Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004269

Physical Location & Seq

Genomic Coordinates Reverse (-)

782983 .. 789332

Gene Structure 6350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGAAGTACGTTCTGGTGACCGGAGGTGTGGTCAGTGGCCTCGGCAAAGGCGTCACTGCCAGCGGCATAGGCGTCGTTCTCAGAGCCTGTGGCCTTCGCGTCACCTGCATCAAAATTGATCCCTACTTGAATACGGATGCCGGTACCATGTCTCCCTTTGAACACGGCGAGGTTTTTGTTCTTGATGATGGTGGAGAGGTTGATTTAGACCTGGGTAACTACGAACGCTTCGTAGATGTGACTCTTACTAGGGACAACAACATTACGACGGGCAAGATATATCAGTCGGTCCTTGACAAGGAGCGGAGAGGAGATTATCTTGGAAAGACTGTGCAGGTAGTTCCACACATCACCGATGCCATCAAAAATTGGATTGAATCTGTTTCTCTCATTCCTGTGGATGGTAAAGAGGGCCCTGCAGATGTTTGTGTTATAGAGTTGGGCGGAACTGTGGGGGACATTGAATCAATGCCATTCATTGAGGCTCTTCGGCAGTTGTCTTTTTCGGTCGGGCAAGAAAACTTCTGTCTTATCCATGTGAGCCTGATACCGGTACTGGGTGTTGTAGGAGAGCAAAAAACAAAGCCTACACAACATAGTGTGCGGGAGCTAAGAGCATTAGGCTTGACTCCTCATCTATTAGCATGTCGCTCCGCGCAGCCTTTATTGGAAAATACGAAGCAGAAACTTTCACAATTTTGTCATGTTGCAGCCGGTAATATTCTTAATATTCATGATGTTCCAAACATCTGGCATGTCCCTCTCTTACTTAGGAACCAAAATGCTCATCGGTCGATTCTTCAACAACTTAATTTACTAAGCATTGCTACACCTCCTGATTTGAGAGATTGGACCAAGATGGCAGAGACTTATGATAATCTCACCAATTCTGTGAGGATTGCCATGGTGGGAAAGTATGTTGGCCTCACAGATTCATATCTGTCTGTAGTGAAGGCCCTTTTGCATGCTTGCATTGCATGTTCTCTAAAGCCAGAAATTGACTGGATTGCTGCTTCGGATCTTGAAGATGATAGTGCTAAACTGACACCAGAAGCACATGCTGCTGCGTGGGAGACTTTAAGGAATGCAGCTTGTGTCTTGGTTCCTGGTGGATTTGGAGATCGTGGTGTACGAGGTATGATCTTGGCTGCAAAATATGCCAGAGAAAACAATGTTCCTTATCTTGGGATATGTTTGGGGATGCAGATATCTGTGATTGAGTTTGCTAGAGCTGTTTTGGGTCTGGAAAGGGCAGACAGCACCGAGTTTGATGCACAAACACCCAATCCTGTTGTAATTTTCATGCCTGAGGGTTCAAGAACACATATGGGAAGCACAATGAGATTAGGATCGAGAAGAACACTTTTCCAAACTCCTGATTGCATTACTTCAAAACTGTACCATAACTCAAAGTATGTTGATGAGCGGCATCGGCATAGATATGAGGTAAACCCAGATGTCATTGGAATTCTTGAAGAAGCTGGCCTAAAATTTGTAGGGAAGGATGACAGCGGAAGAAGAATGGAGATTTTAGAGCTTCCAAGTCATCCATTCTATATAGGAGTGCAATTTCATCCAGAATTTAAATCAAGGCCTAGGAGGCCCTCAGCTCTTTTTCTAGGTCTTATCTTGGCAGCAACAGGGCAGTTGGAAACGCATCTTAGTGGGAATCAAAGCAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

561

Amino Acids

61.58

Weight (kDa)

