Rw1G024640

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015878
Physical Location & Seq
Forward (+)
51007718 .. 51009666
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024640.1

Sequence Viewer

Length: 795 bp
ATGATTTTCTTAAGCAAGGATTGTGTAAGCAATCCTCATACGGGCATCTTATACAATCTTTCTCTTCCGGCTAATTTCTCCGGTATGGAAGCTTCATTTGCTAGGATCCTTAGTGCAAAGTTTTTGAGTAGAGGAGTAAATTTCAGTTCAGTTTATATACCACCAAGGGTTATACCAATGCCATATGTGAAAAGGTTAACTATAGTGTATGAGAATTTAGGCAATTGGTCTTCAGTTTACTATCAAGTGTCCAATTACACATTGGTTGCTCCTGTTGTTGGCTTCCTGGCTTATGATTCTAATTCAAGTGCAATAGGAACTCAAAAGCTCAATTTCAGCACTCTGGGTGACCCAATTGCAATCCAGTTTCCTCATATTGATGTGCAAGGGGAAAAACCAAAGTGTGTTGAATTTGGTGTTGGTGGCTTTGAGATCAAAGACATGACTGAGGCAAATGAGTGTCTTACACATGGTGAAGGGCATTTTTCTCTTGTTGTTCCATCTCCTATAACACCGACGCCAACACCAATGCCTACGCCAACGCCAACACCAGCACCAAAGAACAAAGATAAGTTGCGAAAAGGACTTATTGCTGGAATTTGTGGGATGGTTATACTAGGGTTGGTAATGATAGTCATGTACAAGTTAGTGAGGAGGAGGCAAATTAGAGCTATGGAGAAGCAGTCTGAAAAGGATGTGGCCTTCAATACATTCTGGGTTGGGAGAAGTAAAATGCCTTCTGCATCAATGACTAGAACCCAACCATACCTTGAACAAGCAGAATATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

264

Amino Acids

29.19

Weight (kDa)

9.2

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 10 - 167 6.2e-54 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01140
fragaria_vesca FvH4_7g15770
malus_domestica MD01G1074500.v1.1 MD07G1143400.v1.1
prunus_persica Prupe.2G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358561
rosa_laevigata RLG00000027946
rosa_multiflora Rmu_sc0001609.1_g000011
rosa_roxburghii Rroxscaffold_4G00297810
rosa_rugosa Rorug01G0262600
rosa_samantha Rh1AG277400 Rh1BG243700 Rh1CG260800 Rh1DG272000
rosa_wichuraiana Rw1G024640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 100, 113
AcsI RAATTY 4 cut(s) 139, 214, 410, 597
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 518
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 2 cut(s) 41, 278
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 4 cut(s) 306, 410, 706, 773
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 3 cut(s) 92, 328, 671
AluI AGCT 3 cut(s) 92, 328, 671
AlwI GGATC 2 cut(s) 100, 113
AoxI GGCC 1 cut(s) 699
ApoI RAATTY 4 cut(s) 139, 214, 410, 597
AsuHPI GGTGA 2 cut(s) 359, 485
BamHI GGATCC 1 cut(s) 105
BarI GAAGNNNNNNTAC 4 cut(s) 76, 108, 721, 753
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 2 cut(s) 508, 601
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 3 cut(s) 102, 617, 753
BfmI CTRYAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 54, 752
BpiI GAAGAC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 278
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 612, 700
BseLI CCNNNNNNNGG 2 cut(s) 41, 278
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 3 cut(s) 147, 667, 670
BshFI GGCC 1 cut(s) 701
BsiSI CCGG 2 cut(s) 68, 81
BslI CCNNNNNNNGG 2 cut(s) 41, 278
BsnI GGCC 1 cut(s) 701
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 2 cut(s) 105, 432
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 2 cut(s) 100, 113
BspTI CTTAAG 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 105, 432
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 518
BstAFI CTTAAG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 639
BstDEI CTNAG 2 cut(s) 110, 447
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 2 cut(s) 612, 700
BstKTI GATC 2 cut(s) 108, 435
BstMBI GATC 2 cut(s) 105, 432
BstMWI GCNNNNNNNGC 2 cut(s) 98, 785
BstNI CCWGG 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 701
BtsCI GGATG 2 cut(s) 612, 700
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 640
CviAII CATG 3 cut(s) 442, 470, 637
CviJI RGCY 8 cut(s) 71, 92, 282, 290, 328, 426, 671, 701
CviKI_1 RGCY 8 cut(s) 71, 92, 282, 290, 328, 426, 671, 701
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 2 cut(s) 110, 447
DpnI GATC 2 cut(s) 107, 434
DpnII GATC 2 cut(s) 105, 432
DraIII CACNNNGTG 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 445, 473, 640
FatI CATG 3 cut(s) 441, 469, 636
FauNDI CATATG 1 cut(s) 184
FokI GGATG 2 cut(s) 619, 707
FspBI CTAG 3 cut(s) 102, 617, 753
HaeIII GGCC 1 cut(s) 701
HapII CCGG 2 cut(s) 68, 81
HgaI GACGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 3 cut(s) 445, 473, 640
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 1 cut(s) 296
HpaI GTTAAC 1 cut(s) 198
HpaII CCGG 2 cut(s) 68, 81
HphI GGTGA 2 cut(s) 359, 485
Hpy166II GTNNAC 2 cut(s) 198, 238
Hpy188I TCNGA 1 cut(s) 688
Hpy8I GTNNAC 2 cut(s) 198, 238
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 3 cut(s) 470, 712, 747
HpyCH4V TGCA 5 cut(s) 116, 311, 359, 385, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 785
HpyF3I CTNAG 2 cut(s) 110, 447
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 3 cut(s) 445, 473, 640
KspAI GTTAAC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 105, 432
LmnI GCTCC 2 cut(s) 274, 793
LweI GCATC 2 cut(s) 54, 752
MaeI CTAG 3 cut(s) 102, 617, 753
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 107, 434
MboI GATC 2 cut(s) 105, 432
MboII GAAGA 2 cut(s) 56, 222
MfeI CAATTG 2 cut(s) 223, 354
MflI RGATCY 1 cut(s) 105
MnlI CCTC 7 cut(s) 45, 125, 381, 442, 645, 648, 651
MseI TTAA 2 cut(s) 11, 197
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 68, 81
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 2 cut(s) 223, 354
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 98, 785
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 105, 432
NlaIII CATG 3 cut(s) 445, 473, 640
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 11, 197
Sau3AI GATC 2 cut(s) 105, 432
ScrFI CCNGG 1 cut(s) 287
SetI ASST 5 cut(s) 94, 197, 330, 673, 771
SfaNI GCATC 2 cut(s) 54, 752
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SspMI CTAG 3 cut(s) 102, 617, 753
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 164
TatI WGTACW 1 cut(s) 639
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 11, 197
Tru9I TTAA 2 cut(s) 11, 197
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 4 cut(s) 139, 214, 410, 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 3 cut(s) 102, 617, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.