Rh1DG272000

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015878
Physical Location & Seq
Forward (+)
49220915 .. 49222482
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG272000.1

Sequence Viewer

Length: 903 bp
ATGGAGTTCTTCAAAAGCTGGTACAATGTTATCTGGCTTATCTTTTCTCTATCATCAACATCATTTCTCCAAGCCTCATATGGCTATGATCCCGAGTCCTTGAGTACTTTTTTTCATCATTATGCAAATACCAGTGTAAGCAATCCTCATACGGGCATCTTATACAATCTTTCTCTTCCGGCTAATTTCTCCGGTATGGAAGCTTCATTTGCTAGGATCCTTAGTGCAAAGTTTTTGAGTAGAGGAGTAAATTTCAGTTCAGTTTATATACCACCAAGGGTTATACCAATGCCATATGTGAAAAGGTTAACTATAGTGTATGAGAATTTAGGCAATTGGTCTTCAGTTTACTATCAAGTGTCCAATTACACATTGGTTGCTCCTGTTGTTGGCTTCCTGGCTTATGATTCTAATTCAAGTGCAATAGGAACTCAAAAGCTCAATTTCAGCGCTCTGGGTGACCCAATTGCAATCCAGTTTCCTCATATTGATGTGCAAGGGGAAAAACCAAAGTGTGTTGAATTTGGTGTTGGTGGGAGCTTTGAGATCAAAGACATGACTGAGGCAAATGAGTGTCTTACACATGGTGAAGGGCATTTTTCTCTTGTTGTTCCATCTCCTATAACACCGACGCCAACACCAATGCCTACGCCAACACCAGCACCAAAGAACAAAGATAAGTTGCGAAAAGGACTTATTGCTGGAATTTGTGGGATGGTTATACTAGGGTTGGTAATGATAGTCATGTACAAGTTAGTGAGGAGGAGGCAAATTAGAGCTATGGAGAAGCAGTCTGAAAAGGGTGTGGCCTTCAATACATTCTGGGTTGGGAGAAGTAAAATGCCTTCTGCATCAATGACTAGAACCCAACCATACCTTGAACAAGCAGAATATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

300

Amino Acids

33.39

Weight (kDa)