6.15

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	2 - 272	1.1e-122	CTP synthase N-terminus
GATase	PF00117	309 - 543	2e-39	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02120 AT4G02120 AT4G02120 AT4G02120 AT4G02120
fragaria_vesca	FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590
malus_domestica	MD03G1297300.v1.1 MD11G1317100.v1.1 MD13G1111200.v1.1
prunus_persica	Prupe.5G049900_v2.0.a1 Prupe.8G269700_v2.0.a1 Prupe.8G269700_v2.0.a1
pyrus_communis	pycom03g23580 pycom11g27670
rosa_chinensis	RchiOBHm_Chr7g0241901
rosa_laevigata	RLG00000000531 RLG00000027970
rosa_multiflora	Rmu_sc0001865.1_g000001 Rmu_sc0038379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035060 Rroxscaffold_3G00218500
rosa_rugosa	Rorug07G0348500
rosa_samantha	Rh4DG282600 Rh7AG502600 Rh7BG473900 Rh7CG519300
rosa_wichuraiana	Rw4G024320 Rw7G042500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	2 cut(s)	113, 325
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccBSI	CCGCTC	2 cut(s)	304, 1426
AccII	CGCG	2 cut(s)	99, 656
AciI	CCGC	7 cut(s)	63, 304, 444, 604, 654, 1426, 1512
AclWI	GGATC	3 cut(s)	113, 1026, 1357
AcsI	RAATTY	3 cut(s)	1467, 1490, 1580
AcyI	GRCGYC	2 cut(s)	51, 72
AfaI	GTAC	5 cut(s)	8, 145, 555, 1131, 1400
AfiI	CCNNNNNNNGG	5 cut(s)	298, 401, 550, 557, 1184
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	9 cut(s)	130, 161, 377, 464, 803, 1025, 1317, 1392, 1475
AjnI	CCWGG	2 cut(s)	210, 1105
AluBI	AGCT	6 cut(s)	610, 1091, 1232, 1481, 1537, 1610
AluI	AGCT	6 cut(s)	610, 1091, 1232, 1481, 1537, 1610
Alw26I	GTCTC	3 cut(s)	156, 860, 1067
AlwI	GGATC	3 cut(s)	113, 1026, 1357
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	8 cut(s)	37, 91, 412, 922, 954, 1483, 1592, 1601
ApaI	GGGCCC	1 cut(s)	416
ApeKI	GCWGC	8 cut(s)	658, 710, 1010, 1061, 1064, 1088, 1148, 1634
ApoI	RAATTY	3 cut(s)	1467, 1490, 1580
AsiGI	ACCGGT	1 cut(s)	550
Asp718I	GGTACC	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	1595
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	6 cut(s)	289, 412, 413, 852, 955, 1602
AsuHPI	GGTGA	4 cut(s)	28, 94, 343, 874
AvaII	GGWCC	2 cut(s)	289, 852
AvrII	CCTAGG	1 cut(s)	1595
AxyI	CCTNAGG	1 cut(s)	1308
BaeGI	GKGCMC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	1606
BbvI	GCAGC	8 cut(s)	670, 722, 997, 1048, 1051, 1100, 1135, 1646
BccI	CCATC	4 cut(s)	182, 368, 395, 853
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 1253, 1287
BciT130I	CCWGG	2 cut(s)	212, 1107
BcoDI	GTCTC	3 cut(s)	156, 860, 1067
BfaI	CTAG	4 cut(s)	249, 1227, 1596, 1619
BfmI	CTRYAG	2 cut(s)	417, 945
BfuAI	ACCTGC	2 cut(s)	113, 325
BglI	GCCNNNNNGGC	1 cut(s)	1600
BlnI	CCTAGG	1 cut(s)	1595
Bme1390I	CCNGG	2 cut(s)	212, 1107
Bme18I	GGWCC	2 cut(s)	289, 852
BmgT120I	GGNCC	6 cut(s)	289, 412, 413, 852, 955, 1602
BmiI	GGNNCC	4 cut(s)	145, 414, 776, 1104
BmrFI	CCNGG	2 cut(s)	212, 1107
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	7 cut(s)	117, 127, 346, 1191, 1261, 1438, 1666
BmuI	ACTGGG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	1606
BsaBI	GATNNNNATC	2 cut(s)	936, 1348
BsaHI	GRCGYC	2 cut(s)	51, 72
BsaJI	CCNNGG	4 cut(s)	40, 211, 903, 1595
