AT4G02120

Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
940721 .. 944327
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02120.5

Sequence Viewer

Length: 1671 bp
ATGAAGTACGTATTGGTGACTGGAGGAGTGGTGAGTGGGCTTGGCAAAGGCGTTACGGCGAGTAGTATCGGCGTGGTGCTTAAAGCTTGTGGCCTTGGAGTTACCTCCATTAAAATTGATCCATATCTGAACACTGATGCTGGTACAATGTCCCCTTTTGAGCATGGAGAGGTTTTTGTACTCGATGATGGTGGAGAGGTTGATCTTGATTTGGGAAACTACGAAAGATTTCTCGATGTGACACTAACCAAAGACAACAACATAACCACTGGGAAGATATATCAGTCTGTTCTTGACAAGGAACGGAAAGGCGACTACCTTGGGAAGACTGTTCAGGTTGTTCCACACATTACTGATGCAATCAAGGATTGGATTGAGTCAGTCTCTCTGATTCCTGTGGATGGAAAGGAAGGCCAAGCTGATGTTTGTGTTATTGAGTTGGGAGGGACTGTTGGTGACATCGAGTCAATGCCTTTTATCGAGGCCTTGAGACAATTGTCATTCTCTGTTGGACCGGATAATTTCTGCCTGATTCACGTGAGCTTGATTCCCGTTCTTGGTGTTGTTGGGGAGCAGAAAACAAAGCCAACCCAACACACTGTCCGAGAACTAAGAGCTTTGGGATTGACTCCTCACTTTTTGGCATGTCGCTCTGCTCAGCCACTGCTGGAAAGTACCAAGGCTAAATTGTCTCAGTTCTGTCATGTGGCGGCAGCTAATATTCTCAATATCCATGATGTTCCAAACATTTGGCATGTTCCTCTCCTACTCCGTAATCAAAACGCTCATCACTCGATTCTCAAACAACTGAATCTAACTAACGTTGCGACAGCACCTGATCTGGATAGCTGGAATAAGATGGCTGAAACTTTTGATAACTTGACAAATCATGTCCAAATTGCTATGGTTGGAAAGTACATTGGTCTAACGGATTCTTATCTCTCGGTTGTGAAGGCCCTTCTTCATGCCTGCATTGCATGTTCATTGAAGCCACATATCGAATGGATCGCAGCTTCAGATCTTGAAGACGAAAGTGAGAAATCGACTCCGGAGGCGCATGCTGCTGCTTGGAAGATCTTGAAGAGCGCAGAATGCATTCTGGTTCCTGGTGGTTTTGGAGATCGTGGTGTGAGTGGAATGGTTTTAGCAGCCAAATACGCTAGAGAGAACAAAATTCCTTATCTTGGGATCTGCTTGGGGATGCAAATTGCAGTAATTGAGTTTGCAAGATCTGTTTTGGGTTTGGAAAGAGCAAATAGCACTGAGTTCGATGCTCAGACATCTGACCCTGTTGTTATATTTATGCCAGAAGGCTCAAGAACACATATGGGAAGCACAATGAGACTTGGATCCCGAAGAACACATTTACACAACCGAGACTCTCTCACTTCAAAACTATACGGCCAAGTTTCTTATGTAGACGAAAGGCATAGGCACCGTTACGAGGTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGTGGGTAAAGATGATACAGGGAAACGTGTTGAGGTGATTGAGTTTCAAGATCATCCATTCTATGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAGGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

556

Amino Acids

60.96

Weight (kDa)

