Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004269

Physical Location & Seq

Genomic Coordinates Forward (+)

50466888 .. 50467695

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG282600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAGATGAGCTGCCAGTCGAATGACAATTCTATTGATATTAAACAGCTCTGTAACTCTGGGGGGACCTCATACCAGGACAAGACTTACTCGGGCTATATGCCTCCTCCTCCTTTTGTTGATTTAGACATGGGTAACTACGAGCGGTTCGTAGATGTGACTCTTACTAGGAACAACAGCGTTACGACGGGCAAGATATATCAGGAGAACAATGGGAACCCTGACCCAGCAAAGGTCGCCAAAGTAAAGGCCCTATGTAAAGAACTCAATCTTCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

4.89

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	40 - 69	1.3e-09	CTP synthase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02120 AT4G02120 AT4G02120 AT4G02120 AT4G02120
fragaria_vesca	FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590 FvH4_5g39590
malus_domestica	MD03G1297300.v1.1 MD11G1317100.v1.1 MD13G1111200.v1.1
prunus_persica	Prupe.5G049900_v2.0.a1 Prupe.8G269700_v2.0.a1 Prupe.8G269700_v2.0.a1
pyrus_communis	pycom03g23580 pycom11g27670
rosa_chinensis	RchiOBHm_Chr7g0241901
rosa_laevigata	RLG00000000531 RLG00000027970
rosa_multiflora	Rmu_sc0001865.1_g000001 Rmu_sc0038379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035060 Rroxscaffold_3G00218500
rosa_rugosa	Rorug07G0348500
rosa_samantha	Rh4DG282600 Rh7AG502600 Rh7BG473900 Rh7CG519300
rosa_wichuraiana	Rw4G024320 Rw7G042500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	12, 49
AluI	AGCT	2 cut(s)	12, 49
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	66, 250
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	66, 250
BmiI	GGNNCC	2 cut(s)	67, 218
BmrFI	CCNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	2 cut(s)	96, 99
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	67, 218
BsrBI	CCGCTC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	66, 250
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	12, 49, 96, 251
CviKI_1	RGCY	4 cut(s)	12, 49, 96, 251
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	66, 250
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	133
FaiI	YATR	6 cut(s)	73, 99, 101, 131, 199, 256
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	29, 45, 62, 89, 188, 234, 240
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	4 cut(s)	53, 134, 157, 181
MbiI	CCGCTC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	4 cut(s)	79, 114, 117, 120
MseI	TTAA	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	67, 218
NmuCI	GTSAC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	67, 218
PspPI	GGNCC	2 cut(s)	66, 250
PspPPI	RGGWCCY	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	66, 250
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	4 cut(s)	14, 51, 71, 237
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	66
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.