BsaWI	WCCGGW	2 cut(s)	20, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	298, 401, 550, 557, 1184
Bse118I	RCCGGY	3 cut(s)	140, 550, 713
Bse1I	ACTGG	2 cut(s)	561, 1007
Bse21I	CCTNAGG	1 cut(s)	1308
Bse3DI	GCAATG	2 cut(s)	822, 972
Bse8I	GATNNNNATC	2 cut(s)	936, 1348
BseBI	CCWGG	2 cut(s)	212, 1107
BseDI	CCNNGG	4 cut(s)	40, 211, 903, 1595
BseGI	GGATG	6 cut(s)	142, 406, 1206, 1510, 1546, 1573
BseJI	GATNNNNATC	2 cut(s)	936, 1348
BseLI	CCNNNNNNNGG	5 cut(s)	298, 401, 550, 557, 1184
BseMI	GCAATG	2 cut(s)	822, 972
BseMII	CTCAG	3 cut(s)	94, 1299, 1620
BseNI	ACTGG	2 cut(s)	561, 1007
BseRI	GAGGAG	2 cut(s)	324, 621
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	8 cut(s)	670, 722, 997, 1048, 1051, 1100, 1135, 1646
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	99, 656
Bsh1285I	CGRYCG	2 cut(s)	510, 794
BshFI	GGCC	8 cut(s)	39, 93, 414, 924, 956, 1485, 1594, 1603
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	550
BsiEI	CGRYCG	2 cut(s)	510, 794
BsiSI	CCGG	4 cut(s)	21, 141, 551, 714
BslFI	GGGAC	3 cut(s)	266, 470, 743
BslI	CCNNNNNNNGG	5 cut(s)	298, 401, 550, 557, 1184
BsmAI	GTCTC	3 cut(s)	156, 860, 1067
BsmFI	GGGAC	3 cut(s)	266, 470, 743
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	8 cut(s)	39, 93, 414, 924, 956, 1485, 1594, 1603
Bsp120I	GGGCCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	7 cut(s)	63, 304, 444, 604, 654, 1426, 1512
BspANI	GGCC	8 cut(s)	39, 93, 414, 924, 956, 1485, 1594, 1603
BspCNI	CTCAG	3 cut(s)	93, 1300, 1619
BspFNI	CGCG	2 cut(s)	99, 656
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	4 cut(s)	145, 414, 776, 1104
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	2 cut(s)	113, 325
BspPI	GGATC	3 cut(s)	113, 1026, 1357
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	143
BsrBI	CCGCTC	2 cut(s)	304, 1426
BsrDI	GCAATG	2 cut(s)	822, 972
BsrFI	RCCGGY	3 cut(s)	140, 550, 713
BsrI	ACTGG	2 cut(s)	561, 1007
BssAI	RCCGGY	3 cut(s)	140, 550, 713
BssECI	CCNNGG	4 cut(s)	40, 211, 903, 1595
BssMI	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
BssNI	GRCGYC	2 cut(s)	51, 72
BssT1I	CCWWGG	2 cut(s)	903, 1595
Bst2UI	CCWGG	2 cut(s)	212, 1107
Bst4CI	ACNGT	3 cut(s)	331, 451, 1398
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	2 cut(s)	51, 72
BstAPI	GCANNNNNTGC	2 cut(s)	1061, 1157
BstC8I	GCNNGC	4 cut(s)	61, 966, 970, 1483
BstDEI	CTNAG	7 cut(s)	80, 611, 770, 818, 1308, 1606, 1661
BstDSI	CCRYGG	1 cut(s)	903
BstEII	GGTNACC	1 cut(s)	16
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	6 cut(s)	142, 406, 1206, 1510, 1546, 1573
BstFNI	CGCG	2 cut(s)	99, 656
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	5 cut(s)	121, 1021, 1123, 1143, 1352
BstMAI	GTCTC	3 cut(s)	156, 860, 1067
BstMBI	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
BstMCI	CGRYCG	2 cut(s)	510, 794
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 105, 974, 1061, 1157, 1432, 1600
BstNI	CCWGG	2 cut(s)	212, 1107
BstNSI	RCATGY	5 cut(s)	648, 758, 968, 981, 1061
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	210, 1105
BstSFI	CTRYAG	2 cut(s)	417, 945
BstSLI	GKGCMC	1 cut(s)	416
BstUI	CGCG	2 cut(s)	99, 656
BstV1I	GCAGC	8 cut(s)	670, 722, 997, 1048, 1051, 1100, 1135, 1646
