AT4G01140

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015878
Physical Location & Seq
Reverse (-)
490749 .. 492418
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01140.1

Sequence Viewer

Length: 921 bp
ATGGGATCTACAAAGCTTGGTCTCATCATCATCGTCTTCGTCTTCTGCATCATCTCTAATCTACAAACGATGGTTCATTGCATCAACAACATTTCAGATTTGGACGATCTGATCCGTTCATACGCGGCTCGTGCGACTACAAGAAGACACACAGGCTCGTTGTACGATGTTTCACTTCCGTCAAATCTTTCCGACATCAAAGCATCGGTTGTTACGGTCCGTAACAGTATATTCTGGAGAAAAGGAACAAACTTTAGTGGTGTTTTGATTCCTCCGATGGTTAAAACGTCGCCGTACGCTAAAAGAATAGCTTTTGTCTTTGAGAGTTTCGGTGATAACTCTTCATCGGTTTACTTCCGGTTAGCTGATAATTACTCATTTGTTTCTCCGGTTATTGGATTCACCGGTTATGACGCGACCAACACGAATGATCTCAAAAAATTGAACCTTTCGATCAAGAGAGACAAGCCAATCTTGATCAAATTCGATCCTCACGCTTCTCGTGATCGCTCAAAAGTCAAATGCATCGTCTTTGGAGATAATGGTTTGTTGTTGAACATCAGCAATACGATACGGAATTACGAGTGTGCCACTACGAATTCTCATGGGCATTACGCACTTGTTGTCCTAAACCAGGAGAAAGTCAAACCGAAACACGAACCGGTGTTGGTTCGGAGGAATTGGTGGTGGATTGTTTTAACCGGGATTGGAGTTTCGGTTATTGTAGTTGTGGTGATCATTGTTTCGGTGAAGTTAGTGAGGAAAAAGAGGTTAAGAGATATGGAAAGAGAGTCGGAGAAGAGTGAAACGATCGGAAATGTTTGGATTGGTCGGAGTAGAATGCCGGCGGCGACGATGGTTAGAACTCAGCCATGTTTGGAATATCATGAAGATCTTCCTTCATCTTCGAATATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

