Rroxscaffold_4G00297810

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015878
Physical Location & Seq
Reverse (-)
17716731 .. 17717462
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297810.1

Sequence Viewer

Length: 732 bp
ATGGAAGCTTCATTTGCTAGGATCCTTAGTGTAAAGTTTTTGAGTAGAGGAGTAAATTTCAGTTCAGTTTATATACCACCAAGGGTTATACCAATGCCATATGTGAAAAGGTTAACTATAGTGTATGAGAATTTAGGCAATTGGTCTTCAGTTTACTATCAAGTGTCCAATTACACATTGGTTGCTCCTGTTGTTGGCTTCCTGGCTTATGATTCTAATTCAAGTGCAATAGGAACTCAAAAGCTCAATTTCAGCACTCTGGGTGACCCAATTGCAATCCAGTTTCCTCATATTGATGTGCAAGGGGAAAAACCAAAGTGTGTTGAATTTGGTGTTGGTGGGAGCTTTGAGATCAAAGACATGACTGGGGCAAATGAGTGTCTTACACATGGTGAAGGGCATTTTTCTCTTGTTGTTCCATCTCCTATAACACCGACGCCAACACCAAGGCCTACGCCAACCCCAACCCCAACGCCAACGCCAACACCAGCACCAAAGAACAAAGATAAGTTGCGAAAAGGACTTATTGCTGGAATTTGTGGGATGGTTATACTAGGTTTGGTAATGATAGTCATGTACAAGTTAGTGAGGAGGAGGCAAATTAGAGCAATGGAGAAGCAGTCTGAAAAGGATGTGGCCTTCAATACATTCTGGGTTGGGAGAAGTAAAATGCCTTCTGCATCAATGACTAGAACGCAACCATACCTTGAACAAGCAGAATATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

243

Amino Acids

26.83

Weight (kDa)

9.49

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 1 - 140 2.7e-45 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01140
fragaria_vesca FvH4_7g15770
malus_domestica MD01G1074500.v1.1 MD07G1143400.v1.1
prunus_persica Prupe.2G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358561
rosa_laevigata RLG00000027946
rosa_multiflora Rmu_sc0001609.1_g000011
rosa_roxburghii Rroxscaffold_4G00297810
rosa_rugosa Rorug01G0262600
rosa_samantha Rh1AG277400 Rh1BG243700 Rh1CG260800 Rh1DG272000
rosa_wichuraiana Rw1G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 16, 29
AcsI RAATTY 4 cut(s) 55, 130, 326, 534
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 437
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 4 cut(s) 222, 326, 643, 710
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 3 cut(s) 8, 244, 345
AluI AGCT 3 cut(s) 8, 244, 345
AlwI GGATC 2 cut(s) 16, 29
AoxI GGCC 2 cut(s) 449, 636
ApoI RAATTY 4 cut(s) 55, 130, 326, 534
AsuHPI GGTGA 2 cut(s) 275, 404
BamHI GGATCC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
BbsI GAAGAC 1 cut(s) 138
BccI CCATC 2 cut(s) 427, 538
BciT130I CCWGG 1 cut(s) 203
BfaI CTAG 3 cut(s) 18, 554, 690
BfmI CTRYAG 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 80, 446
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 280, 370
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 80, 446
BseGI GGATG 2 cut(s) 549, 637
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 615
BseNI ACTGG 2 cut(s) 280, 370
BseRI GAGGAG 3 cut(s) 63, 604, 607
BshFI GGCC 2 cut(s) 451, 638
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 2 cut(s) 451, 638
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 2 cut(s) 21, 351
BspANI GGCC 2 cut(s) 451, 638
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 2 cut(s) 16, 29
BsrDI GCAATG 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 280, 370
BssECI CCNNGG 2 cut(s) 80, 446
BssMI GATC 2 cut(s) 21, 351
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 2 cut(s) 80, 446
Bst2UI CCWGG 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 722
BstAUI TGTACA 1 cut(s) 576
BstDEI CTNAG 1 cut(s) 26
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 2 cut(s) 549, 637
BstKTI GATC 2 cut(s) 24, 354
BstMBI GATC 2 cut(s) 21, 351
BstMWI GCNNNNNNNGC 2 cut(s) 14, 722
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 2 cut(s) 451, 638
BtsCI GGATG 2 cut(s) 549, 637
CseI GACGC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 577
CviAII CATG 3 cut(s) 361, 389, 574
CviJI RGCY 7 cut(s) 8, 198, 206, 244, 345, 451, 638
CviKI_1 RGCY 7 cut(s) 8, 198, 206, 244, 345, 451, 638
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 23, 353
DpnII GATC 2 cut(s) 21, 351
DraIII CACNNNGTG 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 80, 446
Eco147I AGGCCT 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 80, 446
ErhI CCWWGG 2 cut(s) 80, 446
FaeI CATG 3 cut(s) 364, 392, 577
FatI CATG 3 cut(s) 360, 388, 573
FauNDI CATATG 1 cut(s) 100
FokI GGATG 2 cut(s) 556, 644
FspBI CTAG 3 cut(s) 18, 554, 690
HaeIII GGCC 2 cut(s) 451, 638
HgaI GACGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 3 cut(s) 364, 392, 577
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 1 cut(s) 212
HpaI GTTAAC 1 cut(s) 114
HphI GGTGA 2 cut(s) 275, 404
Hpy166II GTNNAC 2 cut(s) 114, 154
Hpy188I TCNGA 1 cut(s) 625
Hpy8I GTNNAC 2 cut(s) 114, 154
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 389, 649, 684
HpyCH4V TGCA 4 cut(s) 227, 275, 301, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 722
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 3 cut(s) 364, 392, 577
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 21, 351
LmnI GCTCC 3 cut(s) 190, 342, 730
LpnPI CCDG 9 cut(s) 188, 201, 215, 245, 293, 351, 501, 516, 637
LweI GCATC 1 cut(s) 689
MaeI CTAG 3 cut(s) 18, 554, 690
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 23, 353
MboI GATC 2 cut(s) 21, 351
MboII GAAGA 1 cut(s) 138
MfeI CAATTG 2 cut(s) 139, 270
MflI RGATCY 1 cut(s) 21
MnlI CCTC 5 cut(s) 41, 297, 582, 585, 588
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 2 cut(s) 139, 270
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 14, 722
NdeI CATATG 1 cut(s) 100
NdeII GATC 2 cut(s) 21, 351
NlaIII CATG 3 cut(s) 364, 392, 577
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 451
PfeI GAWTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 2 cut(s) 21, 351
ScrFI CCNGG 1 cut(s) 203
SetI ASST 6 cut(s) 10, 113, 246, 347, 559, 708
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 294
SseBI AGGCCT 1 cut(s) 451
SspMI CTAG 3 cut(s) 18, 554, 690
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 80, 446
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
XapI RAATTY 4 cut(s) 55, 130, 326, 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 3 cut(s) 18, 554, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.