BstX2I	RGATCY	1 cut(s)	1018
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	1018
Bsu36I	CCTNAGG	1 cut(s)	1308
BsuRI	GGCC	8 cut(s)	39, 93, 414, 924, 956, 1485, 1594, 1603
BtgI	CCRYGG	1 cut(s)	903
BtsCI	GGATG	6 cut(s)	142, 406, 1206, 1510, 1546, 1573
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	40, 54
BveI	ACCTGC	2 cut(s)	113, 325
Cac8I	GCNNGC	4 cut(s)	61, 966, 970, 1483
CaiI	CAGNNNCTG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	658
Cfr10I	RCCGGY	3 cut(s)	140, 550, 713
Cfr13I	GGNCC	6 cut(s)	289, 412, 413, 852, 955, 1602
CseI	GACGC	3 cut(s)	40, 61, 88
Csp6I	GTAC	5 cut(s)	7, 144, 554, 1130, 1399
CspAI	ACCGGT	1 cut(s)	550
CviQI	GTAC	5 cut(s)	7, 144, 554, 1130, 1399
DdeI	CTNAG	7 cut(s)	80, 611, 770, 818, 1308, 1606, 1661
DpnI	GATC	5 cut(s)	120, 1020, 1122, 1142, 1351
DpnII	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
DraI	TTTAAA	1 cut(s)	1585
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	903, 1595
Eco147I	AGGCCT	1 cut(s)	1594
Eco24I	GRGCYC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	1209
Eco47I	GGWCC	2 cut(s)	289, 852
Eco81I	CCTNAGG	1 cut(s)	1308
Eco91I	GGTNACC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO109I	RGGNCCY	4 cut(s)	412, 413, 955, 1602
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	1467
EcoRII	CCWGG	2 cut(s)	210, 1105
EcoRV	GATATC	1 cut(s)	1209
EcoT14I	CCWWGG	2 cut(s)	903, 1595
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	2 cut(s)	903, 1595
FaqI	GGGAC	3 cut(s)	266, 470, 743
FauI	CCCGC	1 cut(s)	597
FauNDI	CATATG	1 cut(s)	1326
FokI	GGATG	6 cut(s)	149, 413, 1213, 1517, 1533, 1560
FriOI	GRGCYC	1 cut(s)	416
FspBI	CTAG	4 cut(s)	249, 1227, 1596, 1619
GlaI	GCGC	1 cut(s)	657
HaeIII	GGCC	8 cut(s)	39, 93, 414, 924, 956, 1485, 1594, 1603
HapII	CCGG	4 cut(s)	21, 141, 551, 714
HgaI	GACGC	3 cut(s)	40, 61, 88
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	2 cut(s)	51, 72
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	7 cut(s)	241, 377, 464, 628, 796, 932, 1669
HpaII	CCGG	4 cut(s)	21, 141, 551, 714
HphI	GGTGA	4 cut(s)	28, 94, 343, 874
Hpy166II	GTNNAC	2 cut(s)	1130, 1450
Hpy188I	TCNGA	2 cut(s)	83, 1018
Hpy8I	GTNNAC	2 cut(s)	1130, 1450
Hpy99I	CGWCG	2 cut(s)	77, 271
HpyAV	CCTTC	3 cut(s)	104, 946, 1495
HpyCH4III	ACNGT	3 cut(s)	331, 451, 1398
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 105, 974, 1061, 1157, 1432, 1600
HpyF3I	CTNAG	7 cut(s)	80, 611, 770, 818, 1308, 1606, 1661
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	2 cut(s)	51, 72
HspAI	GCGC	1 cut(s)	656
KpnI	GGTACC	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	3 cut(s)	301, 607, 656
Lsp1109I	GCAGC	8 cut(s)	670, 722, 997, 1048, 1051, 1100, 1135, 1646
LweI	GCATC	7 cut(s)	117, 127, 346, 1191, 1261, 1438, 1666
MaeI	CTAG	4 cut(s)	249, 1227, 1596, 1619
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	5 cut(s)	16, 52, 100, 215, 238
MalI	GATC	5 cut(s)	120, 1020, 1122, 1142, 1351
MbiI	CCGCTC	2 cut(s)	304, 1426
MboI	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
MboII	GAAGA	7 cut(s)	479, 791, 1037, 1368, 1487, 1527, 1530
MflI	RGATCY	1 cut(s)	1018
MhlI	GDGCHC	1 cut(s)	416
MlyI	GAGTC	2 cut(s)	235, 622
