MD13G1111200.v1.1

'de novo' CTP biosynthetic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0004269
Physical Location & Seq
Reverse (-)
8075408 .. 8083862
8455 bp
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UTR
Exon/CDS
Intron
MD13G1111200.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGGGTTTCTTAAGGTTGATTTGGACCTGGGCAACTATGAACGCTTCCTAGATGTGACTCTTACTAGGGGTAACAACATTACCACTGGCAAGATATATCAGGGAGGGAGACACCATCAGTTGCTGGAATCATTAACCCCGGTTCTGAGGGATTTCAAAAGCTATTTTTCAGTTAAGAGGAAATCACCATACCAGTGCACTCAAACATTGAAGCATCATGCGCCGCACATCCTACTGCTGATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
CTP_synth_N MazG

Protein Analysis

83

Amino Acids

9.49

Weight (kDa)

9.66

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_synth_N PF06418 5 - 34 3.3e-10 CTP synthase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 157, 211
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 124
ApaLI GTGCAC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 50, 66
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 29, 140
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 29, 140
BmsI GCATC 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 28, 138
Bse1I ACTGG 2 cut(s) 91, 193
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 28, 138
BseGI GGATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 91, 193
BseSI GKGCMC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 200
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 91, 193
BssECI CCNNGG 2 cut(s) 28, 138
Bst2UI CCWGG 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 138
BstSLI GKGCMC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 84, 200
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 1 cut(s) 218
CviJI RGCY 1 cut(s) 162
CviKI_1 RGCY 1 cut(s) 162
DdeI CTNAG 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 39, 97, 190, 219
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 50, 66
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 224
HapII CCGG 1 cut(s) 140
HhaI GCGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 2 cut(s) 58, 128
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 221
LpnPI CCDG 7 cut(s) 14, 41, 72, 86, 110, 153, 206
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 50, 66
MaeIII GTNAC 2 cut(s) 55, 71
MhlI GDGCHC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 3 cut(s) 98, 141, 171
MseI TTAA 4 cut(s) 12, 134, 174, 247
MslI CAYNNNNRTG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 29, 140
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 140
NlaIII CATG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 4 cut(s) 12, 134, 174, 247
SatI GCNGC 1 cut(s) 224
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 29, 140
SduI GDGCHC 1 cut(s) 200
SetI ASST 3 cut(s) 18, 30, 164
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 50, 66
StyD4I CCNGG 2 cut(s) 27, 138
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 4 cut(s) 12, 134, 174, 247
Tru9I TTAA 4 cut(s) 12, 134, 174, 247
TscAI CASTG 2 cut(s) 91, 200
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 2 cut(s) 91, 200
Vha464I CTTAAG 1 cut(s) 11
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 2 cut(s) 50, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.