Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004269

Physical Location & Seq

Genomic Coordinates Forward (+)

38523969 .. 38524289

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGCGTGTTGGAGTTCTGGCAATCTTTAGGTTTGGAACTCCAGCATGCAAAGGAATGGGGGACGGATACTTTCTTAAATCCACAAACGTTCCTGGTTCCGTGGTAGGCGTTGTTGGTAACCCAAATGGCGACTACACTTGTTGGGAAAGACCCGAAGACATGGACACTCCTCGAAAGTCCTACATAGTAACAAAACAAAAGCCAGGCTCTGAAGTCTCGGCCGAAACTGCAGCCGCCCTTGCAGCTTCTTCCATGGTGTTTAGAGGTTCGGACAACAGGTCAACAGGTACTCGGCTTTGCTTCTTAACCGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

7.68

Isoelectric Point (pI)

21.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	24 - 93	9.6e-20	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02120 AT4G02120 AT4G02120 AT4G02120 AT4G02120
fragaria_vesca	FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590
malus_domestica	MD03G1297300.v1.1 MD11G1317100.v1.1 MD13G1111200.v1.1
prunus_persica	Prupe.5G049900_v2.0.a1 Prupe.8G269700_v2.0.a1 Prupe.8G269700_v2.0.a1
pyrus_communis	pycom03g23580 pycom11g27670
rosa_chinensis	RchiOBHm_Chr7g0241901
rosa_laevigata	RLG00000000531 RLG00000027970
rosa_multiflora	Rmu_sc0001865.1_g000001 Rmu_sc0038379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035060 Rroxscaffold_3G00218500
rosa_rugosa	Rorug07G0348500
rosa_samantha	Rh4DG282600 Rh7AG502600 Rh7BG473900 Rh7CG519300
rosa_wichuraiana	Rw4G024320 Rw7G042500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclI	AACGTT	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	292
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	94, 205
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	233, 245
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	245, 257
BciT130I	CCWGG	2 cut(s)	96, 207
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	234, 237, 246
BlsI	GCNGC	3 cut(s)	235, 238, 247
Bme1390I	CCNGG	2 cut(s)	96, 207
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	96, 207
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	102, 255
BseBI	CCWGG	2 cut(s)	96, 207
BseDI	CCNNGG	2 cut(s)	102, 255
BseRI	GAGGAG	1 cut(s)	162
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	245, 257
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	224
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	102, 255
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	96, 207
BstC8I	GCNNGC	1 cut(s)	49
BstDSI	CCRYGG	2 cut(s)	102, 255
BstEII	GGTNACC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 242, 245
BstNI	CCWGG	2 cut(s)	96, 207
BstNSI	RCATGY	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	94, 205
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	245, 257
BstV2I	GAAGAC	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	2 cut(s)	102, 255
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	3 cut(s)	48, 163, 256
CviJI	RGCY	7 cut(s)	205, 210, 224, 236, 248, 298, 316
CviKI_1	RGCY	7 cut(s)	205, 210, 224, 236, 248, 298, 316
CviQI	GTAC	1 cut(s)	291
DriI	GACNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	222
EagI	CGGCCG	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	255
Eco52I	CGGCCG	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	94, 205
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	51, 166, 259
FaiI	YATR	5 cut(s)	49, 164, 188, 257, 319
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	47, 162, 255
Fnu4HI	GCNGC	3 cut(s)	234, 237, 246
Fsp4HI	GCNGC	3 cut(s)	234, 237, 246
GluI	GCNGC	3 cut(s)	234, 237, 246
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	51, 166, 259
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	214, 274
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	51, 233, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 242, 245
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	51, 166, 259
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	5, 57, 81, 108, 192, 219, 265, 273
Lsp1109I	GCAGC	2 cut(s)	245, 257
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	119, 190
MboII	GAAGA	2 cut(s)	170, 243
MnlI	CCTC	2 cut(s)	183, 260
MseI	TTAA	2 cut(s)	78, 308
MspR9I	CCNGG	2 cut(s)	96, 207
MvaI	CCWGG	2 cut(s)	96, 207
MwoI	GCNNNNNNNGC	3 cut(s)	230, 242, 245
NcoI	CCATGG	1 cut(s)	255
NlaIII	CATG	3 cut(s)	51, 166, 259
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	2 cut(s)	200, 274
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	235, 238, 247
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	94, 205
PspEI	GGTNACC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	94, 205
PspN4I	GGNNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	78, 308
SatI	GCNGC	3 cut(s)	234, 237, 246
ScrFI	CCNGG	2 cut(s)	96, 207
SetI	ASST	6 cut(s)	35, 93, 250, 271, 284, 292
SfcI	CTRYAG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	51
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	94, 205
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	175
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	78, 308
Tru9I	TTAA	2 cut(s)	78, 308
TseI	GCWGC	2 cut(s)	233, 245
TspGWI	ACGGA	2 cut(s)	81, 91
XceI	RCATGY	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.