Rh1CG260800

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015878
Physical Location & Seq
Forward (+)
52555437 .. 52557128
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG260800.1

Sequence Viewer

Length: 906 bp
ATGGAGTTCTTCAAAAGCTGGTACAATGTTATCTGGCTTATCTTTTCTCTATCATCAACATCATTTCTTCAAGCCTCATATGGCTATGATCCCGAGTCCTTGAGTACTTTTTTTCATCATTATGCAAATACCAGTGTAAGCAATCCTCATACGGGCATCTTATACAATCTTTCTCTTCCGGCTAATTTCTCCGGTATGGAAGCTTCATTTGCTAGGATCCTTAGTGCAAAGTTTTTGAGTAGAGGAGTAAATTTCAGTTCAGTTTATATACCACCAAGGGTTATACCAATGCCATATGTGAAAAGGTTAACTATAGTGTATGAGAATTTAGGCAATTGGTCTTCAGTTTACTATCAAGTGTCCAATTACACATTGGTTGCTCCTGTTGTTGGCTTCCTGGCTTATGATTCTAATTCAAGTGCAATAGGAACTCAAAAGCTCAATTTCAGCACTCTGGGTGACCCAATTGCAATCCAGTTTCCTCATATTGATGTGCAAGGGGAAAAACCAAAGTGTGTTGAATTTGGTGTTGGTGGCTTTGAGATCAAAGACATGACTGAGGCAAATGAGTGTCTTACACATGGTGAAGGGCATTTTTCTCTTGTTGTTCCATCTCCTATAACACCGACGCCAACACCAATGCCTACGCCAACGCCAACACCAGCACCAAAGAACAAAGATAAGTTGCGAAAAGGACTTATTGCTGGAATTTGTGGGATGGTTATACTAGGGTTGGTAATGATAGTCATGTACAAGTTAGTGAGGAGGAGGCAAATTAGAGCTATGGAGAAGCAGTCTGAAAAGGATGTGGCCTTCAATACATTCTGGGTTGGGAGAAGTAAAATGCCTTCTGCATCAATGACTAGAACCCAACCATACCTTGAACAAGCAGAATATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

301

Amino Acids

33.59

Weight (kDa)