9.72

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 29 - 209 2.5e-56 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01140
fragaria_vesca FvH4_7g15770
malus_domestica MD01G1074500.v1.1 MD07G1143400.v1.1
prunus_persica Prupe.2G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358561
rosa_laevigata RLG00000027946
rosa_multiflora Rmu_sc0001609.1_g000011
rosa_roxburghii Rroxscaffold_4G00297810
rosa_rugosa Rorug01G0262600
rosa_samantha Rh1AG277400 Rh1BG243700 Rh1CG260800 Rh1DG272000
rosa_wichuraiana Rw1G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 416
AciI CCGC 2 cut(s) 125, 848
AclWI GGATC 3 cut(s) 13, 106, 482
AcsI RAATTY 2 cut(s) 482, 598
AfaI GTAC 2 cut(s) 164, 296
AfiI CCNNNNNNNGG 2 cut(s) 395, 634
AgeI ACCGGT 2 cut(s) 404, 661
AgsI TTSAA 2 cut(s) 445, 556
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 3 cut(s) 16, 311, 365
AluI AGCT 3 cut(s) 16, 311, 365
Alw26I GTCTC 2 cut(s) 26, 456
AlwI GGATC 3 cut(s) 13, 106, 482
ApoI RAATTY 2 cut(s) 482, 598
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AsiGI ACCGGT 2 cut(s) 404, 661
Asp700I GAANNNNTTC 1 cut(s) 894
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 4 cut(s) 344, 394, 745, 760
AsuII TTCGAA 1 cut(s) 908
AvaII GGWCC 1 cut(s) 217
BauI CACGAG 2 cut(s) 129, 501
BbsI GAAGAC 3 cut(s) 28, 34, 151
BccI CCATC 3 cut(s) 64, 271, 850
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 635
BclI TGATCA 2 cut(s) 477, 735
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 26, 456
BglII AGATCT 1 cut(s) 892
BisI GCNGC 2 cut(s) 126, 849
BlsI GCNGC 2 cut(s) 127, 850
Bme1390I CCNGG 2 cut(s) 635, 703
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 635, 703
BmsI GCATC 4 cut(s) 57, 90, 212, 534
BpiI GAAGAC 3 cut(s) 28, 34, 151
BpmI CTGGAG 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 703
BsaI GGTCTC 1 cut(s) 26
BsaWI WCCGGW 4 cut(s) 357, 388, 404, 661
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 634
Bse118I RCCGGY 3 cut(s) 404, 661, 844
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 395, 634
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 881
Bsh1236I CGCG 2 cut(s) 125, 416
Bsh1285I CGRYCG 1 cut(s) 813
BshTI ACCGGT 2 cut(s) 404, 661
BsiEI CGRYCG 1 cut(s) 813
BsiSI CCGG 6 cut(s) 358, 389, 405, 662, 702, 845
BsiWI CGTACG 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 395, 634
BsmAI GTCTC 2 cut(s) 26, 456
BsmI GAATGC 1 cut(s) 846
Bso31I GGTCTC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 908
BspACI CCGC 2 cut(s) 125, 848
BspCNI CTCAG 1 cut(s) 880
BspFNI CGCG 2 cut(s) 125, 416
BspHI TCATGA 1 cut(s) 886
BspPI GGATC 3 cut(s) 13, 106, 482
BspT104I TTCGAA 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 3 cut(s) 404, 661, 844
BssAI RCCGGY 3 cut(s) 404, 661, 844
BssSI CACGAG 2 cut(s) 129, 501
Bst2BI CACGAG 2 cut(s) 129, 501
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 217, 227
Bst6I CTCTTC 2 cut(s) 346, 794
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 1 cut(s) 867
BstENI CCTNNNNNAGG 1 cut(s) 632
BstFNI CGCG 2 cut(s) 125, 416
BstMAI GTCTC 2 cut(s) 26, 456
BstMCI CGRYCG 1 cut(s) 813
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 633, 701
BstUI CGCG 2 cut(s) 125, 416
BstV2I GAAGAC 3 cut(s) 28, 34, 151
BstX2I RGATCY 2 cut(s) 5, 892
BstYI RGATCY 2 cut(s) 5, 892
Cac8I GCNNGC 1 cut(s) 846
CciI TCATGA 1 cut(s) 886
Cfr10I RCCGGY 3 cut(s) 404, 661, 844
Cfr13I GGNCC 1 cut(s) 217
CpoI CGGWCCG 1 cut(s) 217
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 163, 295
CspAI ACCGGT 2 cut(s) 404, 661
CspI CGGWCCG 1 cut(s) 217
CviAII CATG 4 cut(s) 605, 873, 887, 918
CviJI RGCY 7 cut(s) 16, 128, 156, 311, 365, 469, 871
CviKI_1 RGCY 7 cut(s) 16, 128, 156, 311, 365, 469, 871
