1 cut(s)	766
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	4 cut(s)	133, 401, 415, 787
HapII	CCGG	6 cut(s)	383, 398, 409, 472, 521, 598
HhaI	GCGC	1 cut(s)	767
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HinfI	GANTC	2 cut(s)	435, 808
HpaII	CCGG	6 cut(s)	383, 398, 409, 472, 521, 598
HphI	GGTGA	3 cut(s)	323, 338, 461
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	8 cut(s)	48, 59, 409, 583, 656, 662, 686, 695
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	429, 573
HpyCH4V	TGCA	2 cut(s)	379, 711
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 598, 764, 854, 857, 860, 863
HpySE526I	ACGT	2 cut(s)	429, 573
HspAI	GCGC	1 cut(s)	765
Kpn2I	TCCGGA	1 cut(s)	408
Ksp22I	TGATCA	5 cut(s)	67, 226, 658, 691, 697
KspI	CCGCGG	1 cut(s)	791
LmnI	GCTCC	3 cut(s)	193, 334, 341
Lsp1109I	GCAGC	6 cut(s)	383, 448, 689, 692, 863, 866
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	4 cut(s)	75, 245, 888, 904
MaeII	ACGT	2 cut(s)	429, 573
MaeIII	GTNAC	3 cut(s)	440, 467, 899
MboII	GAAGA	7 cut(s)	95, 114, 168, 305, 314, 598, 606
MflI	RGATCY	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	534
Mox20I	TGGCCA	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	6 cut(s)	281, 717, 726, 735, 801, 816
MslI	CAYNNNNRTG	4 cut(s)	272, 294, 660, 699
Msp20I	TGGCCA	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	6 cut(s)	383, 398, 409, 472, 521, 598
MspR9I	CCNGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	790
MwoI	GCNNNNNNNGC	7 cut(s)	139, 598, 764, 854, 857, 860, 863
NciI	CCSGG	1 cut(s)	522
NheI	GCTAGC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	3 cut(s)	440, 467, 899
PagI	TCATGA	4 cut(s)	655, 661, 685, 694
PaqCI	CACCTGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	435, 808
PinAI	ACCGGT	1 cut(s)	382
PshBI	ATTAAT	4 cut(s)	717, 726, 735, 801
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	4 cut(s)	272, 294, 660, 699
SacII	CCGCGG	1 cut(s)	791
SaqAI	TTAA	6 cut(s)	281, 717, 726, 735, 801, 816
Sau96I	GGNCC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	510
Sfr303I	CCGCGG	1 cut(s)	791
SgrAI	CRCCGGYG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	791
SmiMI	CAYNNNNRTG	4 cut(s)	272, 294, 660, 699
Sse9I	AATT	1 cut(s)	278
SspI	AATATT	6 cut(s)	13, 119, 715, 721, 733, 799
SspMI	CTAG	4 cut(s)	75, 245, 888, 904
StyD4I	CCNGG	1 cut(s)	520
TaiI	ACGT	2 cut(s)	432, 576
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	6 cut(s)	790, 793, 851, 860, 863, 866
TfiI	GAWTC	2 cut(s)	435, 808
Tru1I	TTAA	6 cut(s)	281, 717, 726, 735, 801, 816
Tru9I	TTAA	6 cut(s)	281, 717, 726, 735, 801, 816
TscAI	CASTG	2 cut(s)	190, 445
TseFI	GTSAC	3 cut(s)	440, 467, 899
TseI	GCWGC	6 cut(s)	371, 461, 677, 680, 851, 854
Tsp45I	GTSAC	3 cut(s)	440, 467, 899
TspDTI	ATGAA	7 cut(s)	53, 168, 306, 315, 362, 606, 644
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	190, 445
VspI	ATTAAT	4 cut(s)	717, 726, 735, 801
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	4 cut(s)	75, 245, 888, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.