8.97

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 31 - 204 1.9e-56 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01140
fragaria_vesca FvH4_7g15770
malus_domestica MD01G1074500.v1.1 MD07G1143400.v1.1
prunus_persica Prupe.2G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358561
rosa_laevigata RLG00000027946
rosa_multiflora Rmu_sc0001609.1_g000011
rosa_roxburghii Rroxscaffold_4G00297810
rosa_rugosa Rorug01G0262600
rosa_samantha Rh1AG277400 Rh1BG243700 Rh1CG260800 Rh1DG272000
rosa_wichuraiana Rw1G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 83, 211, 224
AcsI RAATTY 4 cut(s) 250, 325, 521, 708
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 3 cut(s) 23, 106, 752
AfiI CCNNNNNNNGG 2 cut(s) 152, 389
AgsI TTSAA 6 cut(s) 13, 71, 417, 521, 817, 884
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 4 cut(s) 18, 203, 439, 782
AluI AGCT 4 cut(s) 18, 203, 439, 782
AlwI GGATC 3 cut(s) 83, 211, 224
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 810
ApoI RAATTY 4 cut(s) 250, 325, 521, 708
AsuHPI GGTGA 2 cut(s) 470, 596
AvaI CYCGRG 1 cut(s) 92
BamHI GGATCC 1 cut(s) 216
BarI GAAGNNNNNNTAC 4 cut(s) 187, 219, 832, 864
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 619, 712
BciT130I CCWGG 1 cut(s) 398
BfaI CTAG 3 cut(s) 213, 728, 864
BfmI CTRYAG 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 165, 863
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 389
Bse1I ACTGG 2 cut(s) 132, 475
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 723, 811
BseLI CCNNNNNNNGG 2 cut(s) 152, 389
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 2 cut(s) 132, 475
BseRI GAGGAG 3 cut(s) 258, 778, 781
BshFI GGCC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 179, 192
BslI CCNNNNNNNGG 2 cut(s) 152, 389
BsnI GGCC 1 cut(s) 812
BsoBI CYCGRG 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 3 cut(s) 88, 216, 543
BspANI GGCC 1 cut(s) 812
BspCNI CTCAG 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 3 cut(s) 83, 211, 224
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 2 cut(s) 132, 475
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 3 cut(s) 88, 216, 543
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 750
BstDEI CTNAG 2 cut(s) 221, 558
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 2 cut(s) 723, 811
BstKTI GATC 3 cut(s) 91, 219, 546
BstMBI GATC 3 cut(s) 88, 216, 543
BstMWI GCNNNNNNNGC 2 cut(s) 209, 896
BstNI CCWGG 1 cut(s) 398
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 812
BtsCI GGATG 2 cut(s) 723, 811
BtsIMutI CAGTG 1 cut(s) 139
CseI GACGC 1 cut(s) 637
Csp6I GTAC 3 cut(s) 22, 105, 751
CviAII CATG 3 cut(s) 553, 581, 748
CviQI GTAC 3 cut(s) 22, 105, 751
DdeI CTNAG 2 cut(s) 221, 558
DpnI GATC 3 cut(s) 90, 218, 545
DpnII GATC 3 cut(s) 88, 216, 543
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 3 cut(s) 556, 584, 751
FatI CATG 3 cut(s) 552, 580, 747
FauNDI CATATG 2 cut(s) 79, 295
FokI GGATG 2 cut(s) 730, 818
FspBI CTAG 3 cut(s) 213, 728, 864
HaeIII GGCC 1 cut(s) 812
HapII CCGG 2 cut(s) 179, 192
HgaI GACGC 1 cut(s) 637
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 3 cut(s) 556, 584, 751
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 2 cut(s) 95, 407
HpaI GTTAAC 1 cut(s) 309
HpaII CCGG 2 cut(s) 179, 192
HphI GGTGA 2 cut(s) 470, 596
Hpy166II GTNNAC 2 cut(s) 309, 349
Hpy188I TCNGA 1 cut(s) 799
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 309, 349
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 3 cut(s) 581, 823, 858
HpyCH4V TGCA 6 cut(s) 125, 227, 422, 470, 496, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 896
HpyF3I CTNAG 2 cut(s) 221, 558
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 3 cut(s) 556, 584, 751
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 88, 216, 543
LmnI GCTCC 2 cut(s) 385, 904
LweI GCATC 2 cut(s) 165, 863
MaeI CTAG 3 cut(s) 213, 728, 864
MaeIII GTNAC 1 cut(s) 458
MalI GATC 3 cut(s) 90, 218, 545
MboI GATC 3 cut(s) 88, 216, 543
MboII GAAGA 3 cut(s) 59, 167, 333
MfeI CAATTG 2 cut(s) 334, 465
MflI RGATCY 1 cut(s) 216
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 8 cut(s) 85, 156, 236, 492, 553, 756, 759, 762
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 120, 489
MspI CCGG 2 cut(s) 179, 192
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 2 cut(s) 334, 465
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 209, 896
NdeI CATATG 2 cut(s) 79, 295
NdeII GATC 3 cut(s) 88, 216, 543
NlaIII CATG 3 cut(s) 556, 584, 751
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 407
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 3 cut(s) 23, 106, 752
RsaNI GTAC 3 cut(s) 22, 105, 751
RseI CAYNNNNRTG 2 cut(s) 120, 489
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 88, 216, 543
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 398
SetI ASST 6 cut(s) 20, 205, 308, 441, 784, 882
SfaNI GCATC 2 cut(s) 165, 863
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 120, 489
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SspMI CTAG 3 cut(s) 213, 728, 864
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 275
TatI WGTACW 2 cut(s) 104, 750
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 104, 195
TspRI CASTG 1 cut(s) 139
XapI RAATTY 4 cut(s) 250, 325, 521, 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XspI CTAG 3 cut(s) 213, 728, 864
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.