MmeI	TCCRAC	1 cut(s)	1629
MseI	TTAA	4 cut(s)	726, 810, 1079, 1584
MslI	CAYNNNNRTG	3 cut(s)	395, 1440, 1662
MspA1I	CMGCKG	2 cut(s)	63, 1512
MspI	CCGG	4 cut(s)	21, 141, 551, 714
MspR9I	CCNGG	2 cut(s)	212, 1107
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	2 cut(s)	212, 1107
MvnI	CGCG	2 cut(s)	99, 656
MwoI	GCNNNNNNNGC	7 cut(s)	69, 105, 974, 1061, 1157, 1432, 1600
NcoI	CCATGG	1 cut(s)	903
NdeI	CATATG	1 cut(s)	1326
NdeII	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
NlaIV	GGNNCC	4 cut(s)	145, 414, 776, 1104
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	4 cut(s)	16, 52, 100, 238
NspI	RCATGY	5 cut(s)	648, 758, 968, 981, 1061
PaeI	GCATGC	1 cut(s)	968
PagI	TCATGA	1 cut(s)	733
PaqCI	CACCTGC	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	1594
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 228, 1129
PctI	GAATGC	1 cut(s)	1090
PfeI	GAWTC	5 cut(s)	377, 464, 796, 932, 1669
PinAI	ACCGGT	1 cut(s)	550
PleI	GAGTC	2 cut(s)	235, 622
PpsI	GAGTC	2 cut(s)	235, 622
Psp6I	CCWGG	2 cut(s)	210, 1105
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	210, 1105
PspN4I	GGNNCC	4 cut(s)	145, 414, 776, 1104
PspOMI	GGGCCC	1 cut(s)	412
PspPI	GGNCC	6 cut(s)	289, 412, 413, 852, 955, 1602
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	1018
RsaI	GTAC	5 cut(s)	8, 145, 555, 1131, 1400
RsaNI	GTAC	5 cut(s)	7, 144, 554, 1130, 1399
RseI	CAYNNNNRTG	3 cut(s)	395, 1440, 1662
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	726, 810, 1079, 1584
Sau3AI	GATC	5 cut(s)	118, 1018, 1120, 1140, 1349
Sau96I	GGNCC	6 cut(s)	289, 412, 413, 852, 955, 1602
SchI	GAGTC	2 cut(s)	235, 622
ScrFI	CCNGG	2 cut(s)	212, 1107
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	7 cut(s)	117, 127, 346, 1191, 1261, 1438, 1666
SfcI	CTRYAG	2 cut(s)	417, 945
SfiI	GGCCNNNNNGGCC	1 cut(s)	1600
SinI	GGWCC	2 cut(s)	289, 852
SmiI	ATTTAAAT	1 cut(s)	1585
SmiMI	CAYNNNNRTG	3 cut(s)	395, 1440, 1662
SphI	GCATGC	1 cut(s)	968
SseBI	AGGCCT	1 cut(s)	1594
SsiI	CCGC	7 cut(s)	63, 304, 444, 604, 654, 1426, 1512
SspI	AATATT	2 cut(s)	721, 730
SspMI	CTAG	4 cut(s)	249, 1227, 1596, 1619
StuI	AGGCCT	1 cut(s)	1594
StyD4I	CCNGG	2 cut(s)	210, 1105
StyI	CCWWGG	2 cut(s)	903, 1595
SwaI	ATTTAAAT	1 cut(s)	1585
TaaI	ACNGT	3 cut(s)	331, 451, 1398
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	794, 1352
TaqII	GACCGA	3 cut(s)	277, 496, 780
TauI	GCSGC	2 cut(s)	66, 1429
TfiI	GAWTC	5 cut(s)	377, 464, 796, 932, 1669
Tru1I	TTAA	4 cut(s)	726, 810, 1079, 1584
Tru9I	TTAA	4 cut(s)	726, 810, 1079, 1584
TscAI	CASTG	2 cut(s)	40, 61
TseFI	GTSAC	4 cut(s)	16, 52, 100, 238
TseI	GCWGC	8 cut(s)	658, 710, 1010, 1061, 1064, 1088, 1148, 1634
Tsp45I	GTSAC	4 cut(s)	16, 52, 100, 238
TspDTI	ATGAA	6 cut(s)	17, 466, 722, 924, 1291, 1562
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	40, 61
VpaK11BI	GGWCC	2 cut(s)	289, 852
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	3 cut(s)	1467, 1490, 1580
XceI	RCATGY	5 cut(s)	648, 758, 968, 981, 1061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
XmaJI	CCTAGG	1 cut(s)	1595
XspI	CTAG	4 cut(s)	249, 1227, 1596, 1619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.