6.12

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_synth_N PF06418 2 - 260 3e-119 CTP synthase N-terminus
GATase PF00117 270 - 504 1.1e-40 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1434
AccI GTMKAC 1 cut(s) 1419
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 1 cut(s) 710
AclI AACGTT 1 cut(s) 822
AclWI GGATC 5 cut(s) 113, 1013, 1196, 1344, 1357
AcoI YGGCCR 1 cut(s) 1402
AcsI RAATTY 2 cut(s) 1173, 1580
AcuI CTGAAG 1 cut(s) 999
AcvI CACGTG 1 cut(s) 538
AfaI GTAC 5 cut(s) 8, 145, 180, 676, 917
AfiI CCNNNNNNNGG 4 cut(s) 401, 557, 1184, 1444
AflIII ACRYGT 1 cut(s) 1519
AgsI TTSAA 7 cut(s) 988, 1025, 1081, 1392, 1475, 1541, 1652
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 1105
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw26I GTCTC 5 cut(s) 388, 484, 696, 1336, 1371
AlwI GGATC 5 cut(s) 113, 1013, 1196, 1344, 1357
AlwNI CAGNNNCTG 2 cut(s) 664, 836
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 5 cut(s) 91, 412, 483, 954, 1402
ApeKI GCWGC 6 cut(s) 713, 1010, 1061, 1064, 1148, 1634
ApoI RAATTY 2 cut(s) 1173, 1580
Asp700I GAANNNNTTC 2 cut(s) 228, 1095
AspLEI GCGC 2 cut(s) 1057, 1088
AspS9I GGNCC 2 cut(s) 512, 955
AsuHPI GGTGA 5 cut(s) 28, 43, 467, 1459, 1540
AvaII GGWCC 1 cut(s) 512
BamHI GGATCC 1 cut(s) 1349
BanI GGYRCC 1 cut(s) 1434
BbrPI CACGTG 1 cut(s) 538
BbsI GAAGAC 2 cut(s) 332, 1032
BbvI GCAGC 6 cut(s) 725, 1022, 1048, 1051, 1160, 1621
BccI CCATC 3 cut(s) 182, 395, 853
BceAI ACGGC 2 cut(s) 72, 1417
BcgI CGANNNNNNTGC 2 cut(s) 1249, 1283
BciT130I CCWGG 1 cut(s) 1107
BcoDI GTCTC 5 cut(s) 388, 484, 696, 1336, 1371
BfaI CTAG 2 cut(s) 1161, 1599
BglII AGATCT 3 cut(s) 1018, 1074, 1229
BisI GCNGC 7 cut(s) 711, 714, 1011, 1062, 1065, 1149, 1635
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 7 cut(s) 712, 715, 1012, 1063, 1066, 1150, 1636
Bme1390I CCNGG 1 cut(s) 1107
Bme18I GGWCC 1 cut(s) 512
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 512, 955
BmiI GGNNCC 3 cut(s) 1104, 1351, 1436
BmrFI CCNGG 1 cut(s) 1107
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 4 cut(s) 127, 346, 1191, 1261
BmuI ACTGGG 1 cut(s) 279
BoxI GACNNNNGTC 1 cut(s) 496
BpiI GAAGAC 2 cut(s) 332, 1032
BplI GAGNNNNNCTC 4 cut(s) 368, 400, 1368, 1400
BpmI CTGGAG 1 cut(s) 42
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 508, 1300, 1449
BsaAI YACGTR 2 cut(s) 10, 538
BsaBI GATNNNNATC 2 cut(s) 123, 936
BsaJI CCNNGG 3 cut(s) 94, 319, 678
BsaWI WCCGGW 2 cut(s) 514, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 435, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 557, 1184, 1444
Bse1I ACTGG 2 cut(s) 25, 274
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 2 cut(s) 123, 936