9.1

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 31 - 205 2.9e-58 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01140
fragaria_vesca FvH4_7g15770
malus_domestica MD01G1074500.v1.1 MD07G1143400.v1.1
prunus_persica Prupe.2G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358561
rosa_laevigata RLG00000027946
rosa_multiflora Rmu_sc0001609.1_g000011
rosa_roxburghii Rroxscaffold_4G00297810
rosa_rugosa Rorug01G0262600
rosa_samantha Rh1AG277400 Rh1BG243700 Rh1CG260800 Rh1DG272000
rosa_wichuraiana Rw1G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 83, 211, 224
AcsI RAATTY 4 cut(s) 250, 325, 521, 705
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 632
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 3 cut(s) 23, 106, 749
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 152, 389
AgsI TTSAA 5 cut(s) 13, 417, 521, 814, 881
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 5 cut(s) 18, 203, 439, 540, 779
AluI AGCT 5 cut(s) 18, 203, 439, 540, 779
AlwI GGATC 3 cut(s) 83, 211, 224
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 1 cut(s) 807
ApoI RAATTY 4 cut(s) 250, 325, 521, 705
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 470, 599
AvaI CYCGRG 1 cut(s) 92
BamHI GGATCC 1 cut(s) 216
BarI GAAGNNNNNNTAC 4 cut(s) 187, 219, 829, 861
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 622, 709
BciT130I CCWGG 1 cut(s) 398
BfaI CTAG 3 cut(s) 213, 725, 861
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 453
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 165, 860
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 389
Bse1I ACTGG 2 cut(s) 132, 475
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 720
BseLI CCNNNNNNNGG 2 cut(s) 152, 389
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 132, 475
BseRI GAGGAG 3 cut(s) 258, 775, 778
BshFI GGCC 1 cut(s) 809
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 179, 192
BslI CCNNNNNNNGG 2 cut(s) 152, 389
BsnI GGCC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 3 cut(s) 88, 216, 546
BspANI GGCC 1 cut(s) 809
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 3 cut(s) 83, 211, 224
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 132, 475
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 3 cut(s) 88, 216, 546
BssNI GRCGYC 1 cut(s) 632
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 893
BstAUI TGTACA 1 cut(s) 747
BstDEI CTNAG 2 cut(s) 221, 561
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 1 cut(s) 720
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 91, 219, 549
BstMBI GATC 3 cut(s) 88, 216, 546
BstMWI GCNNNNNNNGC 2 cut(s) 209, 893
BstNI CCWGG 1 cut(s) 398
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 809
BtsCI GGATG 1 cut(s) 720
BtsIMutI CAGTG 1 cut(s) 139
CfoI GCGC 1 cut(s) 452
CseI GACGC 1 cut(s) 640
Csp6I GTAC 3 cut(s) 22, 105, 748
CviAII CATG 3 cut(s) 556, 584, 745
CviQI GTAC 3 cut(s) 22, 105, 748
DdeI CTNAG 2 cut(s) 221, 561
DpnI GATC 3 cut(s) 90, 218, 548
DpnII GATC 3 cut(s) 88, 216, 546
DraIII CACNNNGTG 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 3 cut(s) 559, 587, 748
FatI CATG 3 cut(s) 555, 583, 744
FauNDI CATATG 2 cut(s) 79, 295
FokI GGATG 1 cut(s) 727
FspBI CTAG 3 cut(s) 213, 725, 861
GlaI GCGC 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 1 cut(s) 809
HapII CCGG 2 cut(s) 179, 192
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 3 cut(s) 559, 587, 748
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 2 cut(s) 95, 407
HpaI GTTAAC 1 cut(s) 309
HpaII CCGG 2 cut(s) 179, 192
HphI GGTGA 2 cut(s) 470, 599
Hpy166II GTNNAC 2 cut(s) 309, 349
Hpy188I TCNGA 1 cut(s) 796
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 309, 349
Hpy99I CGWCG 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 584, 820, 855
HpyCH4V TGCA 6 cut(s) 125, 227, 422, 470, 496, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 893
HpyF3I CTNAG 2 cut(s) 221, 561
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 3 cut(s) 559, 587, 748
HspAI GCGC 1 cut(s) 450
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 88, 216, 546
LmnI GCTCC 3 cut(s) 385, 537, 901
LweI GCATC 2 cut(s) 165, 860
MaeI CTAG 3 cut(s) 213, 725, 861
MaeIII GTNAC 1 cut(s) 458
MalI GATC 3 cut(s) 90, 218, 548
MboI GATC 3 cut(s) 88, 216, 546
MboII GAAGA 2 cut(s) 167, 333
MfeI CAATTG 2 cut(s) 334, 465
MflI RGATCY 1 cut(s) 216
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 8 cut(s) 85, 156, 236, 492, 556, 753, 756, 759
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 120, 489
MspI CCGG 2 cut(s) 179, 192
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 2 cut(s) 334, 465
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 209, 893
NdeI CATATG 2 cut(s) 79, 295
NdeII GATC 3 cut(s) 88, 216, 546
NlaIII CATG 3 cut(s) 559, 587, 748
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 407
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 3 cut(s) 23, 106, 749
RsaNI GTAC 3 cut(s) 22, 105, 748
RseI CAYNNNNRTG 2 cut(s) 120, 489
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 88, 216, 546
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 398
SetI ASST 7 cut(s) 20, 205, 308, 441, 542, 781, 879
SfaNI GCATC 2 cut(s) 165, 860
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 120, 489
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SspMI CTAG 3 cut(s) 213, 725, 861
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 275
TatI WGTACW 2 cut(s) 104, 747
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 104, 195
TspRI CASTG 1 cut(s) 139
XapI RAATTY 4 cut(s) 250, 325, 521, 705
XcmI CCANNNNNNNNNTGG 2 cut(s) 77, 370
XspI CTAG 3 cut(s) 213, 725, 861
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.