CviQI GTAC 2 cut(s) 163, 295
DdeI CTNAG 1 cut(s) 867
Eam1104I CTCTTC 2 cut(s) 346, 794
EarI CTCTTC 2 cut(s) 346, 794
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 633
EcoT22I ATGCAT 1 cut(s) 527
FaeI CATG 4 cut(s) 608, 876, 890, 921
FaiI YATR 9 cut(s) 121, 230, 411, 606, 782, 874, 888, 914, 919
FalI AAGNNNNNCTT 4 cut(s) 295, 327, 458, 490
FatI CATG 4 cut(s) 604, 872, 886, 917
FbaI TGATCA 2 cut(s) 477, 735
Fnu4HI GCNGC 2 cut(s) 126, 849
Fsp4HI GCNGC 2 cut(s) 126, 849
GluI GCNGC 2 cut(s) 126, 849
GsuI CTGGAG 1 cut(s) 256
HapII CCGG 6 cut(s) 358, 389, 405, 662, 702, 845
HgaI GACGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 608, 876, 890, 921
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 268, 399, 791
HpaII CCGG 6 cut(s) 358, 389, 405, 662, 702, 845
HphI GGTGA 4 cut(s) 344, 394, 745, 760
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 8 cut(s) 97, 111, 193, 276, 675, 796, 815, 834
Hpy188III TCNNGA 5 cut(s) 235, 457, 475, 503, 887
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 2 cut(s) 292, 856
HpyAV CCTTC 1 cut(s) 909
HpyCH4III ACNGT 2 cut(s) 217, 227
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 48, 81, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 867
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 4 cut(s) 608, 876, 890, 921
KroI GCCGGC 1 cut(s) 844
KroNI GCCGGC 1 cut(s) 846
Ksp22I TGATCA 2 cut(s) 477, 735
LweI GCATC 4 cut(s) 57, 90, 212, 534
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 211, 221
MboII GAAGA 8 cut(s) 28, 34, 156, 333, 811, 887, 897, 902
MflI RGATCY 2 cut(s) 5, 892
MluCI AATT 6 cut(s) 370, 440, 482, 577, 598, 679
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 3 cut(s) 216, 774, 812
MnlI CCTC 5 cut(s) 282, 501, 669, 753, 762
Mph1103I ATGCAT 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 3 cut(s) 282, 698, 773
MspI CCGG 6 cut(s) 358, 389, 405, 662, 702, 845
MspR9I CCNGG 2 cut(s) 635, 703
Mva1269I GAATGC 1 cut(s) 846
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 2 cut(s) 125, 416
MwoI GCNNNNNNNGC 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 846
NciI CCSGG 1 cut(s) 703
NgoMIV GCCGGC 1 cut(s) 844
NlaIII CATG 4 cut(s) 608, 876, 890, 921
NsiI ATGCAT 1 cut(s) 527
NspV TTCGAA 1 cut(s) 908
PagI TCATGA 1 cut(s) 886
PctI GAATGC 1 cut(s) 846
PdiI GCCGGC 1 cut(s) 846
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 2 cut(s) 268, 399
Pfl23II CGTACG 1 cut(s) 294
PinAI ACCGGT 2 cut(s) 404, 661
PkrI GCNGC 2 cut(s) 127, 850
Ple19I CGATCG 1 cut(s) 813
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspLI CGTACG 1 cut(s) 294
PspPI GGNCC 1 cut(s) 217
PsuI RGATCY 2 cut(s) 5, 892
PvuI CGATCG 1 cut(s) 813
RsaI GTAC 2 cut(s) 164, 296
RsaNI GTAC 2 cut(s) 163, 295
Rsr2I CGGWCCG 1 cut(s) 217
RsrII CGGWCCG 1 cut(s) 217
SaqAI TTAA 3 cut(s) 282, 698, 773
SatI GCNGC 2 cut(s) 126, 849
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 2 cut(s) 635, 703
SetI ASST 6 cut(s) 18, 290, 313, 367, 450, 773
SfaNI GCATC 4 cut(s) 57, 90, 212, 534
SfuI TTCGAA 1 cut(s) 908
SinI GGWCC 1 cut(s) 217
Sse9I AATT 6 cut(s) 370, 440, 482, 577, 598, 679
SsiI CCGC 2 cut(s) 125, 848
StyD4I CCNGG 2 cut(s) 633, 701
TaaI ACNGT 2 cut(s) 217, 227
TaiI ACGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 452, 486, 908
TasI AATT 6 cut(s) 370, 440, 482, 577, 598, 679
TauI GCSGC 2 cut(s) 128, 851
TfiI GAWTC 2 cut(s) 268, 399
Tru1I TTAA 3 cut(s) 282, 698, 773
Tru9I TTAA 3 cut(s) 282, 698, 773
TspDTI ATGAA 5 cut(s) 65, 108, 333, 891, 903
TspGWI ACGGA 4 cut(s) 104, 168, 209, 589
VpaK11BI GGWCC 1 cut(s) 217
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 2 cut(s) 482, 598
XmnI GAANNNNTTC 1 cut(s) 894
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.