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 1 cut(s) 1107
BseDI CCNNGG 3 cut(s) 94, 319, 678
BseGI GGATG 4 cut(s) 406, 1206, 1546, 1573
BseJI GATNNNNATC 2 cut(s) 123, 936
BseLI CCNNNNNNNGG 4 cut(s) 401, 557, 1184, 1444
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 4 cut(s) 671, 707, 1254, 1289
BseNI ACTGG 2 cut(s) 25, 274
BseRI GAGGAG 3 cut(s) 39, 621, 1599
BseXI GCAGC 6 cut(s) 725, 1022, 1048, 1051, 1160, 1621
BshFI GGCC 5 cut(s) 93, 414, 485, 956, 1404
BshNI GGYRCC 1 cut(s) 1434
BsiSI CCGG 2 cut(s) 515, 1049
BslFI GGGAC 2 cut(s) 136, 460
BslI CCNNNNNNNGG 4 cut(s) 401, 557, 1184, 1444
BsmAI GTCTC 5 cut(s) 388, 484, 696, 1336, 1371
BsmFI GGGAC 2 cut(s) 136, 460
BsmI GAATGC 2 cut(s) 1095, 1097
BsnI GGCC 5 cut(s) 93, 414, 485, 956, 1404
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1720I GCTNAGC 1 cut(s) 657
BspACI CCGC 1 cut(s) 710
BspANI GGCC 5 cut(s) 93, 414, 485, 956, 1404
BspCNI CTCAG 4 cut(s) 670, 706, 1255, 1288
BspEI TCCGGA 1 cut(s) 1048
BspLI GGNNCC 3 cut(s) 1104, 1351, 1436
BspPI GGATC 5 cut(s) 113, 1013, 1196, 1344, 1357
BspQI GCTCTTC 1 cut(s) 1076
BspT107I GGYRCC 1 cut(s) 1434
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 2 cut(s) 25, 274
BssECI CCNNGG 3 cut(s) 94, 319, 678
BssT1I CCWWGG 3 cut(s) 94, 319, 678
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 4 cut(s) 331, 451, 601, 1439
Bst6I CTCTTC 1 cut(s) 1076
BstBAI YACGTR 2 cut(s) 10, 538
BstC8I GCNNGC 2 cut(s) 970, 1059
BstDEI CTNAG 5 cut(s) 611, 657, 693, 1263, 1275
BstF5I GGATG 4 cut(s) 406, 1206, 1546, 1573
BstHHI GCGC 2 cut(s) 1057, 1088
BstMAI GTCTC 5 cut(s) 388, 484, 696, 1336, 1371
BstMWI GCNNNNNNNGC 4 cut(s) 974, 1061, 1092, 1157
BstNI CCWGG 1 cut(s) 1107
BstNSI RCATGY 4 cut(s) 648, 758, 981, 1061
BstPAI GACNNNNGTC 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 1105
BstSNI TACGTA 1 cut(s) 10
BstV1I GCAGC 6 cut(s) 725, 1022, 1048, 1051, 1160, 1621
BstV2I GAAGAC 2 cut(s) 332, 1032
BstX2I RGATCY 5 cut(s) 1018, 1074, 1188, 1229, 1349
BstXI CCANNNNNNTGG 1 cut(s) 750
BstYI RGATCY 5 cut(s) 1018, 1074, 1188, 1229, 1349
BsuRI GGCC 5 cut(s) 93, 414, 485, 956, 1404
BtsCI GGATG 4 cut(s) 406, 1206, 1546, 1573
BtsI GCAGTG 1 cut(s) 662
BtsIMutI CAGTG 5 cut(s) 132, 267, 597, 662, 1260
Cac8I GCNNGC 2 cut(s) 970, 1059
CaiI CAGNNNCTG 2 cut(s) 664, 836
CfoI GCGC 2 cut(s) 1057, 1088
Cfr13I GGNCC 2 cut(s) 512, 955
Csp6I GTAC 5 cut(s) 7, 144, 179, 675, 916
CviAII CATG 9 cut(s) 164, 645, 704, 734, 755, 890, 965, 978, 1058
CviQI GTAC 5 cut(s) 7, 144, 179, 675, 916
DdeI CTNAG 5 cut(s) 611, 657, 693, 1263, 1275
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 1402
Eam1104I CTCTTC 1 cut(s) 1076
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 1076
Eco105I TACGTA 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 94, 319, 678
Eco147I AGGCCT 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 999
Eco72I CACGTG 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 1105
EcoT14I CCWWGG 3 cut(s) 94, 319, 678
EcoT22I ATGCAT 1 cut(s) 1097
ErhI CCWWGG 3 cut(s) 94, 319, 678
FaeI CATG 9 cut(s) 167, 648, 707, 737, 758, 893, 968, 981, 1061
FaqI GGGAC 2 cut(s) 136, 460
FatI CATG 9 cut(s) 163, 644, 703, 733, 754, 889, 964, 977, 1057
FauNDI CATATG 1 cut(s) 1326
FblI GTMKAC 1 cut(s) 1419
Fnu4HI GCNGC 7 cut(s) 711, 714, 1011, 1062, 1065, 1149, 1635
FokI GGATG 4 cut(s) 413, 1213, 1533, 1560
Fsp4HI GCNGC 7 cut(s) 711, 714, 1011, 1062, 1065, 1149, 1635
FspBI CTAG 2 cut(s) 1161, 1599
GlaI GCGC 2 cut(s) 1056, 1087
GluI GCNGC 7 cut(s) 711, 714, 1011, 1062, 1065, 1149, 1635
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 5 cut(s) 93, 414, 485, 956, 1404
HapII CCGG 2 cut(s) 515, 1049
HhaI GCGC 2 cut(s) 1057, 1088
Hin1II CATG 9 cut(s) 167, 648, 707, 737, 758, 893, 968, 981, 1061
Hin6I GCGC 2 cut(s) 1055, 1086
HinP1I GCGC 2 cut(s) 1055, 1086
HindIII AAGCTT 2 cut(s) 84, 1643
HpaII CCGG 2 cut(s) 515, 1049
HphI GGTGA 5 cut(s) 28, 43, 467, 1459, 1540
Hpy166II GTNNAC 1 cut(s) 1420
Hpy188I TCNGA 6 cut(s) 129, 390, 605, 1018, 1278, 1285
Hpy8I GTNNAC 1 cut(s) 1420
HpyAV CCTTC 5 cut(s) 404, 946, 968, 1304, 1614
HpyCH4III ACNGT 4 cut(s) 331, 451, 601, 1439
HpyCH4IV ACGT 4 cut(s) 9, 537, 822, 1519
HpyCH4V TGCA 7 cut(s) 359, 972, 977, 1095, 1204, 1211, 1226
HpyF10VI GCNNNNNNNGC 4 cut(s) 974, 1061, 1092, 1157
HpyF3I CTNAG 5 cut(s) 611, 657, 693, 1263, 1275
HpySE526I ACGT 4 cut(s) 9, 537, 822, 1519
Hsp92II CATG 9 cut(s) 167, 648, 707, 737, 758, 893, 968, 981, 1061
HspAI GCGC 2 cut(s) 1055, 1086
Kpn2I TCCGGA 1 cut(s) 1048
LguI GCTCTTC 1 cut(s) 1076
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 6 cut(s) 725, 1022, 1048, 1051, 1160, 1621
LweI GCATC 4 cut(s) 127, 346, 1191, 1261
MaeI CTAG 2 cut(s) 1161, 1599
MaeII ACGT 4 cut(s) 9, 537, 822, 1519
MaeIII GTNAC 6 cut(s) 16, 52, 100, 238, 455, 1439
MboII GAAGA 9 cut(s) 286, 337, 953, 1037, 1084, 1093, 1368, 1487, 1640
MfeI CAATTG 2 cut(s) 494, 1666
MflI RGATCY 5 cut(s) 1018, 1074, 1188, 1229, 1349
MlyI GAGTC 5 cut(s) 386, 473, 622, 1039, 1373
MmeI TCCRAC 3 cut(s) 490, 889, 1540
Mph1103I ATGCAT 1 cut(s) 1097
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 2 cut(s) 228, 1095
MseI TTAA 5 cut(s) 81, 111, 1487, 1584, 1661
MspI CCGG 2 cut(s) 515, 1049
MspR9I CCNGG 1 cut(s) 1107
MunI CAATTG 2 cut(s) 494, 1666
Mva1269I GAATGC 2 cut(s) 1095, 1097
MvaI CCWGG 1 cut(s) 1107
MwoI GCNNNNNNNGC 4 cut(s) 974, 1061, 1092, 1157
NdeI CATATG 1 cut(s) 1326
NlaIII CATG 9 cut(s) 167, 648, 707, 737, 758, 893, 968, 981, 1061
NlaIV GGNNCC 3 cut(s) 1104, 1351, 1436
NmuCI GTSAC 3 cut(s) 16, 238, 455
NsiI ATGCAT 1 cut(s) 1097
NspI RCATGY 4 cut(s) 648, 758, 981, 1061
PaeI GCATGC 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 1076
PctI GAATGC 2 cut(s) 1095, 1097
PdmI GAANNNNTTC 2 cut(s) 228, 1095
PfeI GAWTC 7 cut(s) 391, 532, 547, 796, 811, 932, 1450
PkrI GCNGC 7 cut(s) 712, 715, 1012, 1063, 1066, 1150, 1636
PleI GAGTC 5 cut(s) 385, 472, 622, 1039, 1373
PmaCI CACGTG 1 cut(s) 538
PmlI CACGTG 1 cut(s) 538
PpsI GAGTC 5 cut(s) 385, 472, 622, 1039, 1373
Ppu21I YACGTR 2 cut(s) 10, 538
PshAI GACNNNNGTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 1105
PspCI CACGTG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 3 cut(s) 1104, 1351, 1436
PspPI GGNCC 2 cut(s) 512, 955
PstNI CAGNNNCTG 2 cut(s) 664, 836
PsuI RGATCY 5 cut(s) 1018, 1074, 1188, 1229, 1349
RsaI GTAC 5 cut(s) 8, 145, 180, 676, 917
RsaNI GTAC 5 cut(s) 7, 144, 179, 675, 916
SapI GCTCTTC 1 cut(s) 1076
SaqAI TTAA 5 cut(s) 81, 111, 1487, 1584, 1661
SatI GCNGC 7 cut(s) 711, 714, 1011, 1062, 1065, 1149, 1635
Sau96I GGNCC 2 cut(s) 512, 955
SchI GAGTC 5 cut(s) 386, 473, 622, 1039, 1373
ScrFI CCNGG 1 cut(s) 1107
SfaNI GCATC 4 cut(s) 127, 346, 1191, 1261
SinI GGWCC 1 cut(s) 512
SmlI CTYRAG 3 cut(s) 487, 1315, 1464
SmoI CTYRAG 3 cut(s) 487, 1315, 1464
SnaBI TACGTA 1 cut(s) 10
SphI GCATGC 1 cut(s) 1061
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 1 cut(s) 710
SspI AATATT 1 cut(s) 721
SspMI CTAG 2 cut(s) 1161, 1599
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 1105
StyI CCWWGG 3 cut(s) 94, 319, 678
TaaI ACNGT 4 cut(s) 331, 451, 601, 1439
TaiI ACGT 4 cut(s) 12, 540, 825, 1522
TaqI TCGA 8 cut(s) 183, 234, 462, 480, 794, 999, 1043, 1269
TatI WGTACW 2 cut(s) 178, 915
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 7 cut(s) 391, 532, 547, 796, 811, 932, 1450
Tru1I TTAA 5 cut(s) 81, 111, 1487, 1584, 1661
Tru9I TTAA 5 cut(s) 81, 111, 1487, 1584, 1661
TscAI CASTG 5 cut(s) 139, 274, 604, 669, 1267
TseFI GTSAC 3 cut(s) 16, 238, 455
TseI GCWGC 6 cut(s) 713, 1010, 1061, 1064, 1148, 1634
Tsp45I GTSAC 3 cut(s) 16, 238, 455
TspDTI ATGAA 4 cut(s) 17, 953, 972, 1562
TspGWI ACGGA 3 cut(s) 319, 761, 944
TspRI CASTG 5 cut(s) 139, 274, 604, 669, 1267
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 2 cut(s) 1173, 1580
XceI RCATGY 4 cut(s) 648, 758, 981, 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 999
XmiI GTMKAC 1 cut(s) 1419
XmnI GAANNNNTTC 2 cut(s) 228, 1095
XspI CTAG 2 cut(s) 1161, 1599
Zsp2I ATGCAT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.